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Consolidated Statements of Cash Flows (Unaudited) (USD $)
In Thousands
6 Months Ended
Jun. 30, 2011
Jun. 30, 2010
Operating activities    
Net income $ 45,621 $ 52,303
Adjustments to reconcile net income to net cash provided by operating activities:    
Depreciation and amortization 22,886 22,628
Amortization of premiums on investments, net of accretion of discounts 5,209 4,523
Stock-based compensation 12,859 12,338
Excess tax benefit from employee stock-based compensation (3,916) (919)
Deferred revenue 12 (1,241)
Deferred income tax (1,632) (1,930)
Gain on contingent consideration   (6,082)
Loss on disposal of property and equipment 207 143
Changes in assets and liabilities:    
Trade and other accounts receivable 4,290 (1,494)
Inventories (540) 2,998
Prepaid expenses (4,205) 1,907
Other current assets 44 918
Other long-term assets (453) 390
Accounts payable (3,417) (7,082)
Accrued salaries and employee benefits (3,999) (4,336)
Other accrued expenses 342 (1,086)
Income tax payable 11,437 8,530
Other long-term liabilities 769 (684)
Net cash provided by operating activities 85,514 81,824
Investing activities    
Proceeds from sales and maturities of marketable securities 223,439 281,958
Purchases of marketable securities (162,258) (168,395)
Purchases of property, plant and equipment (23,245) (14,567)
Purchases of capitalized software (2,547) (1,457)
Purchases of intangible assets, including licenses and manufacturing access fees (4,424) (1,865)
Cash paid for investment in Pacific Biosciences   (50,000)
Cash paid for investment in Roka Biosciences (3,980)  
Other (348) (1,967)
Net cash provided by investing activities 26,637 43,707
Financing activities    
Repurchase and retirement of common stock (47,972) (52,299)
Proceeds from issuance of common stock and employee stock purchase plan 40,727 20,062
Repurchase and retirement of restricted stock for payment of taxes (363) (43)
Excess tax benefit from employee stock-based compensation 3,916 919
Borrowings, net 8,000  
Net cash provided by (used in) financing activities 4,308 (31,361)
Effect of exchange rate changes on cash and cash equivalents 570 (1,864)
Net increase in cash and cash equivalents 117,029 92,306
Cash and cash equivalents at the beginning of period 59,690 82,616
Cash and cash equivalents at the end of period $ 176,719 $ 174,922