EXHIBIT 32.1

CERTIFICATION OF CHIEF EXECUTIVE OFFICER AND CHIEF FINANCIAL OFFICER PURSUANT TO
SECTION 906 OF THE SARBANES-OXLEY ACT OF 2002 (18 U.S.C. SECTION 1350)

     In connection with the Quarterly Report of FSI International, Inc, a Minnesota corporation (the “Company”), on Form 10-Q for the quarter ended November 25, 2006 as filed with the Securities and Exchange Commission (the “Report”), each of the undersigned hereby certifies, pursuant to § 906 of the Sarbanes-Oxley Act of 2002 (18 U.S.C. § 1350), that to the undersigned’s knowledge:

     (1) The Report fully complies with the requirements of section 13(a) or 15(d) of the Securities Exchange Act of 1934; and

     (2) The information contained in the Report fairly presents, in all material respects, the financial condition and result of operations of the Company.

Date: January 4, 2007
	/s/ Donald S. Mitchell
	Donald S. Mitchell
	Chairman, President and Chief Executive Officer
	/s/ Patricia M. Hollister
	Patricia M. Hollister
	Chief Financial Officer and Assistant Secretary