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Fair Value Measurements
9 Months Ended
Sep. 30, 2014
Fair Value Measurements [Abstract]  
Fair Value Measurements
4.Fair Value Measurements

We use a three-tier fair value hierarchy to prioritize the inputs used in our fair value measurements. These tiers include: Level 1, defined as observable inputs such as quoted prices in active markets for identical assets, which includes our money market funds and treasury securities classified as available-for-sale securities and our investment in equity securities in publicly-held biotechnology companies; Level 2, defined as inputs other than quoted prices in active markets that are either directly or indirectly observable, which includes our fixed income securities and commercial paper classified as available-for-sale securities; and Level 3, defined as unobservable inputs in which little or no market data exists, therefore requiring us to develop our assumptions. Our Level 3 investments include investments in the equity securities of publically held biotechnology companies for which we calculated a lack of marketability discount because there were restrictions on when we could trade the securities. The majority of our securities have been classified as Level 2. We obtain the fair value of our Level 2 investments from our custodian bank or from a professional pricing service. We validate the fair value of our Level 2 investments by understanding the pricing model used by the custodian banks or professional pricing service provider and comparing that fair value to the fair value based on observable market prices. During the nine months ended September 30, 2014, there were no transfers between our Level 1 and Level 2 investments. We recognize transfers between levels of the fair value hierarchy on the date of the event or change in circumstances that caused the transfer.


We measure the following major security types at fair value on a recurring basis. The following summary breaks down the fair-value hierarchy that each security is valued with at September 30, 2014 and December 31, 2013 as follows (in thousands):

  
At September 30,
2014
  
Quoted Prices in
Active Markets
(Level 1)
  
Significant Other
Observable
Inputs
(Level 2)
  
Significant
Unobservable
Inputs
(Level 3)
 
Cash equivalents
 
$
44,551
  
$
44,551
  
$
  
$
 
Corporate debt securities (1)
  
353,848
   
   
353,848
   
 
Debt securities issued by U.S. government agencies (1)
  
106,397
   
   
106,397
   
 
Debt securities issued by the U.S. Treasury
  
9,040
   
9,040
   
   
 
Debt securities issued by states of the United States and political subdivisions of the states (1)
  
64,344
   
   
64,344
   
 
Investment in Regulus Therapeutics Inc.
  
47,426
   
47,426
   
   
 
Equity securities (2)
  
1,021
   
1,021
   
   
 
Total
 
$
626,627
  
$
102,038
  
$
524,589
  
$
 

  
At December 31,
2013
  
Quoted Prices in
Active Markets
(Level 1)
  
Significant Other
Observable
Inputs
(Level 2)
  
Significant
Unobservable
Inputs
(Level 3)
 
Cash equivalents
 
$
133,233
  
$
133,233
  
$
  
$
 
Corporate debt securities (1)
  
407,897
   
   
407,897
   
 
Debt securities issued by U.S. government agencies
  
64,432
   
   
64,432
   
 
Debt securities issued by the U.S. Treasury
  
15,328
   
15,328
   
   
 
Debt securities issued by states of the United States and political subdivisions of the states
  
22,255
   
   
22,255
   
 
Investment in Regulus Therapeutics Inc.
  
52,096
   
52,096
   
   
 
Equity securities (2)
  
1,276
   
1,276
   
   
 
Total
 
$
696,517
  
$
201,933
  
$
494,584
  
$
 

(1)Includes investments classified as cash equivalents on our condensed consolidated balance sheet.

(2)Included in other current assets on our condensed consolidated balance sheet.

When we hold investments in publicly-held biotechnology companies that are subject to trading restrictions, we calculate a lack of marketability discount on the fair value of the investments and categorize these investments as Level 3. We determine the lack of marketability discount by using a Black-Scholes model to value a hypothetical put option to approximate the cost of hedging the stock until the restriction ended.

In the first quarter of 2014, Achaogen completed an initial public offering. As a result, we stopped using the cost method of accounting for our equity investment in Achaogen and instead we began accounting for it at fair value. Until September 2014, the fair value of our investment in Achaogen included a lack of marketability discount because there were restrictions on when we could trade the securities. In September 2014, we reclassified our investment in Achaogen to a Level 1 investment because the contractual trading restrictions on the shares we own had ended.

The following is a summary of our investments measured at fair value on a recurring basis using significant unobservable inputs (Level 3) for the nine months ended September 30, 2014 (in thousands):
   
Beginning balance of Level 3 investments
 
$
-
 
   Total gain included in accumulated other comprehensive income (loss)
  
1,231
 
   Transfers out of Level 3 investments
  
(1,231
)
Ending balance of Level 3 investments
 
$
-
 

Other Fair Value Disclosures

Our 2¾ percent convertible notes had a fair value of $490.0 million at September 30, 2014.  We determine the fair value of our 2¾ percent convertible notes based on quoted market prices for these notes, which is a Level 2 measurement.