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Significant Accounting Policies, Revenue Recognition (Details)
$ in Thousands
1 Months Ended 3 Months Ended 9 Months Ended
Sep. 30, 2013
USD ($)
Dec. 31, 2012
USD ($)
Target
Jun. 30, 2012
USD ($)
Jan. 31, 2012
USD ($)
Sep. 30, 2016
USD ($)
Partner
Drug
Sep. 30, 2015
USD ($)
Jun. 30, 2015
USD ($)
AccountingUnit
Sep. 30, 2016
USD ($)
Agreement
Category
Stage
Sep. 30, 2015
USD ($)
Revenue Recognition [Abstract]                  
Revenue earned         $ 110,927 $ 49,121   $ 186,272 $ 232,133
Number of categories of milestone events | Category               3  
Number of stages of life-cycle of drugs | Stage               3  
Number of partners that exercised option to license drugs | Partner         2        
Number of drugs licensed under option in collaboration agreements | Drug         2        
Biogen and Janssen [Member]                  
Revenue Recognition [Abstract]                  
Revenue earned         $ 85,000        
Minimum [Member]                  
Revenue Recognition [Abstract]                  
Period to complete IND-enabling animal studies               12 months  
Period to complete Phase 1 clinical trial               1 year  
Period to complete Phase 2 clinical trial               1 year  
Period to complete Phase 3 clinical trial               2 years  
Period to prepare and submit regulatory filings               6 months  
Period to obtain marketing authorization from applicable regulatory agency               1 year  
Pre-specified product sales threshold included in commercialization milestones               $ 1,000,000  
Maximum [Member]                  
Revenue Recognition [Abstract]                  
Period to complete IND-enabling animal studies               18 months  
Period to complete Phase 1 clinical trial               2 years  
Period to complete Phase 2 clinical trial               3 years  
Period to complete Phase 3 clinical trial               4 years  
Period to prepare and submit regulatory filings               12 months  
Period to obtain marketing authorization from applicable regulatory agency               2 years  
IONIS-FXI [Member]                  
Revenue Recognition [Abstract]                  
Upfront fee received             $ 100,000    
Number of units of accounting | AccountingUnit             3    
Upfront payment allocated to exclusive license             $ 91,200    
Upfront payment allocated to ongoing development services             4,300    
Upfront payment allocated to delivery of API             $ 4,500    
Assumed percentage change in estimated selling price             10.00%    
Percentage change in earned revenue based on assumed change in estimated selling price             1.00%    
Amount by which earned revenue would change based on assumed change in estimated selling price             $ 900    
Revenue earned               $ 3,200  
Collaboration Agreements [Member]                  
Revenue Recognition [Abstract]                  
Revenue earned         $ 90,200 $ 18,100   $ 120,900 $ 75,100
Number of collaboration agreements | Agreement               4  
Number of remaining collaboration agreements with option to license drugs | Agreement               3  
SPINRAZA [Member]                  
Revenue Recognition [Abstract]                  
Upfront payment recorded as deferred revenue       $ 29,000          
DMPK [Member]                  
Revenue Recognition [Abstract]                  
Upfront payment recorded as deferred revenue     $ 12,000            
Neurology [Member]                  
Revenue Recognition [Abstract]                  
Upfront payment recorded as deferred revenue   $ 30,000              
Number of targets | Target   3              
Strategic Neurology [Member]                  
Revenue Recognition [Abstract]                  
Upfront payment recorded as deferred revenue $ 100,000                
Term of collaboration agreement               6 years