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Collaborative Arrangements (Tables)
12 Months Ended
Dec. 31, 2015
Organization, Consolidation and Presentation of Financial Statements [Abstract]  
Collaborator revenues
During the three years ended December 31, 2015, the Company recognized the following revenues attributable to the Janssen HCV collaboration:
 
2015
 
2014
 
2013
 
(in thousands)
Royalty revenues
$
1,518

 
$
13,481

 
$
130,724

Collaborative revenues:
 
 
 
 
 
Up-front and amendment payments revenues
$

 
$

 
$
190,345

Net reimbursement for telaprevir development costs
1,946

 
7,104

 
2,793

Reimbursement for manufacturing services

 

 
10,299

Total collaborative revenues attributable to the Janssen HCV collaboration
$
1,946

 
$
7,104

 
$
203,437

Total revenues attributable to the Janssen HCV collaboration
$
3,464

 
$
20,585

 
$
334,161

Fair Value of Consideration Transferred
The consideration paid and the fair value of the contingent milestone and royalty payments payable by the Company pursuant to the Parion Agreement are set forth in the table below:
 
June 4, 2015
 
(in thousands)
Up-front payment
$
80,000

Fair value of contingent milestone and royalty payments
175,340

Total
$
255,340

Schedule of Recognized Identified Assets Acquired and Liabilities Assumed
The following table summarizes the fair values of the assets and liabilities recorded on the effective date of the Parion Agreement:
 
June 4, 2015
 
(in thousands)
Intangible assets
$
255,340

Goodwill
10,468

Deferred tax liability
(91,023
)
Net other assets (liabilities)
(10,468
)
Net assets attributable to noncontrolling interests
$
164,317

Schedule of Collaborative Arrangement Activity Net Loss Attributable to Noncontrolling Interest
An aggregate summary of net loss attributable to noncontrolling interest related to the Company’s VIEs for the three years ended December 31, 2015 was as follows:
 
2015
 
2014
 
2013
 
(in thousands)
Loss attributable to noncontrolling interest before provision for income taxes
$
6,646

 
$
764

 
$
283,747

Provision for (benefit from) income taxes
29,731

 
3,876

 
(166,145
)
(Increase) decrease in fair value of contingent milestone and royalty payments
(4,530
)
 
(450
)
 
124,920

Net loss attributable to noncontrolling interest
$
31,847

 
$
4,190

 
$
242,522

Schedule of Collaborative Arrangement Summary Of Items Related To Variable Interest Entities
The following table summarizes items related to the Company’s VIEs included in the Company’s consolidated balance sheets as of the dates set forth in the table:
 
December 31, 2015
 
December 31, 2014
 
(in thousands)
Restricted cash and cash equivalents (VIE)
$
78,910

 
$
8,418

Prepaid expenses and other current assets
3,138

 
268

Intangible assets
284,340

 
29,000

Goodwill
19,391

 
8,923

Other assets
455

 
42

Accounts payable
676

 
189

Taxes payable
24,554

 
3,594

Other current liabilities
7,100

 
297

Deferred tax liability, net
110,438

 
11,544

Other liabilities
300

 
300

Noncontrolling interest
153,661

 
21,177