10-Q

UNITED STATES

SECURITIES AND EXCHANGE COMMISSION

Washington, D.C. 20549

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FORM 10-Q

———————

þ   QUARTERLY REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934

For the quarterly period ended: September 30, 2014

Or

o TRANSITION REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934

For the transition period from                                                      to

Commission File Number: 00-51354

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AEMETIS, INC.

 (Exact name of registrant as specified in its charter)

———————

Nevada	26-1407544
(State or other jurisdiction	(I.R.S. Employer
of incorporation or organization)	Identification No.)

20400 Stevens Creek Blvd., Suite 700

Cupertino, CA 95014

 (Address of Principal Executive Offices, including zip code)

(408) 213-0940

 (Registrant’s telephone number, including area code)

———————

Indicate by check mark whether the registrant (1) has filed all reports required to be filed by Section 13 or 15(d) of the Securities Exchange Act of 1934 during the preceding 12 months (or for such shorter period that the registrant was required to file such reports), and (2) has been subject to such filing requirements for the past 90 days.

Yes  þ     No o

Indicate by check mark whether the registrant has submitted electronically and posted on its corporate Web site, if any, every Interactive Data File required to be submitted and posted pursuant to Rule 405 of Regulation S-T (§232.405 of this chapter) during the preceding 12 months (or for such shorter period that the registrant was required to submit and post such files).   Yes  þ    No o

Indicate by check mark whether the registrant is a large accelerated filer, an accelerated filer, a non-accelerated filer, or a smaller reporting company. See the definitions of "large accelerated filer," "accelerated filer" and "smaller reporting company" in Rule 12b-2 of the Exchange Act. (Check one):

Large accelerated filer    o    Accelerated filer    o     Non-accelerated filer   o   Smaller reporting company   þ

Indicate by check mark whether the registrant is a shell company (as defined in Rule 12b-2 of the Exchange Act).  Yes o   No þ

The number of shares outstanding of the registrant’s Common Stock on November 5, 2014 was 20,612,110 shares.

AEMETIS, INC.

FORM 10-Q

Quarterly Period Ended September 30, 2014

INDEX

PART I--FINANCIAL INFORMATION

Item 1	Financial Statements	4
Item 2.	Management's Discussion and Analysis of Financial Condition and Results of Operations	27
Item 3.	Quantitative and Qualitative Disclosures about Market Risk	36
Item 4.	Controls and Procedures	37
	PART II--OTHER INFORMATION
Item 1.	Legal Proceedings	37
Item 1A.	Risk Factors	38
Item 2.	Unregistered Sales of Equity Securities and Use of Proceeds.	40
Item 3.	Defaults Upon Senior Securities	40
Item 4.	Mine Safety Disclosures	40
Item 5.	Other Information	40
Item 6.	Exhibits	41
Signatures		42

2

SPECIAL NOTE REGARDING FORWARD—LOOKING STATEMENTS

On one or more occasions, we may make forward-looking statements in this Quarterly Report on Form 10-Q, including statements regarding our assumptions, projections, expectations, targets, intentions or beliefs about future events or other statements that are not historical facts.  Forward-looking statements in this Quarterly Report on Form 10-Q, include without limitation, statements regarding trends in demand for renewable fuels; trends in market conditions with respect to prices for inputs for our products verses prices for our products; our ability to leverage approved feedstock pathways; our location and infrastructure; our ability to incorporate lower-cost, non-food advanced biofuels feedstock at the Keyes plant; our ability to adopt value-add byproduct processing systems; our ability to expand into alternative markets for  biodiesel and its byproducts, including continuing to expand our sales into international markets; the impact of changes in regulatory policies on our performance, including the Indian government’s recent changes to tax policies, diesel prices and related subsidies; our ability to continue to develop new, and to maintain and protect  new and existing, intellectual property rights; our ability to adopt, develop and commercialize new technologies; our ability to refinance our senior debt on more commercial terms or at all; our ability to continue to fund operations; our ability to sell additional notes under our EB-5 note program; our ability to improve margins; release of EB-5 loan funds from escrow; anticipated costs for construction of the Liquid CO2 facility; and our ability to raise additional capital.  Words or phrases such as “anticipates,” “may,” “will,” “should,” “believes,” “estimates,” “expects,” “intends,” “plans,” “predicts,” “projects,” “targets,” “will likely result,” “will continue” or similar expressions are intended to identify forward-looking statements.  These forward-looking statements are based on current assumptions and predictions and are subject to numerous risks and uncertainties.  Actual results or events could differ materially from those set forth or implied by such forward-looking statements and related assumptions due to certain factors, including, without limitation, the risks set forth under the caption “Risk Factors” below, which are incorporated herein by reference as well as those business risks and factors described elsewhere in this report and in our other filings with the Securities and Exchange Commission (the “SEC”), including without limitation, our most recent Annual Report on Form 10-K.

Unless the context requires otherwise, references to “we,” “us,” “our,” and “the Company” refer specifically to Aemetis, Inc. and its subsidiaries.

3

PART I - FINANCIAL INFORMATION

Item 1 - Financial Statements.

AEMETIS, INC.

CONSOLIDATED CONDENSED BALANCE SHEETS

(In thousands except for par value)

	September 30, 2014			December 31, 2013
Assets	(Unaudited)
Current assets:
Cash and cash equivalents	$	5,494		$	4,926
Accounts receivable		438			2,764
Inventories		5,178			4,098
Prepaid expenses		866			584
Other current assets		619			335
Total current assets		12,595			12,707
Property, plant and equipment, net		77,048			78,928
Goodwill		968			968
Intangible assets, net of accumulated amortization of $244 and $184,  respectively		1,556			1,616
Other assets		2,938			2,923
Total assets	$	95,105		$	97,142
Liabilities and stockholders' equity (deficit)
Current liabilities:
Accounts payable	$	9,018		$	9,366
Current portion of long term debt		5,950			10,257
Short term borrowings		10,496			7,709
Mandatorily redeemable Series B convertible preferred stock		2,616			2,540
Other current liabilities		4,909			6,245
Total current liabilities		32,989			36,117
Long term debt		61,177			73,792
Other long term liability		292			-
Total long term  liabilities		61,469			73,792
Stockholders' equity (deficit):
Series B convertible preferred stock, $0.001 par value; 7,235 authorized; 2,032 and 2,401 shares issued and outstanding each period, respectively (aggregate liquidation preference of $6,096 and $7,203, respectively)		2			2
Common stock, $0.001 par value; 40,000 authorized; 20,610 and 19,974 shares issued and outstanding, respectively *		21			20
Additional paid-in capital *		86,903			84,373
Accumulated deficit		(83,373	)		(94,246	)
Accumulated other comprehensive loss		(2,906	)		(2,916	)
Total stockholders' equity (deficit)		647			(12,767	)
Total liabilities and stockholders' equity (deficit)	$	95,105		$	97,142
* The Common Stock and Additional paid-in capital for all periods presented reflect the one-for-ten reverse split, which took effect May 15, 2014.

