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Income Taxes - Expense (Details) - USD ($)
$ in Thousands
6 Months Ended 12 Months Ended
Dec. 31, 2016
Dec. 31, 2017
Jun. 30, 2016
Jun. 30, 2015
Reconciliation of the expected statutory tax benefit to the actual income taxes        
U.S. federal corporate tax rate (as a percent)   34.00%    
Loss before income tax expense $ (78,883) $ (96,012) $ (144,817) $ (60,739)
Expected tax benefit at 34% (26,820) (32,644) (49,238) (20,651)
Permanent differences 15 25 345 818
Incentive stock options 1,313 1,528 2,501 1,948
State tax benefit net of federal benefit (4,157) (3,537) (7,954) (3,252)
Change in valuation allowance, net 32,922 (63,238) 62,505 27,940
Federal research credit (1,232) (2,204) (4,109) (1,407)
Federal orphan drug credit (2,901) (7,118) (4,241) (5,471)
Expired loss and credit carryforwards     184 $ 75
Change in U.S. tax law   97,479    
Debt inducement   8,044    
Stock option expirations $ 860 $ 1,665 $ 7