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Significant Accounting Policies, Revenue Recognition (Details)
$ in Thousands
1 Months Ended 3 Months Ended 6 Months Ended
Sep. 30, 2013
USD ($)
Dec. 31, 2012
USD ($)
Target
Jun. 30, 2012
USD ($)
Jan. 31, 2012
USD ($)
Jun. 30, 2016
USD ($)
Jun. 30, 2015
USD ($)
AccountingUnit
Jun. 30, 2016
USD ($)
Agreement
Category
Stage
Jun. 30, 2015
USD ($)
Revenue Recognition [Abstract]                
Revenue earned         $ 38,470 $ 120,428 $ 75,345 $ 183,012
Number of categories of milestone events | Category             3  
Number of stages of life-cycle of drugs | Stage             3  
Minimum [Member]                
Revenue Recognition [Abstract]                
Period to complete IND-enabling animal studies             12 months  
Period to complete Phase 1 clinical trial             1 year  
Period to complete Phase 2 clinical trial             1 year  
Period to complete Phase 3 clinical trial             2 years  
Period to prepare and submit regulatory filings             6 months  
Period to obtain marketing authorization from applicable regulatory agency             1 year  
Pre-specified product sales threshold included in commercialization milestones             $ 1,000,000  
Maximum [Member]                
Revenue Recognition [Abstract]                
Period to complete IND-enabling animal studies             18 months  
Period to complete Phase 1 clinical trial             2 years  
Period to complete Phase 2 clinical trial             3 years  
Period to complete Phase 3 clinical trial             4 years  
Period to prepare and submit regulatory filings             12 months  
Period to obtain marketing authorization from applicable regulatory agency             2 years  
IONIS-FXI [Member]                
Revenue Recognition [Abstract]                
Upfront fee received           $ 100,000    
Number of units of accounting | AccountingUnit           3    
Upfront payment allocated to exclusive license           $ 91,200   91,200
Upfront payment allocated to ongoing development services           4,300   4,300
Upfront payment allocated to delivery of API           $ 4,500   4,500
Assumed percentage change in estimated selling price           10.00%    
Percentage change in earned revenue based on assumed change in estimated selling price           1.00%    
Amount by which earned revenue would change based on assumed change in estimated selling price           $ 900    
Revenue earned             $ 3,200  
Collaboration Agreements [Member]                
Revenue Recognition [Abstract]                
Revenue earned         $ 9,400 $ 17,800 $ 30,700 $ 57,000
Number of collaboration agreements | Agreement             4  
Number of remaining collaboration agreements with option to license drugs | Agreement             3  
Nusinersen [Member]                
Revenue Recognition [Abstract]                
Upfront payment recorded as deferred revenue       $ 29,000        
DMPK [Member]                
Revenue Recognition [Abstract]                
Upfront payment recorded as deferred revenue     $ 12,000          
Neurology [Member]                
Revenue Recognition [Abstract]                
Upfront payment recorded as deferred revenue   $ 30,000            
Number of targets | Target   3            
Strategic Neurology [Member]                
Revenue Recognition [Abstract]                
Upfront payment recorded as deferred revenue $ 100,000              
Term of collaboration agreement             6 years