The accompanying notes are an integral part of the financial statements.

4

AEMETIS, INC.

CONSOLIDATED CONDENSED STATEMENTS OF OPERATIONS AND COMPREHENSIVE

INCOME / (LOSS)

(Unaudited, in thousands except for earnings per share)

	For the three months ended September 30,						For the nine months ended September 30,
	2014			2013			2014			2013
Revenues	$	48,348		$	56,688		$	166,208		$	123,461
Cost of goods sold		40,633			53,652		$	131,516		$	116,427
Gross profit		7,715			3,036			34,692			7,034
Research and development expenses		101			115			342			468
Selling, general and administrative expenses		2,972			3,879			9,263			12,078
Operating income/(loss)		4,642			(958	)		25,087			(5,512	)
Other income/(expense)
Interest expense
Interest rate expense		(2,287	)		(2,933	)		(7,737	)		(8,516	)
Amortization expense		(741	)		(2,020	)		(5,361	)		(10,366	)
Loss on debt extinguishment		(1,231	)		(2,521	)		(1,346	)		(3,709	)
Gain (loss) on sale/disposal  of assets		-			108			(119	)		282
Other income		81			35			355			132
Income (loss) before income taxes		464			(8,289	)		10,879			(27,689	)
Income tax expense		-			-			(6	)		(6	)
Net  income (loss)		464			(8,289	)		10,873			(27,695	)
Other comprehensive income
Foreign currency translation adjustment		(98	)		(275	)		10			(675	)
Comprehensive income (loss)	$	366			(8,564	)	$	10,883		$	(28,370	)
Net income(loss) per common share *
Basic	$	0.02		$	(0.43	)	$	0.54		$	(1.47	)
Diluted	$	0.02		$	(0.43	)	$	0.52		$	(1.47	)
Weighted average shares outstanding *
Basic		20,555			19,390			20,284			18,863
Diluted		21,476			19,390			20,946			18,863

* The Earnings per share and Weighted average shares outstanding for all periods presented reflect the one-for-ten reverse split, which took effect May 15, 2014.

The accompanying notes are an integral part of the financial statements.

5

AEMETIS, INC.

CONSOLIDATED CONDENSED STATEMENTS OF CASH FLOWS

 (Unaudited, in thousands)

		For the nine months ended September 30,
		2014			2013
Operating activities:
Net income (loss)	$	10,873		$	(27,695	)
Adjustments to reconcile net income (loss) to net cash provided by (used in) operating activitites:
Share-based compensation		447			1,585
Depreciation		3,486			3,471
Debt related amortization expense		5,361			10,366
Intangibles and other amortization expense		95			164
Change in fair value of warrant liability		102			(197	)
Loss on extinguishment of debt		1,346			3,709
(Gain) loss on sale/ Disposal of assets		119			(282	)
Changes in operating assets and liabilities:
Accounts receivable		2,330			(704	)
Inventory		(1,112	)		(675	)
Prepaid expenses		432			149
Other current assets and other assets		(341	)		(332	)
Accounts payable		(308	)		(3,231	)
Accrued interest expense and fees, net of payments		667			8,494
Other liabilities		(1,487	)		(908	)
Net cash provided by (used in) operating activities		22,010			(6,086	)
Investing activities:
Capital expenditures		(1,834	)		(429	)
Proceeds from the sale of assets		99			1,175
Net cash (used in) provided by investing activities		(1,735	)		746
Financing activities:
Proceeds from borrowings		8,070			8,830
Repayments of borrowings		(27,721	)		(3,617	)
Issuance of common stock for services, option and warrant exercises		5			1,082
Net cash (used in) provided by financing activities		(19,646	)		6,295
Effect of exchange rate changes on cash and cash equivalents		(61	)		(133	)
Net cash and cash equivalents increase for period		568			822
Cash and cash equivalents at beginning of period		4,926			291
Cash and cash equivalents at end of period	$	5,494		$	1,113
Supplemental disclosures of cash flow information, cash paid:
Interest payments	$	6,751		$	2,068
Income tax expense		6			6
Supplemental disclosures of cash flow information, non-cash transactions:
Proceeds from exercise of stock options applied to accounts payable		16			-
Issuance of warrants to subordinated debt holders		1,301			1,127
Transfer between debt and other liabilities		438			-
Stock issued in connection with services		715			-
Payments of principal, fees and interest paid in stock		-			3,211
Issuance of shares to related party for repayment of line of credit		-			822
Issuance of warrants to non-employees to secure procurement and working capital		-			336
Other asset transferred to related party		-			170
Warrant liability transferred to equity upon exercise		-			1,007
Exercise of conversion feature on note to equity		47			-

The accompanying notes are an integral part of the financial statements.

6

AEMETIS, INC.

NOTES TO CONSOLIDATED CONDENSED FINANCIAL STATEMENTS

(Unaudited, tabular data in thousands except par value and per share data)

1.         Nature of Activities and Summary of Significant Accounting Policies

Nature of Activities. These consolidated financial statements include the accounts of Aemetis, Inc., a Nevada corporation, and its wholly owned subsidiaries (collectively, “Aemetis” or the “Company”):

● Aemetis Americas, Inc., a Nevada corporation and its subsidiary AE Biofuels, Inc., a Delaware corporation;

● Biofuels Marketing, Inc., a Delaware corporation;

● Aemetis International, Inc., a Nevada corporation and its subsidiary International Biofuels, Ltd., a Mauritius corporation and its subsidiary Universal Biofuels Private, Ltd., an India company;

● Aemetis Technologies, Inc., a Delaware corporation;

● Aemetis Biochemicals, Inc., a Nevada corporation;

● Aemetis Biofuels, Inc., a Delaware corporation and its subsidiary Energy Enzymes, Inc., a Delaware corporation;

● AE Advanced Fuels, Inc., a Delaware corporation and its subsidiaries Aemetis Advanced Fuels Keyes, Inc., a Delaware corporation and Aemetis Facility Keyes, Inc., a Delaware corporation;

● Aemetis Advanced Fuels, Inc., a Nevada corporation; and,

● Aemetis Advanced Products Keyes, Inc., a Delaware corporation.

Aemetis is an advanced renewable fuels and biochemicals company focused on the acquisition, development and commercialization of innovative technologies that replace traditional petroleum-based products by the conversion of first generation ethanol and  biodiesel plants into advanced biorefineries.  The Company owns and operates a plant in Keyes, California where the Company manufactures and produces ethanol, wet distillers’ grain (WDG), condensed distillers solubles (CDS) and corn oil and a manufacturing and refining facility in Kakinada, India where the Company manufactures and produces fatty acid methyl ester ( biodiesel), crude and refined glycerin and refined palm oil.  In September 2013, the Company received approval by the US Environmental Protection Agency to produce ethanol using grain sorghum and biogas along with the Keyes plant existing combined heat and power systems to generate higher value D5 Advanced Biofuel Renewable Identification Numbers (RIN’s).  In April 2014, the Company received the International Sustainability and Carbon Certification for the production of  biodiesel at the India plant from certain oils and fats for sale into European markets.  The Company completed the EPA Process for importation of our India biodiesel into the United States. In addition, the Company is continuing  research and development focused on microbial technologies for the commercialization of renewable industrial biofuels and biochemicals.

