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Quarterly Financial Data (unaudited) (Details) (USD $)
Share data in Thousands, except Per Share data, unless otherwise specified
3 Months Ended 12 Months Ended
Dec. 31, 2013
Sep. 30, 2013
Jun. 30, 2013
Mar. 31, 2013
Dec. 31, 2012
Sep. 30, 2012
Jun. 30, 2012
Mar. 31, 2012
Dec. 31, 2013
Dec. 31, 2012
Dec. 31, 2011
Dec. 31, 2003
Revenues:                        
Product revenues, net $ 128,822,000 $ 186,653,000 $ 254,789,000 $ 267,381,000 $ 281,309,000 $ 303,501,000 $ 373,273,000 $ 375,375,000 $ 837,645,000 $ 1,333,458,000 $ 950,889,000  
Royalty revenues 36,887,000 27,012,000 49,120,000 43,573,000 43,451,000 25,586,000 33,480,000 38,981,000 156,592,000 141,498,000 50,015,000  
Collaborative revenues (1) 185,448,000 8,035,000 6,841,000 17,414,000 9,234,000 6,919,000 11,552,000 24,381,000 217,738,000 52,086,000 409,722,000  
Total revenues 351,157,000 221,700,000 310,750,000 328,368,000 333,994,000 336,006,000 418,305,000 438,737,000 1,211,975,000 1,527,042,000 1,410,626,000  
Costs and expenses:                        
Cost of product revenues (2) 13,281,000 20,048,000 24,695,000 30,955,000 75,595,000 30,680,000 104,549,000 25,918,000 88,979,000 236,742,000 63,625,000  
Royalty expenses 8,983,000 7,291,000 13,236,000 11,788,000 12,120,000 7,856,000 9,874,000 13,293,000 41,298,000 43,143,000 16,880,000  
Research and development expenses 249,609,000 228,624,000 222,455,000 218,095,000 213,109,000 200,161,000 196,544,000 196,371,000 918,783,000 806,185,000 707,706,000  
Sales, general and administrative expenses 75,188,000 87,754,000 106,521,000 92,879,000 110,452,000 97,684,000 117,514,000 111,146,000 362,342,000 436,796,000 400,721,000  
Restructuring expenses 27,658,000 12,048,000 776,000 39,000 194,000 696,000 594,000 360,000 40,521,000 1,844,000 2,074,000 91,824,000
Intangible asset impairment charges 250,600,000 0 0 412,900,000 0 0 0 0 663,500,000 0 105,800,000  
Total costs and expenses 625,319,000 355,765,000 367,683,000 766,656,000 411,470,000 337,077,000 429,075,000 347,088,000 2,115,423,000 1,524,710,000 1,296,806,000  
Income (loss) from operations (274,162,000) (134,065,000) (56,933,000) (438,288,000) (77,476,000) (1,071,000) (10,770,000) 91,649,000 (903,448,000) 2,332,000 113,820,000  
Interest expense, net (12,619,000) (95,000) (6,551,000) (3,465,000) (3,263,000) (4,054,000) (3,814,000) (3,891,000) (22,730,000) (15,022,000) (37,681,000)  
Interest expense         (33,000) 13,000 179,000 150,000        
Other income (expense), net 53,472,000 (4,747,000) 27,000 1,187,000                
Income (loss) before provision for (benefit from) income taxes (340,253,000) (129,413,000) (63,511,000) (442,940,000) (80,772,000) (5,112,000) (14,405,000) 87,908,000 (976,117,000) (12,381,000) 60,445,000  
Benefit from income taxes (3)(4) (155,704,000) (751,000) (1,799,000) (130,313,000) (2,696,000) 21,355,000 20,063,000 32,000 (288,567,000) 38,754,000 19,266,000  
Net income (loss) (184,549,000) (128,662,000) (61,712,000) (312,627,000) (78,076,000) (26,467,000) (34,468,000) 87,876,000 (687,550,000) (51,135,000) 41,179,000  
Net loss (income) attributable to noncontrolling interest (Alios) 228,834,000 4,530,000 4,547,000 4,611,000 1,928,000 (31,076,000) (30,463,000) 3,714,000 242,522,000 (55,897,000) (11,605,000)  
Net income (loss) attributable to Vertex 44,285,000 (124,132,000) (57,165,000) (308,016,000) (76,148,000) (57,543,000) (64,931,000) 91,590,000 (445,028,000) (107,032,000) 29,574,000  
Net income (loss) per share attributable to Vertex common shareholders:                        
Basic (usd per share) $ 0.19 $ (0.54) $ (0.26) $ (1.43) $ (0.35) $ (0.27) $ (0.31) $ 0.44 $ (1.98) $ (0.50) $ 0.14  
Diluted (usd per share) $ 0.19 $ (0.54) $ (0.26) $ (1.43) $ (0.35) $ (0.27) $ (0.31) $ 0.43 $ (1.98) $ (0.50) $ 0.14  
Shares used in per share calculations:                        
Basic (shares) 231,264 230,505 222,053 215,421 214,607 213,767 211,344 208,018 224,906 211,946 204,891  
Diluted (shares) 235,717 230,505 222,053 215,421 214,607 213,767 211,344 219,264 224,906 211,946 208,807  
Write-downs of inventories to net realizable value                 10,358,000 133,189,000 0  
Write-down of inventories effect on net income (loss) per share (usd per share)                 $ (0.05) $ (0.61)    
Intangible assets 0 [1]       663,500,000 [1]       0 [1] 663,500,000 [1]    
Janssen
                       
Revenues:                        
Royalty revenues                 130,724,000 117,592,000 20,289,000  
Collaborative revenues (1) 182,400,000               203,437,000 16,178,000 274,393,000  
Total revenues                 334,161,000 133,770,000 294,682,000  
Alios Bio Pharma Inc
                       
Costs and expenses:                        
Benefit from income taxes (3)(4)                 (166,145,000) 39,029,000 48,809,000  
Net loss (income) attributable to noncontrolling interest (Alios)                 (242,522,000) 55,897,000 11,605,000  
Research and Development Arrangement | Alios Bio Pharma Inc
                       
Costs and expenses:                        
Intangible asset impairment charges 250,600,000               250,600,000      
Shares used in per share calculations:                        
Intangible assets         $ 250,600,000         $ 250,600,000 $ 250,600,000  
[1] Amounts as of December 31, 2012 include the assets and liabilities of Vertex’s variable interest entity (“VIE”), Alios BioPharma, Inc. (“Alios”). The Company deconsolidated Alios as of December 31, 2013. Vertex’s interests and obligations with respect to the VIE’s assets and liabilities are limited to those accorded to Vertex in its agreement with Alios. See Note B, "Collaborative Arrangements," to these consolidated financial statements for amounts.