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Commitments (Details) (USD $)
3 Months Ended 12 Months Ended 12 Months Ended
Jun. 30, 2011
Y
Dec. 31, 2012
Dec. 31, 2011
Dec. 31, 2010
Sep. 30, 2011
2015 Notes
Sep. 30, 2010
2015 Notes
Dec. 31, 2012
Fan Pier Leases
Dec. 31, 2011
Fan Pier Leases
Dec. 31, 2010
Fan Pier Leases
Dec. 31, 2012
Kendall Square Lease
Y
squarefeet
term_extension
Dec. 31, 2011
Kendall Square Lease
Dec. 31, 2010
Kendall Square Lease
Dec. 31, 2012
Other Operating Leases
Operating lease                          
Initial term of lease agreement (in years) 15                        
Optional term of lease agreement (in years) 10                 10      
Office space used for operation (in square feet)                   120,000      
Options to extend term                   2      
Future minimum commitments under facility leases commitments with terms of more than one year                          
2013   $ 136,312,000         $ 83,304,000     $ 18,338,000     $ 43,165,000
2014   112,424,000         67,206,000     18,338,000     35,375,000
2015   109,477,000         67,206,000     18,338,000     27,909,000
2016   95,460,000         67,206,000     18,338,000     9,916,000
2017   94,448,000         67,206,000     18,338,000     8,904,000
Thereafter   851,127,000         814,404,000     6,113,000     30,610,000
Total minimum lease payments   1,399,248,000         1,166,532,000     97,803,000     155,879,000
Future minimum sublease income                          
2013   (8,495,000)                      
2014   (8,495,000)                      
2015   (3,976,000)                      
2016   0                      
2017   0                      
Thereafter   0                      
Total minimum lease payments   (20,966,000)                      
Rental expense   57,100,000 49,400,000 46,600,000     6,600,000 3,900,000 0 11,600,000 11,200,000 11,600,000  
Effective interest rate (percentage)   4.00%                      
Convertible senior subordinated notes (due 2015)   $ 400,000,000 [1] $ 400,000,000 [1]   $ 400,000,000 $ 400,000,000              
[1] Amounts include the assets and liabilities of Vertex’s variable interest entity (“VIE”), Alios BioPharma, Inc. (“Alios”). Vertex’s interests and obligations with respect to the VIE’s assets and liabilities are limited to those accorded to Vertex in its agreement with Alios. See Note B, "Collaborative Arrangements," to these consolidated financial statements for amounts.