Basis of Presentation and Consolidation. The consolidated condensed financial statements include the accounts of Aemetis, Inc. and its subsidiaries. All intercompany balances and transactions have been eliminated in consolidation. The accompanying consolidated condensed balance sheet as of September 30, 2014, the consolidated condensed statements of operations and comprehensive income (loss) for the three and nine months ended September 30, 2014 and 2013, and the consolidated condensed statements of cash flows for the nine months ended September 30, 2014 and 2013 are unaudited. The consolidated condensed balance sheet as of December 31, 2013 was derived from the 2013 audited consolidated financial statements and notes thereto. The consolidated condensed financial statements in this report should be read in conjunction with the 2013 audited consolidated financial statements and notes thereto included in the Company’s annual report on Form 10-K for the year ended December 31, 2013.

The accompanying consolidated condensed financial statements have been prepared in accordance with accounting principles generally accepted in the United States (U.S. GAAP) and pursuant to the rules and regulations of the SEC. Certain information and footnote disclosures normally included in financial statements prepared in accordance with U.S. GAAP have been condensed or omitted pursuant to such rules and regulations.

In the opinion of management, the unaudited interim consolidated condensed financial statements for the three and nine months ended September 30, 2014 and 2013 have been prepared on the same basis as the audited consolidated statements as of December 31, 2013 and reflect all adjustments, consisting primarily of normal recurring adjustments, necessary for the fair presentation of its statement of financial position, results of operations and cash flows. The results of operations for the three and nine months ended September 30, 2014 are not necessarily indicative of the operating results for any subsequent quarter, for the full fiscal year or any future periods.

7

AEMETIS, INC.

NOTES TO CONSOLIDATED CONDENSED FINANCIAL STATEMENTS

(Unaudited, tabular data in thousands except par value and per share data)

Reverse Stock Split. In April 2014, our board of directors approved, and submitted a proposal to our stockholders for approval of a 1 for 10 reverse split of our common stock (the “Reverse Stock Split”).  The Reverse Stock Split was intended to increase the market price of our common stock to enhance our ability to meet the initial listing requirements of the NASDAQ Global Market and to make our common stock more attractive to a broader range of institutional and other investors.  Our stockholders approved the Reverse Stock Split on May 9, 2014 and we filed a Certificate of Change with the Secretary of State of the State of Nevada to effect the Reverse Stock Split on May 9, 2014.  The Reverse Stock Split became effective with the Financial Industry Regulatory Authority (FINRA) on May 15, 2014. Trading on the NASDAQ Global Market commenced on June 5, 2014.
 

Upon the effectiveness of the Reverse Stock Split, every ten shares of issued and outstanding and authorized Aemetis common stock was automatically combined into one share of common stock with any fractional shares rounded up to the next whole share and without any change in the per share par value.  The Reverse Stock Split reduced the number of outstanding shares of Aemetis common stock from approximately 201.7 million shares to approximately 20.2 million shares.  The authorized shares of Aemetis common stock were also proportionally reduced from 400 million shares to 40 million shares.

Unless otherwise indicated, all share amounts, per share data, share prices, exercise prices and conversion rates set forth in these notes and the accompanying consolidated financial statements have, where applicable, been adjustedto reflect the Reverse Stock Split.

Use of Estimates.  The preparation of financial statements in conformity with U.S. GAAP requires management to make estimates and assumptions that affect the reported amounts of assets and liabilities and disclosure of contingent assets and liabilities at the date of the financial statements and revenues and expenses during the reporting period.  To the extent there are material differences between these estimates and actual results, the Company’s consolidated financial statements will be affected.

Revenue recognition. The Company recognizes revenue when there is persuasive evidence of an arrangement, delivery has occurred, the price is fixed or determinable and collection is reasonably assured. The Company records revenues based upon the gross amounts billed to its customers. Revenue from nonmonetary transactions, principally in-kind by-products received in exchange for material processing where the by-product is contemplated by contract to provide value, is recognized at the quoted market price of those goods received or by-products.

Cost of Goods Sold. Cost of goods sold includes those costs directly associated with the production of revenues, such as raw material, factory overhead and other direct production costs.  During periods of idle plant capacity, costs otherwise charged to cost of goods sold are reclassified to selling, general and administrative expense.

Shipping and Handling Costs. Shipping and handling costs are classified as a component of cost of goods sold in the accompanying consolidated statements of operations.

Reclassifications. Certain prior quarter amounts were reclassified to conform to current period presentation. These reclassifications had no impact on previously reported net loss or accumulated deficit.

Research and Development. Research and development costs are expensed as incurred, unless they have alternative future uses to the Company.

Cash and Cash Equivalents. The Company considers all highly liquid investments with an original maturity of three months or less to be cash equivalents. The Company maintains cash balances at various financial institutions domestically and abroad. The Federal Deposit Insurance Corporation (FDIC) insures domestic cash accounts. The Company’s accounts at these institutions may at times exceed federally insured limits. The Company has not experienced any losses in such accounts.

8

AEMETIS, INC.

NOTES TO CONSOLIDATED CONDENSED FINANCIAL STATEMENTS

(Unaudited, tabular data in thousands except par value and per share data)

Accounts Receivable.  The Company sells ethanol, wet distiller grains, condensed distillers solubles  and corn oil directly and through third-party marketing arrangements generally without requiring collateral.  The Company sells  biodiesel, glycerin and processed natural oils to a variety of customers and may require advanced payment based on the size and creditworthiness of the customer.  Accounts receivable consist of product sales made to large creditworthy customers. Trade accounts receivable are presented at original invoice amount, net of the allowance for doubtful accounts.

The Company maintains an allowance for doubtful accounts for balances that appear to have specific collection issues. The collection process is based on the age of the invoice and requires attempted contacts with the customer at specified intervals. If, after a specified number of days, the Company has been unsuccessful in its collection efforts, a bad debt allowance is recorded for the balance in question. Delinquent accounts receivable are charged against the allowance for doubtful accounts once a lack of collectability has been determined. The factors considered in reaching this determination are the apparent financial condition of the customer and the Company’s success in contacting and negotiating with the customer. If the financial condition of the Company’s customers were to deteriorate, additional allowances may be required.

Inventories. Inventories are stated at the lower of cost, using the first-in and first-out (FIFO) method, or market.

