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Goodwill and Intangible Assets Narrative (Details) (USD $)
In Thousands, unless otherwise specified
6 Months Ended 3 Months Ended 12 Months Ended
Mar. 31, 2015
Mar. 31, 2014
Mar. 31, 2015
Dec. 31, 2014
Dec. 31, 2013
Sep. 30, 2013
Sep. 30, 2014
Oct. 01, 2014
Apr. 30, 2014
Goodwill [Line Items]                  
Goodwill, Period Increase (Decrease) $ 8,763us-gaap_GoodwillPeriodIncreaseDecrease                
Goodwill 118,264us-gaap_Goodwill   118,264us-gaap_Goodwill       109,501us-gaap_Goodwill    
Impairment of intangible assets 0us-gaap_AssetImpairmentCharges 398us-gaap_AssetImpairmentCharges              
FluidX [Member]                  
Goodwill [Line Items]                  
Goodwill               8,247us-gaap_Goodwill
/ us-gaap_BusinessAcquisitionAxis
= brks_FluidXMember
 
Dynamic Micro Systems                  
Goodwill [Line Items]                  
Goodwill, Period Increase (Decrease)     300us-gaap_GoodwillPeriodIncreaseDecrease
/ us-gaap_BusinessAcquisitionAxis
= brks_DynamicMicroSystemsMember
300us-gaap_GoodwillPeriodIncreaseDecrease
/ us-gaap_BusinessAcquisitionAxis
= brks_DynamicMicroSystemsMember
         
Goodwill                 11,939us-gaap_Goodwill
/ us-gaap_BusinessAcquisitionAxis
= brks_DynamicMicroSystemsMember
Celigo Cell Cytometer Product Line                  
Goodwill [Line Items]                  
Impairment of intangible assets         $ 400us-gaap_AssetImpairmentCharges
/ us-gaap_BusinessAcquisitionAxis
= brks_CeligoCellCytometerProductLineMember
$ 2,000us-gaap_AssetImpairmentCharges
/ us-gaap_BusinessAcquisitionAxis
= brks_CeligoCellCytometerProductLineMember