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Fair Value Measurements (Tables)
3 Months Ended
Mar. 31, 2015
Fair Value Measurements [Abstract]  
Schedule of assets measured at fair value on a recurring basis
We measure the following major security types at fair value on a recurring basis. The following summary breaks down the fair-value hierarchy that we used to value each security at March 31, 2015 and December 31, 2014 (in thousands):

  
At
March 31,
2015
  
Quoted Prices in
Active Markets
(Level 1)
  
Significant Other
Observable
Inputs
(Level 2)
  
Significant
Unobservable
Inputs
(Level 3)
 
Cash equivalents (1)
 
$
112,777
  
$
112,777
  
$
  
$
 
Corporate debt securities (2)
  
328,108
   
   
328,108
   
 
Debt securities issued by U.S. government agencies (2)
  
115,542
   
   
115,542
   
 
Debt securities issued by the U.S. Treasury (2)
  
6,003
   
6,003
   
   
 
Debt securities issued by states of the United States and political subdivisions of the states (3)
  
106,096
   
   
106,096
   
 
Investment in Regulus Therapeutics Inc.
  
93,446
   
93,446
   
   
 
Total
 
$
761,972
  
$
212,226
  
$
549,746
  
$
 

  
At
December 31,
2014
  
Quoted Prices in
Active Markets
(Level 1)
  
Significant Other
Observable
Inputs
(Level 2)
  
Significant
Unobservable
Inputs
(Level 3)
 
Cash equivalents (1)
 
$
104,680
  
$
104,680
  
$
  
$
 
Corporate debt securities (4)
  
372,002
   
   
372,002
   
 
Debt securities issued by U.S. government agencies (2)
  
109,855
   
   
109,855
   
 
Debt securities issued by the U.S. Treasury (5)
  
19,017
   
19,017
   
   
 
Debt securities issued by states of the United States and political subdivisions of the states (6)
  
105,033
   
   
105,033
   
 
Investment in Regulus Therapeutics Inc.
  
81,881
   
   
   
81,881
 
Total
 
$
792,468
  
$
123,697
  
$
586,890
  
$
81,881
 

(1)Included in cash and cash equivalents on our condensed consolidated balance sheet.

(2)Included in short-term investments on our condensed consolidated balance sheet.

(3)$9.0 million included in cash and cash equivalents on our condensed consolidated balance sheet, with the difference included in short-term investments on our condensed consolidated balance sheet.

(4)$0.8 million included in cash and cash equivalents on our condensed consolidated balance sheet, with the difference included in short-term investments on our condensed consolidated balance sheet.

(5)$10 million included in cash and cash equivalents on our condensed consolidated balance sheet, with the difference included in short-term investments on our condensed consolidated balance sheet.

(6)$9.3 million included in cash and cash equivalents on our condensed consolidated balance sheet, with the difference included in short-term investments on our condensed consolidated balance sheet.


Summary of investments measured at fair value on a recurring basis using significant unobservable inputs (Level 3)
The following is a summary of our investments measured at fair value on a recurring basis using significant unobservable inputs (Level 3) for the three months ended March 31, 2015 (in thousands):
   
Beginning balance of Level 3 investments
 
$
81,881
 
  Total gain included in accumulated other comprehensive income (loss)
  
22,377
 
  Transfers out of Level 3 investments
  
(104,258
)
Ending balance of Level 3 investments
 
$