Property, Plant and Equipment. Property, plant and equipment are carried at cost less accumulated depreciation after assets are placed in service and are comprised primarily of buildings, furniture, machinery, equipment, land, and plants in North America and India. When property, plant and equipment are acquired as part of an acquisition, the items are recorded at fair value on the purchase date. It is the Company policy to depreciate capital assets over their estimated useful lives using the straight-line method.

Goodwill and Intangible Assets. Intangible assets consist of intellectual property in the form of patents pending, in-process research and development and goodwill. Once the patents pending or in-process R&D have secured a definite life in the form of a patent or product, they will be carried at cost less accumulated amortization over their estimated useful life. Amortization commences upon the commercial application or generation of revenue and is amortized over the shorter of the economic life or patent protection period.

Company intangible assets such as goodwill have indefinite lives and as a result need to be evaluated at least annually, or more frequently, if impairment indicators arise. In the Company’s review, the Company determines the fair value of the reporting unit using market indicators and discounted cash flow modeling. The Company compares the fair value to the net book value of the reporting unit. An impairment loss is recognized when the fair value is less than the related net book value, and an impairment expense is recorded in the amount of the difference. Forecasts of future cash flows are judgments based on the Company’s experience and knowledge of the Company’s operations and the industries in which the Company operates. These forecasts could be significantly affected by future changes in market conditions, the economic environment, including inflation, and the purchasing decisions of the Company’s customers. No indicators warranting reevaluation arose during the three months ended September 30, 2014.

California Ethanol Producer Incentive Program.  The Company is eligible to participate in the California Ethanol Producer Incentive Program (“CEPIP”). Under the CEPIP an eligible California ethanol facility may receive up to $3 million in cash per plant per year of operations through 2013 when current production corn crush spreads, measured as the difference between specified ethanol and corn index prices, drop below $0.55 per gallon.  The California Energy Commission determines on an annual basis the funding allocated to the program.  No funds were allocated to this program during the government’s 2012 fiscal year.  For any month in which a payment is made by the CEPIP, the Company may be required to reimburse the funds within the subsequent five years from each payment date, if the corn crush spreads exceed $1.00 per gallon. Since these funds are provided to subsidize current production costs and encourage eligible facilities to either continue production or start up production in low margin environments, the Company records the proceeds, if any, as a credit to cost of goods sold. With respect to CEPIP payments received and applied as reductions to cost of goods sold, the Company recorded none for the three and nine months ended September 30, 2014 and 2013, respectively. The strength of the crush spread resulted in the accrual and obligation to repay CEPIP funding in the amount of $1.8 million, the entire remaining amount of funds received from the program. As of September 30, 2014 and December 31, 2013, the Company carried an obligation of $1.1 million and $0.1 million. As a result of the current accrual, there are no further contingent liabilities related to this program.

9

AEMETIS, INC.

NOTES TO CONSOLIDATED CONDENSED FINANCIAL STATEMENTS

(Unaudited, tabular data in thousands except par value and per share data)

Basic and Diluted Net Income (Loss) per Share.  Basic income (loss) per share is computed by dividing income or loss attributable to common shareholders by the weighted average number of common shares outstanding for the period.  Diluted income (loss) per share reflects the dilution of common stock equivalents such as options, convertible preferred stock, debt and warrants to the extent the impact is dilutive.  As the Company incurred net income for the three and nine months ended September 30, 2014, potentially dilutive securities have been included in the diluted net income per share computations and any potentially anti-dilutive shares have been excluded and are shown below. As the Company incurred net loss for the three and nine months ended September 30, 2013, potentially dilutive securities have been excluded from the diluted net loss per share computations as their effect would be anti-dilutive.

The following table reconciles the number of shares utilized in the net income (loss) per share calculations for three and nine months ended September 30, 2014 and 2013:

	Three months ended Level 1					Nine months ended
		September 30, 2014		September 30, 2013			September 30, 2014		September 30, 2013
		(In thousands, except per share amounts					(In thousands, except per share amounts
Net income (loss)	$	464	$	(8,289	)	$	10,873	$	(27,695	)
Shares:
Weighted average shares outstanding—basic		20,555		19,390			20,284		18,863
Weighted average dilutive share equivalents from preferred shares		217		-			231		-
Weighted average dilutive share equivalents from stock options		460		-			242		-
Weighted average dilutive share equivalents from common warrants		244		-			189		-
Weighted average shares outstanding—diluted		21,476		19,390			20,946		18,863
Earnings (loss) per share—basic	$	0.02	$	(0.43	)	$	0.54	$	(1.47	)
Earnings (loss) per share—diluted	$	0.02	$	(0.43	)	$	0.52	$	(1.47	)

The following table shows the number of potentially dilutive shares excluded from the diluted net income (loss) per share calculation as of September 30, 2014 and September 30, 2013:

	As of
	September 30, 2014		September 30, 2013
Series B preferred		-		3,021
Common stock options and warrants		30		1,531
Convertible promissory note		-		18
Total number of potentially dilutive shares excluded from the basic and diluted net income (loss) per share calculation		30		4,570

10

AEMETIS, INC.

NOTES TO CONSOLIDATED CONDENSED FINANCIAL STATEMENTS

(Unaudited, tabular data in thousands except par value and per share data)

Comprehensive Income. ASC 220 Comprehensive Income requires that an enterprise report, by major components and as a single total, the change in its net assets from non-owner sources. The Company’s other comprehensive income and accumulated other comprehensive income consists solely of cumulative currency translation adjustments resulting from the translation of the financial statements of its foreign subsidiaries. The investment in these subsidiaries is considered indefinitely invested overseas, and as a result, deferred income taxes are not recorded for the currency translation adjustments.

Foreign Currency Translation/Transactions. Assets and liabilities of the Company’s non-U.S. subsidiaries that operate in a local currency environment, where that local currency is the functional currency, are translated into U.S. dollars at exchange rates in effect at the balance sheet date; with the resulting translation adjustments directly recorded to a separate component of accumulated other comprehensive income. Income and expense accounts are translated at average exchange rates during the year. Gains and losses from foreign currency transactions are recorded in other income.

Operating Segments. Operating segments are defined as components of an enterprise about which separate financial information is available that is evaluated regularly by the chief operating decision maker, or decision-making group, in deciding how to allocate resources and in assessing performance. Aemetis recognizes two reportable geographic segments: “North America” and “India.”

The “North America” operating segment includes the Company’s 55 million gallon per year nameplate capacity ethanol plant in Keyes, California and the research facilities in College Park, Maryland.

The “India” operating segment encompasses the Company’s 50 million gallon per year nameplate capacity  biodiesel plant in Kakinada, India, the administrative offices in Hyderabad, India, and the holding companies in Nevada and Mauritius.

