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STATEMENTS OF CASH FLOWS - USD ($)
$ in Thousands
12 Months Ended
Dec. 31, 2015
Dec. 31, 2014
Dec. 31, 2013
Cash flows from operating activities:      
Net income (loss) $ 46 $ (35,670) $ (38,379)
Adjustments to reconcile net income (loss) to net cash (used in) provided by operating activities:      
Depreciation and amortization 56 47 320
Accretion and amortization on investments, net 2,098 2,889 1,322
Loss (gain) on retirement/sales of property and equipment, net   3 (831)
Loss on write-downs of property and equipment     200
Loss on sales of marketable securities 1    
Stock-based compensation for services by non-employees 364 253 252
Stock-based compensation for employees and directors 8,397 7,658 4,435
Amortization related to 401(k) contributions 161 111 458
Unrealized (gain) loss on derivatives (16) (351) 316
Changes in assets and liabilities:      
Interest and other receivables (243) (399) 188
Prepaid assets 89 (72) 1,081
Deposits and other assets   5 (4)
Accounts payable (873) (364) (2,032)
Accrued compensation and benefits (1,239) 580 (431)
Accrued collaboration charges 2,328    
Accrued restructuring charges 52 (94) (1,878)
Accrued liabilities (417) (246) (1,697)
Deferred revenue (35,000) 35,000  
Net cash (used in) provided by operating activities (24,196) 9,350 (36,680)
Cash flows from investing activities:      
Restricted cash transfer (1) 529 (1)
Purchases of property and equipment (90) (131) (3)
Proceeds from sales of property and equipment     1,196
Purchases of marketable securities (206,459) (190,263) (88,977)
Proceeds from sales/calls of marketable securities 4,242 10,549  
Proceeds from maturities of marketable securities 202,381 101,412 108,839
Net cash provided by (used in) investing activities 73 (77,904) 21,054
Cash flows from financing activities:      
Proceeds from issuance of common stock, net of issuance costs 2,575 98,360 6,553
Net cash provided by financing activities 2,575 98,360 6,553
Net (decrease) increase in cash and cash equivalents (21,548) 29,806 (9,073)
Cash and cash equivalents, at beginning of year 42,796 12,990 22,063
Cash and cash equivalents, at end of year $ 21,248 $ 42,796 $ 12,990