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Condensed Consolidated Statements of Cash Flows (Unaudited) (USD $)
In Thousands
6 Months Ended 248 Months Ended
Jun. 30, 2011
Jun. 30, 2010
Jun. 30, 2011
CASH FLOWS FROM OPERATING ACTIVITIES:      
Net loss $ (86,005) $ (86,951) $ (1,860,747)
Adjustments to reconcile net loss to net cash used in operating activities:      
Depreciation and amortization 8,023 8,607 104,486
Stock-based compensation expense 4,701 8,005 118,123
Stock expense for shares issued pursuant to research agreement     3,018
(Gain) loss on sale, abandonment/disposal or impairment of property and equipment (63)   23,512
Accrued interest on investments, net of amortization of discounts     (191)
In-process research and development     19,726
Goodwill impairment     151,428
Loss on available-for-sale securities   347 873
Other, net 9 (6) 1,113
Changes in assets and liabilities:      
State research and development credit exchange receivable 418 1,066 (885)
Prepaid expenses and other current assets 1,256 1,221 7
Other assets 87   (230)
Accounts payable (447) (3,810) 1,255
Accrued expenses and other current liabilities 4,574 (3,313) 18,503
Other liabilities     (2)
Net cash used in operating activities (67,447) (74,834) (1,420,011)
CASH FLOWS FROM INVESTING ACTIVITIES:      
Purchase of marketable securities     (796,779)
Sales and maturities of marketable securities 3,828   796,393
Purchase of property and equipment (6,109) (4,052) (326,360)
Proceeds from sale of property and equipment 63   347
Net cash used in investing activities (2,218) (4,052) (326,399)
CASH FLOWS FROM FINANCING ACTIVITIES:      
Issuance of common stock and warrants 10,424 1,527 1,229,504
Collection of Series C convertible preferred stock subscriptions receivable     50,000
Issuance of Series B convertible preferred stock for cash     15,000
Cash received for common stock to be issued     3,900
Repurchase of common stock     (1,028)
Put shares sold to majority stockholder     623
Borrowings under lines of credit     4,220
Proceeds from notes receivables     1,742
Borrowings on notes payable to related party 18,000 77,000 340,000
Principal payments on notes payable to principal stockholder     (70,000)
Borrowings on notes payable     3,460
Principal payments on notes payable     (1,667)
Proceeds from senior convertible notes     207,050
Payment of employment taxes related to vested restricted stock units (50) (1,302) (11,624)
Net cash provided by financing activities 28,374 77,225 1,771,180
NET (DECREASE) INCREASE IN CASH AND CASH EQUIVALENTS (41,291) (1,661) 24,770
CASH AND CASH EQUIVALENTS, BEGINNING OF PERIOD 66,061 30,019  
CASH AND CASH EQUIVALENTS, END OF PERIOD 24,770 28,358 24,770
SUPPLEMENTAL CASH FLOWS DISCLOSURES:      
Cash paid for income taxes     26
Interest paid in cash 10,136 6,131 42,285
Accretion on redeemable preferred stock     (952)
Issuance of common stock upon conversion of notes payable     3,331
Increase in additional paid-in capital resulting from merger     171,154
Issuance of common stock for notes receivable     2,758
Issuance of put option by stockholder     (2,949)
Put option redemption by stockholder     1,921
Issuance of Series C convertible preferred stock subscriptions     50,000
Issuance of Series A redeemable convertible preferred stock     4,296
Conversion of Series A redeemable convertible preferred stock     (5,248)
Non-cash construction in progress and property and equipment 1,039 459 1,039
Cancellation of principal on note payable to related party $ 11,116   $ 27,797