Fair Value of Financial Instruments. The Company’s financial instruments include cash and cash equivalents, accounts receivable, and accounts payable, other current liabilities, mandatorily redeemable Series B preferred stock, warrant liability and debt. The fair value of current financial instruments was estimated to approximate carrying value due to the short term nature of these instruments. The carrying amount of debt obligations, including discount issuance costs, held by the senior lender, subordinated debt and the seller note payable, at September 30, 2014 amounted to an aggregate of approximately $64.6 million in outstanding obligations. The debts were determined to have an estimated fair value of $62.0 million based on interest rates for comparable debt.  The Company’s debt was valued using inputs from independent consultants evaluating external market inputs and internal financings to determine appropriate discount rates to determine fair value.  It was not practicable to determine the fair market value of the Company’s remaining debt obligations due to the lack of availability of comparable credit facilities and the related party nature of the financial arrangements.  The warrant liability fair value was estimated using the Black-Scholes valuation pricing model at the end of each reporting period.

Share-Based Compensation. The Company recognizes share based compensation in accordance with ASC 718 Stock Compensation requiring the Company to recognize expense related to the estimated fair value of the Company’s share-based compensation awards at the time the awards are granted adjusted to reflect only those shares that are expected to vest. To estimate the discount for lack of marketability on restricted stock issued, the Company uses the Black-Scholes valuation pricing model, which assists in deriving the implied price of put options using the put-call parity principle.  The price of the put option divided by the market price quoted on the NASDAQ Global Market implies the discount for lack of marketability in valuing issued shares to consultants, debt holders, employees or affiliated investors.

Warrant liability: The Company adopted guidance related to distinguishing liabilities from equity for certain warrants which contain a conditional obligation to repurchase feature. The Company estimates the fair value of future liability on warrants using the Black-Scholes pricing model. Assumptions within the pricing model include: 1) the risk-free interest rate, which comes from the U.S. Treasury yield curve for periods within the contractual life of the warrant 2) the expected life of the warrants is assumed to be the contractual life of the warrants, and, 3) the volatility is estimated based on an average of the historical volatilities.

11

AEMETIS, INC.

NOTES TO CONSOLIDATED CONDENSED FINANCIAL STATEMENTS

(Unaudited, tabular data in thousands except par value and per share data)

The Company computes the fair value of the warrant liability at each reporting period and the change in the fair value is recorded through earnings. The key component in the value of the warrant liability is the Company's stock price, which is subject to significant fluctuation and is not under the Company's control. The resulting effect on the Company's net income (loss) is therefore subject to significant fluctuation and will continue to be so until the warrants are exercised, amended or expired. Assuming all other fair value inputs remain constant, the Company will record non-cash expense when the stock price increases and non-cash income when the stock price decreases.

Long - Lived Assets. The Company evaluates the recoverability of long-lived assets with finite lives in accordance with ASC Subtopic 360-10-35 Property Plant and Equipment –Subsequent Measurements, which requires recognition of impairment of long-lived assets whenever events or changes in circumstances indicate that the carrying amount of an asset may not be recoverable. When events or changes in circumstances indicate that the carrying amount of an asset may not be recoverable, based on estimated undiscounted cash flows, the impairment loss is measured as the difference between the carrying amount of the assets and its estimated fair value.

Commitments and Contingencies.The Company records and/or discloses commitments and contingencies in accordance with ASC 450 Contingencies.  ASC 450 applies to an existing condition, situation, or set of circumstances involving uncertainty as to possible loss that will ultimately be resolved when one or more future events occur or fail to occur.

Convertible Instruments.  The Company evaluates the impacts of convertible instruments based on the underlying conversion features.  Convertible Instruments are evaluated for treatment as derivatives that could be bifurcated and recorded separately.  Any beneficial conversion feature is recorded based on the intrinsic value difference at the commitment date.

Debt Modification Accounting. The Company evaluates amendments to its debt in accordance with ASC 540-50 Debt – Modification and Extinguishments for modification and extinguishment accounting.  This evaluation includes comparing the net present value of cash flows of the new debt to the old debt to determine if changes greater than 10 percent occurred.  In instances where the net present value of future cash flows changes more than 10 percent, the Company applies extinguishment accounting and determines the fair value of its debt based on factors available to the Company. See Note 5 for discussion on debt extinguished during the current period.

2.           Inventory

Inventory consists of the following:

		September 30, 2014		December 31, 2013
Raw materials	$	3,087	$	597
Work-in-progress		1,457		1,724
Finished goods		634		1,777
Total inventory	$	5,178	$	4,098

As of September 30, 2014 and December 31, 2013, the Company recognized a lower of cost or market reserve of $7 thousand and none, respectively, related to inventory.

3.         Property, Plant and Equipment

Property, plant and equipment consist of the following:

12

AEMETIS, INC.

NOTES TO CONSOLIDATED CONDENSED FINANCIAL STATEMENTS

(Unaudited, tabular data in thousands except par value and per share data)

		September 30, 2014			December 31, 2013
Land	$	2,765		$	2,765
Plant and Buildings		82,570			82,355
Furniture and fixtures		488			558
Machinery and equipment		3,989			2,076
Construction in progress		53			539
Total gross property, plant & equipment		89,865			88,293
Less accumulated depreciation		(12,817	)		(9,365	)
Total net property, plant & equipment	$	77,048		$	78,928

Depreciation on the components of the property, plant and equipment is calculated using the straight-line method to allocate their depreciable amounts over their estimated useful lives as follows:

	Years
Plant and Buildings		20 - 30
Machinery & Equipment		5 - 7
Furniture & Fixtures		3 - 5

For the three months ended September 30, 2014 and September 30, 2013, the Company recorded depreciation expense of $1.2 million for each period respectively. For the nine months ended September 30, 2014 and September 30, 2013, the Company recorded depreciation expense of $3.5 million each period, respectively.

Management is required to evaluate these long-lived assets for impairment whenever events or changes in circumstances indicate that their carrying amounts may not be recoverable. Management determined there were no triggering events on the long-lived assets during the three and nine months ended September 30, 2014.

4.        Intangible Assets and Goodwill

Intangible assets and goodwill consist of $1.0 million in patents, $0.6 million in in-process research and development and $1.0 million in goodwill. Following ASC 350-20-35 guidance, goodwill and indefinite lived intangibles are tested annually in December for impairment at the Aemetis Technologies, Inc. reporting unit level.  During the three months ended September 30, 2014 and 2013, the Company recognized amortization expense of $20 thousand each period respectively, related to patents. During the nine months ended September 30, 2014 and 2013, the Company recognized amortization expense of $60 thousand and $164 thousand, respectively, related to patents.

Future patent and in-process research and development amortization for the next five years and beyond consists of the following:

For the twelve months ending September 30,	Amortization
2014	$	104
2015		112
2016		112
2017		112
2018		179
Thereafter		937
Total	$	1,556

13

AEMETIS, INC.

