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Income Taxes (Details) (USD $)
12 Months Ended
Dec. 31, 2013
Dec. 31, 2012
Dec. 31, 2011
Jan. 18, 2013
Income Taxes [Abstract]        
Income tax provision (benefit) $ (362,000) $ 0 $ 0  
Deferred tax assets and liabilities [Abstract]        
Depreciation and amortization 6,165,000 6,497,000    
R&E tax credit carry-forwards 5,129,000 11,843,000    
NYS investment tax credit carry-forwards 1,095,000 1,084,000    
AMT credit carry-forwards 211,000 211,000    
Net operating loss carry-forwards 190,263,000 112,966,000    
Capitalized research and development expenditures 25,231,000 30,884,000    
Stock compensation 13,826,000 14,436,000    
Other items 1,097,000 2,193,000    
Total gross deferred tax assets 243,017,000 180,114,000    
Less: Valuation allowance (243,017,000) (178,045,000)    
Deferred tax assets 0 2,069,000    
Deferred tax liability - current 0 (2,069,000)    
Deferred tax liability - long term (12,321,000) 0   (12,683,000)
Net deferred tax asset (liability) (12,321,000) 0    
Deferred tax assets, net, current   17,000    
Deferred tax assets, net, noncurrent 0 2,052,000    
Reconciliation of income taxes computed at the Federal statutory income tax rate to the actual effective income tax [Abstract]        
U.S. Federal statutory rate (in hundredths) (34.00%) (35.00%) 35.00%  
State income taxes, net of Federal benefit (in hundredths) (4.90%) (5.40%) 8.00%  
Research and experimental tax credit (in hundredths) (3.60%) 0.00% (4.10%)  
Change in valuation allowance (in hundredths) 11.40% 34.70% (22.60%)  
Effect of federal tax rate bracket change on valuation allowance (in hundredths) 8.70% 0.00% (34.80%)  
Equity compensation (in hundredths) 3.10% 4.20% 17.00%  
Investment tax credit (in hundredths) (0.10%) 0.00% (0.10%)  
NOL expiration - Section 382 18.60% 0.00% 0.00%  
Other (in hundredths) 0.00% 1.50% 1.60%  
Income tax provision (benefit) (in hundredths) (0.80%) 0.00% 0.00%  
Net operating loss carryforwards - federal 513,800,000      
Net operating loss carryforwards - state 453,100,000      
Unrecognized tax benefit amount that would affect effective tax rate 0      
Net operating loss carry-forwards not reflected in deferred tax assets 18,200,000      
Valuation allowance related to net operating loss carryforwards attributable to excess tax deductions for equity compensation 11,200,000      
Unrecognized tax benefits (362,000) 0 0  
Tax credit carryforwards of R&E expired 20,000      
Deferred tax assets 0 2,069,000    
Deferred Tax Liabilities, Net, Current 0 2,069,000    
Deferred tax liability - long term 12,321,000 0   12,683,000
Tax Credit Carryforward, Amount 5,100,000      
Income Taxes [Abstract]        
Unrecognized tax benefits 2,661,000 2,661,000    
Current year - increases 0      
Current year - decreases 0      
Settlements 0      
Expired statuses $ 0