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Income Taxes (Details) - USD ($)
$ in Thousands
12 Months Ended
Dec. 31, 2015
Dec. 31, 2014
Dec. 31, 2013
Income (loss) from operations before income taxes      
Income (loss) before income taxes $ 7,556 $ (48,547) $ (82,848)
Reconciliation of income taxes at the U.S. federal statutory rate to the provision for income taxes      
Provision (benefit) at U.S. federal statutory rate 2,645 (16,992) (28,997)
Unbenefitted net operating losses and tax credits (29,424) 13,432 18,215
Non-deductible amortization of debt discount 1,087 2,294 6,645
Non-deductible interest expense 122 1 747
Non-deductible debt exchange expense and loss on repurchase of senior notes     7,985
Deferred tax impact of law change     (5,549)
Foreign tax rate differential 21,443    
Non-deductible officer compensation 4,696 830 976
Other 456 369 277
Provision (benefit) for income taxes 1,025 (66) 299
Deferred tax assets:      
Federal and state net operating loss carry forwards 329,984 504,267  
Federal and state research credits 201,151 165,352  
Capitalized research and development 13,017 2,475  
Deferred revenue and accruals 11,212 15,799  
Non-cash compensation 39,034 31,248  
Deferred financing obligation 20,328 20,383  
Other 3,125 8,306  
Total gross deferred tax assets 617,851 747,830  
Less valuation allowance for deferred tax assets (542,936) (669,168)  
Net deferred tax assets 74,915 78,662  
Deferred tax liabilities:      
Property and equipment (25,787) (19,925)  
Equity component of 2018 Notes and 2020 Notes (49,128) (58,737)  
Total gross deferred tax liabilities (74,915) (78,662)  
Valuation allowance      
Increase (decrease) in valuation allowance (126,200) (42,200) (50,000)
Realized tax benefits 106,400    
U.S.      
Income (loss) from operations before income taxes      
Income (loss) before income taxes 110,560 (48,506) $ (82,848)
Non-U.S.      
Income (loss) from operations before income taxes      
Income (loss) before income taxes $ (103,004) $ (41)