NOTES TO CONSOLIDATED CONDENSED FINANCIAL STATEMENTS

(Unaudited, tabular data in thousands except par value and per share data)

5.         Notes Payable

Debt consists of the notes from our senior lender, Third Eye Capital, acting as Agent for the Purchasers and other secured lenders, other working capital lenders and subordinated lenders as follows:

	September 30, 2014			December 31, 2014
Third Eye Capital term note	$	7,369	$	7,193
Third Eye Capital revolving credit facility		19,095		38,349
Third Eye Capital revenue participation term note		10,162		9,465
Third Eye Capital acquisition term note		17,677		17,280
Cilion shareholder seller note payable		5,335		4,869
State Bank of India secured term loan		5,950		5,857
Subordinated notes		5,265		5,317
EB-5 long term promissory notes		1,538		1,037
Unsecured working capital loans and short-term notes		5,232		2,391
Total debt		77,623		91,758
Less current portion of debt		16,446		17,966
Total long term debt	$	61,177	$	73,792

Third Eye Capital Note Purchase Agreement

On July 6, 2012, Aemetis, Inc. and Aemetis Advanced Fuels Keyes, Inc. (“AAFK”), entered into an Amended and Restated Note Purchase Agreement with Third Eye Capital (the “Note Purchase Agreement”).  Pursuant to the Note Purchase Agreement, Third Eye Capital extended credit in the form of (i) senior secured term loans in an aggregate principal amount of approximately $7.2 million to replace existing notes held by Third Eye Capital (the “Term Notes”); (ii) senior secured revolving loans in an aggregate principal amount of $18.0 million (“Revolving Credit Facility”); (iii) senior secured term loans in the principal amount of $10.0 million to convert the prior revenue participation agreement to a Note (“Revenue Participation Term Notes”); (iv) senior secured term loans in an aggregate principal amount of $15.0 million (“Acquisition Term Notes”) used to fund the cash portion of the acquisition of Cilion, Inc. After this financing transaction, Third Eye Capital obtained sufficient equity ownership in the Company to be considered a related party (the Term Notes, Revolving Credit Facility, Revenue Participation Term Notes and Acquisition Term Notes are referred to herein collectively as, the “Notes”).  Initially, the Acquisition Term Notes and the Revenue Participation Term Notes matured on July 6, 2014, the Term Notes matured on October 18, 2012 and the Revolving Credit Facility matured on July 6, 2013 with extension rights subject to satisfaction of certain conditions.  The Notes have all been amended to extend the maturity date to July 1, 2015*, as described below.

In May 2014, Third Eye Capital agreed to the Limited Waiver and Amendment No. 7 to the Note Purchase Agreement to extend the maturity date of the Notes to July 1, 2015*, to modify the waterfall table, to fix the interest rate of the Term Notes at 14%, and to redefine the operating cash available to the Company for operating expenses. As consideration, the Company is required to pay an additional extension fee of $2.0 million plus an escalating monitoring fee beginning January 2015.

14

AEMETIS, INC.

NOTES TO CONSOLIDATED CONDENSED FINANCIAL STATEMENTS

(Unaudited, tabular data in thousands except par value and per share data)

On November 7, 2014, Third Eye Capital agreed to Amendment No. 8 to the Note Purchase Agreement to extend a line of credit in the amount of $6.0 million available for advance to Aemetis, such advance to be added to the outstanding principal balance of the existing notes under the Note Purchase Agreement. In addition, Third Eye Capital agreed to give Aemetis the right to extend the maturity date of the notes to January 1,2016 upon notice and payment of a 3% extension fee.  Pursuant to the terms of Amendment No.8, Aemetis agreed to a covenant to complete an equity offering of its preferred stock for net proceeds of not less than $20 million with all of such net proceeds to be used to repay the principal outstanding under the Note Purchase Agreement in accordance with the priorities set forth there in.  As consideration for Amendment No.8, the unconditional personal Guaranty from Chairman of the Company, the guaranties from Company parties and McAfee Capital, LLC owned by Mr. Eric McAfee were all reaffirmed. The Company also agreed to pay $0.2 million in consideration to Mr. McAfee and McAfee Capital in exchange for their willingness to provide the guaranties. In addition, Company agreed to an amendment fee to Third Eye Capital in the amount of $0.3 million which will be paid from the proceeds of the advance. As a result of Company’s ability to extend the maturity of the notes under Amendment No.8, the note balances have been classified as long term debt in the accompanying September 30, 2014 balance sheet. See Note 14 - Subsequent Events.

Terms of Third Eye Capital Notes

Details about each portion of the Third Eye Capital financing facility are as follows:

A. Term Notes.  As of September 30, 2014, AAFK had $7.4 million in principal and interest outstanding, net of unamortized fair value discounts of $0.2 million.  The Term Notes mature on July 1, 2015*.  Interest on the Term Notes accrues at 14% per annum.  The Term Notes contain various covenants, including but not limited to, minimum free cash flow and production requirements and restrictions on capital expenditures.  On July 26, 2013 and October 28, 2013, the Company received waivers for certain covenants by Amendment No. 5 and Amendment No. 6 to the Note Purchase Agreement, respectively.  Additionally, Amendment No. 5 waived the requirement for minimum monthly base payments, interest payments and mandatory tiered redemption payments in favor of a daily cash flow sweep equal to 20% of cash deposits from operating activities.

B. Revolving Credit Facility.  On July 6, 2012 AAFK entered into a Revolving Credit Facility with a commitment of $18.0 million.  Through various amendments to the Note Purchase Agreement, the amount of the Revolving Loan Facility was increased to approximately $39.0 million.  Interest on the Revolving Credit Facility accrues at the prime rate plus 13.75% (17% as of September 30, 2014) payable monthly in arrears.  The Revolving Credit Facility matures on July 1, 2015*.  As of September 30, 2014, AAFK had $19.1 million in principal and interest outstanding, net of unamortized debt issuance costs of $0.6 million, on the Revolving Credit Facility.

C. Revenue Participation Term Notes.  The Revenue Participation Note bears interest at 5% per annum and matures on July 1, 2015*.  As of September 30, 2014, AAFK had $10.2 million in principal and interest outstanding, net of unamortized discounts of $0.2 million, on the Revenue Participation Note.

D. Acquisition Term Notes.  The Acquisition Term Notes accrue interest at prime rate plus 10.75% (14% per annum as of September 30, 2014) and mature on July 1, 2015*.  As of September 30, 2014, Aemetis Facility Keyes had $17.7 million in principal and interest outstanding, net of unamortized discounts of $0.4 million, on the Term Notes.

* The note can be extended by the Company to January 2016 during the month of May 2015. In doing so, the Company is required to pay a fee of 3% of the carrying value of the debt.

