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Fair Value Measurements
9 Months Ended
Sep. 30, 2015
Fair Value Measurements [Abstract]  
Fair Value Measurements
4.Fair Value Measurements

We use a three-tier fair value hierarchy to prioritize the inputs used in our fair value measurements. These tiers include: Level 1, defined as observable inputs such as quoted prices in active markets for identical assets, which includes our money market funds and treasury securities classified as available-for-sale securities and our investment in equity securities in publicly-held biotechnology companies; Level 2, defined as inputs other than quoted prices in active markets that are either directly or indirectly observable, which includes our fixed income securities and commercial paper classified as available-for-sale securities; and Level 3, defined as unobservable inputs in which little or no market data exists, therefore requiring us to develop our own assumptions. Our Level 3 investments include our investments in the equity securities of publicly-held biotechnology companies for which we calculated a lack of marketability discount because there were restrictions on when we could trade the securities. We determine the lack of marketability discount by using a Black-Scholes model to value a hypothetical put option to approximate the cost of hedging the stock until the restriction ends. The majority of our securities have been classified as Level 2. We obtain the fair value of our Level 2 investments from our custodian bank or from a professional pricing service. We validate the fair value of our Level 2 investments by understanding the pricing model used by the custodian banks or professional pricing service provider and comparing that fair value to the fair value based on observable market prices. During the nine months ended September 30, 2015, there were no transfers between our Level 1 and Level 2 investments. We recognize transfers between levels of the fair value hierarchy on the date of the event or change in circumstances that caused the transfer.

We measure the following major security types at fair value on a recurring basis. The following summary breaks down the fair-value hierarchy that we used to value each security at September 30, 2015 and December 31, 2014 (in thousands):

  
At
September 30,
2015
  
Quoted Prices in
Active Markets
(Level 1)
  
Significant Other
Observable
Inputs
(Level 2)
  
Significant
Unobservable
Inputs
(Level 3)
 
Cash equivalents (1)
 
$
114,602
  
$
114,602
  
$
  
$
 
Corporate debt securities (2)
  
447,597
   
   
447,597
   
 
Debt securities issued by U.S. government agencies (2)
  
122,282
   
   
122,282
   
 
Debt securities issued by states of the United States and political subdivisions of the states (3)
  
123,320
   
   
123,320
   
 
Investment in Regulus Therapeutics Inc.
  
18,594
   
18,594
   
   
 
Total
 
$
826,395
  
$
133,196
  
$
693,199
  
$
 

  
At
December 31,
2014
  
Quoted Prices in
Active Markets
(Level 1)
  
Significant Other
Observable
Inputs
(Level 2)
  
Significant
Unobservable
Inputs
(Level 3)
 
Cash equivalents (1)
 
$
104,680
  
$
104,680
  
$
  
$
 
Corporate debt securities (4)
  
372,002
   
   
372,002
   
 
Debt securities issued by U.S. government agencies (2)
  
109,855
   
   
109,855
   
 
Debt securities issued by the U.S. Treasury (5)
  
19,017
   
19,017
   
   
 
Debt securities issued by states of the United States and political subdivisions of the states (6)
  
105,033
   
   
105,033
   
 
Investment in Regulus Therapeutics Inc.
  
81,881
   
   
   
81,881
 
Total
 
$
792,468
  
$
123,697
  
$
586,890
  
$
81,881
 

(1)Included in cash and cash equivalents on our condensed consolidated balance sheet.

(2)Included in short-term investments on our condensed consolidated balance sheet.

(3)$7.6 million included in cash and cash equivalents on our condensed consolidated balance sheet, with the difference included in short-term investments on our condensed consolidated balance sheet.

(4)$0.8 million included in cash and cash equivalents on our condensed consolidated balance sheet, with the difference included in short-term investments on our condensed consolidated balance sheet.

(5)$10 million included in cash and cash equivalents on our condensed consolidated balance sheet, with the difference included in short-term investments on our condensed consolidated balance sheet.

(6)$9.3 million included in cash and cash equivalents on our condensed consolidated balance sheet, with the difference included in short-term investments on our condensed consolidated balance sheet.

In November 2014, Regulus completed a public offering. As part of the offering, we sold shares of Regulus' common stock and became subject to trading restrictions on our remaining shares through January 2015. Therefore, at December 31, 2014, we recorded a lack of marketability discount on our investment in Regulus and classified it as a Level 3 investment. At the end of January 2015, we reclassified our investment in Regulus to a Level 1 investment because the contractual trading restrictions on the shares we own ended.

The following is a reconciliation of our investments measured at fair value on a recurring basis using significant unobservable inputs (Level 3) for the nine months ended September 30, 2015 (in thousands):
   
Beginning balance of Level 3 investments (at December 31, 2014)
 
$
81,881
 
  Total gain included in accumulated other comprehensive income (loss)
  
22,377
 
  Transfers out of Level 3 investments
  
(104,258
)
Ending balance of Level 3 investments (at September 30, 2015)
 
$
 

Other Fair Value Disclosures

Our 1 percent and 2¾ percent notes had a fair value of $454.6 million and $149.4 million, respectively at September 30, 2015. We determine the fair value of our notes based on quoted market prices for these notes, which are Level 2 measurements because the notes do not trade regularly.