The Third Eye Capital Notes are secured by first-lien deeds of trust on all real and personal property, and assignment of proceeds from all government grants and guarantees from Aemetis, Inc.  The Notes all contain cross-collateral and cross-default provisions.  McAfee Capital, LLC (“McAfee Capital”), owned by Eric McAfee, the Company’s Chairman and CEO, provided a guaranty of payment and performance up to the amount of $8 million plus interest, secured by 2.4 million shares of common stock of Aemetis that it owns. McAfee Capital owns 3.4 million shares of common stock of Aemetis.  In addition, Mr. McAfee himself also provided a lien on substantially all of his personal assets, and a guaranty of payment and performance up to the amount of $15.0 million plus interest.

Cilion shareholder seller note payable.  The Company’s merger with Cilion on July 6, 2012 provided $5.0 million in notes payable to Cilion shareholders as merger compensation subordinated to the senior secured Third Eye Capital Notes.  The liability bears interest at 3% per annum and is due and payable after the Third Eye Capital Notes have been paid in full.  As of September 30, 2014, Aemetis Facility Keyes, Inc. had $5.3 million in principal and interest outstanding  under the Cilion shareholder seller note payable.

15

AEMETIS, INC.

NOTES TO CONSOLIDATED CONDENSED FINANCIAL STATEMENTS

(Unaudited, tabular data in thousands except par value and per share data)

State Bank of India secured term loan.  On July 17, 2008, Universal Biofuels Private Limited (“UBPL”), the Company’s India operating subsidiary, entered into a nine year secured term loan with the State Bank of India in the amount of approximately $6.0 million.  The term loan matured in March 2014 and is secured by UBPL’s assets, consisting of the  biodiesel plant and land in Kakinada.

In July 2008, the Company drew approximately $4.6 million against the secured term loan.  The loan principal amount is repayable in 20 quarterly installments of approximately $0.3 million, using exchange rates corresponding to the date of payment, with the first installment due in June 2009 and the last installment payment due in March 2014.  As of September 30, 2014, the 12% interest rate under this facility is subject to adjustment every two years, based on 0.25% above the Reserve Bank of India advance rate.  The principal payments scheduled for June 2009 through September 2014 were not made.  The term loan provides for liquidating damages at a rate of 2% per annum for the period of default.

On March 10, 2011, one of our subsidiaries, UBPL received a demand notice from the State Bank of India with respect to the Agreement of Loan for Overall Limit dated as of June 26, 2008. The notice informs UBPL that an event of default has occurred for failure to make an installment payment on the loan since June 2009 and demands repayment of the entire outstanding indebtedness of 19.60 crore rupees (approximately $3.2 million) together with all accrued interest thereon and any applicable fees and expenses.  As of September 30, 2014, UBPL was in default on interest and principal repayments, and all covenants, including asset coverage and debt service coverage ratios.  Additional provisions of default include the bank having the unqualified right to disclose or publish the Company’s name and its director’s names as defaulter in any medium or media.  At the bank’s option, it may also demand payment of the balance of the loan, since the principal payments have been in default since June 2009.  As a result, the Company has classified the entire loan amount as current.  The State Bank of India has filed a legal case before the Debt Recovery Tribunal (“DRT”), Hyderabad, for recovery of approximately $5.0 million against the Company and also impleaded Andhra Pradesh Industrial Infrastructure Corporation (“APIIC”) to expedite the process of registration of the factory land for which counter reply is yet to be filed by APIIC.  UBPL asserts that the State Bank of India did not provide the committed funding of the working capital loan and only funded a portion of the term loan, thus requiring the Company to enter into a working capital facility at unfavorable terms which served to hinder the business from developing at the planned rate. The State Bank of India has additionally required the personal guarantee of a former Executive Officer and the registration of the land underlying the factory as conditions prior to restructure of the loan. Payments have recently been made against the facility; however, the State Bank of India has rejected these payments as a good faith effort. In January 2014, the Company made payment of $162 thousand (1 crore rupees) against principal on the facility which was accepted by the State Bank of India. UBPL filed for a stay against further collection efforts pending the development of sufficient business in a domestic or international market that would allow UBPL to make meaningful repayments against the facility.  In May 2014, UBPL obtained an interim stay subject to payments of 1 crore rupees (approximately $0.2 million) each by May 15, 2014 and June 15, 2014. UBPL made these payments promptly.  In the event that the Company is unable to prevail with the aforementioned legal case, DRT may pass a decree for recovery of the amount due, which could include seizing Company property for recovery of amounts due. As of September 30, 2014 and December 31, 2013, the State Bank of India loan had $2.7 million and $3.2 million, respectively, in principal outstanding and accrued interest plus default interest of $3.3 million and $2.7 million respectively.

Subordinated Notes.  On January 6 and January 9, 2012, AAFK entered into Note and Warrant Purchase Agreements with two accredited investors pursuant to which it issued $3.0 million in 5% annual interest rate notes to the investors (the “Sub Notes”).  An additional $0.6 million and $0.8 million in Sub Notes were issued to one of the existing accredited investor’s Sub Notes balance in May and December 2012, respectively.  This same accredited investor received payments of $0.6 million in principal and $3 thousand in interest in July 2012. The Sub Notes included 2-year warrants exercisable for 170 thousand shares of Aemetis common stock at a price of $0.01 per share, subject to adjustment.  Interest is due at maturity.  Neither AAFK nor Aemetis may make any principal payments under the Sub Notes until all loans made by Third Eye Capital to AAFK are paid in full, except for a few exceptions where Sub Note investors will receive funds from EB-5 investments or sale of equipment.

16

AEMETIS, INC.

NOTES TO CONSOLIDATED CONDENSED FINANCIAL STATEMENTS

(Unaudited, tabular data in thousands except par value and per share data)

The Company agreed to an Amendment No.1 to the Sub Notes to extend the maturity of the January 2012 Sub Notes to July 1, 2014 and refinanced the additional December 2012 Sub Note as two Sub Notes dated December 2012 and January 19, 2013, with principal amounts of $0.5 million and $0.1 million, respectively. Both the December 2012 Sub Note and the January 19, 2013 Sub Note had a maturity date of April 30, 2013. On January 24, 2013, an additional $0.3 million Sub Note was issued with a maturity date of April 30, 2013. On May 23, 2013, all Sub Notes above with a maturity date of April 30, 2013 were refinanced as a $1.0 million Sub Note (“May 2013 Note”) with a maturity date of December 31, 2013.

On January 1, 2014, the May 2013 Sub Note was amended to extend the maturity date until the earlier of (i) June 30, 2014; (ii) completion of an equity financing by AAFK or Aemetis in an amount of not less than $25.0 million; (iii) the completion of an Initial Public Offering by AAFK or Aemetis; or (iv) after the occurrence of an Event of Default, including failure to pay interest or principal when due and breaches of note covenants. A 10 percent cash extension fee was paid by adding the fee to the balance of the new Note and 30 thousand in common stock warrants were granted with a term of two years and an exercise price of $0.01 per share.  These January 1, 2014 amendments and the refinancing terms of the Note were evaluated and it was determined, in accordance with ASC 470-50 Debt – Modification and Extinguishment, that the loan was extinguished and as a result a loss on debt extinguishment of approximately $0.1 million was recorded in January 2014.

In March 2014, the Company received $0.5 million from EB-5 investments and repaid one of the accredited investors holding a sub note of January 2012 $0.5 million.

On July 1, 2014, the January 2014 Sub Note and two January 2013 Sub Notes with two accredited investors were amended to extend the maturity date until the earlier of (i) December 31, 2014; (ii) completion of an equity financing by AAFK or Aemetis in an amount of not less than $25.0 million; (iii) the completion of an Initial Public Offering by AAFK or Aemetis; or (iv) after the occurrence of an Event of Default, including failure to pay interest or principal when due and breaches of note covenants. A 10 percent cash extension fee was paid by adding the fee to the balance of the new Note and 118,107 in common stock warrants were granted with a term of two years and an exercise price of $0.01 per share. We evaluated these July 1, 2014 amendments and the refinancing terms of the Notes and determined in accordance with ASC 470-50 Debt – Modification and Extinguishment that the loans were extinguished and as a result a loss on debt extinguishment of approximately $1.2 million was recorded in July 2014.

On January 14, 2013, Laird Cagan, a related party, loaned $0.1 million through a promissory note maturing on April 30, 2013 with a five percent annualized interest rate and the right to exercise 5 thousand warrants exercisable at $0.01 per share.

At September 30, 2014 and December 31, 2013, the Company owed, in aggregate, subordinated notes in the amount of $5.3 million for each period in principal and interest outstanding, net of unamortized issuance and fair value discounts of $0.2 million and $0.3 million, respectively.

EB-5 long-term promissory notes.  EB-5 is a US government program authorized by the Immigration and Nationality Act designed to foster employment-based visa preference for immigrant investors to encourage the flow of capital into the U.S. economy and to promote employment of U.S. workers. On March 4, 2011, and amended on January 19, 2012, and on July 24, 2012, the Company entered into a Note Purchase Agreement with Advanced BioEnergy, LP, a California limited Partnership authorized as a Regional Center to receive EB-5 investments, for the issuance of up to 72 subordinated convertible promissory notes bearing interest at 3%, each note in the principal amount of $0.5 million is due and payable four years from the date of the note for a total aggregate principal amount of up to $36.0 million. The notes are convertible after three years at a conversion price of $30.00 per share.

Advanced BioEnergy, LP arranges investments with foreign investors, who each make investments in the Keyes plant project in investment increments of $0.5 million.  The Company sold notes in the amount of $1.0 million to the first two investors during the fourth quarter of 2012 and sold a $0.5 million note to an investor during the first quarter of 2014. As of September 30, 2014, $38 thousand in accrued interest remained outstanding on the notes.  The availability of the remaining $35.0 million will be determined by the ability of Advanced BioEnergy, LP to attract additional qualified investors.

17

AEMETIS, INC.

NOTES TO CONSOLIDATED CONDENSED FINANCIAL STATEMENTS

(Unaudited, tabular data in thousands except par value and per share data)

Unsecured working capital loans.  In November 2008, the Company entered into an operating agreement with Secunderabad Oils Limited (“Secunderabad”).  Under this agreement Secunderabad agreed to provide the Company with working capital, on an as needed basis, to fund the purchase of feedstock and other raw materials for its Kakinada  biodiesel facility.  Working capital advances bear interest at the actual bank borrowing rate of Secunderabad of fifteen percent (15%).  In return, the Company agreed to pay Secunderabad an amount equal to 30% of the plant’s monthly net operating profit.  In the event that the Company’s  biodiesel facility operates at a loss, Secunderabad owes the Company 30% of the losses.  The agreement can be terminated by either party at any time without penalty.

During the three and nine months ended September 30, 2014, the Company made principal payments to Secunderabad of approximately $1.8 million and $4.2 million, respectively, under the agreement and interest payments of approximately $48 thousand and $127 thousand respectively, for working capital funding.  During the three and nine months ended September 30, 2013, the Company made principal payments to Secunderabad of approximately $0.7 million and $3.4 million, respectively, under the agreement and interest payments of approximately $16 thousand and $175 thousand, respectively, for working capital funding.  At September 30, 2014 and December 31, 2013 the Company had approximately $5.2 million and $1.9 million outstanding under this agreement, respectively.

Short-term notes.  Aemetis Technologies, formerly Zymetis, Inc., carries certain debt obligations associated with a series of grants issued by the Maryland Department of Business and Economic Development to Zymetis prior to the merger.  These grants were converted to promissory notes with interest upon the achievement of certain objectives. In the first quarter of 2014, the Company entered into a payment settlement agreement to pay off the principal and interest of approximately $0.4 million in monthly installments. As part of this agreement, the long term debt of $0.4 million has been classified into other long term liabilities. At September 30, 2014, the Company had approximately $292 thousand and $88 thousand in the other long term liabilities and other current liabilities, respectively. The remaining promissory note with principal and interest of approximately $47 thousand was converted in May 2014 at $2.50 per share into common stock of the Company.

Scheduled debt repayments for loan obligations follow:

Twelve months ended September 30,	Debt Repayments
2015	$	16,617
2016*		58,335
2017		3,624
2018		-
2019		500
Total debt		79,076
Discounts		(1,453)
Total debt, net of discounts	$	77,623

*Due to the Company’s ability to extend the maturity of the Third Eye Capital notes by six months from the scheduled maturity of July 2015, the amounts are reflected above as a 2016 maturity.

18

AEMETIS, INC.

NOTES TO CONSOLIDATED CONDENSED FINANCIAL STATEMENTS

(Unaudited, tabular data in thousands except par value and per share data)

6.           Commitments and Contingencies

Operating Leases

The Company, through its subsidiaries, has non-cancelable operating leases for office space in Cupertino and India. Future minimum operating lease payments as of September 30, 2014 are as follows:

Twelve months ended September 30,		Future Rent Paymennts
2015	$	169

For the three months ended September 30, 2014 and 2013, the Company recognized lease and rent expense of $108 thousand and $105 thousand respectively, under existing operating leases. For the nine months ended September 30, 2014 and 2013, the Company recognized lease and rent expense of $320 thousand and $316 thousand respectively, under existing operating leases.

Legal Proceedings

On March 10, 2011, one of our subsidiaries, Universal Biofuels Pvt. Ltd. (“UBPL”), received a demand notice from the State Bank of India under the Agreement of Loan for Overall Limit dated as of June 26, 2008. The notice informs UBPL that an event of default has occurred for failure to make an installment payment on the loan commencing June 2009 and demands repayment of the entire outstanding indebtedness of 19.60 crore rupees (approximately $3.2 million) together with all accrued interest thereon and any applicable fees and expenses.  Upon the occurrence and during the continuance of an Event of Default, interest accrues at the default interest rate of 2% above the State Bank of India Advance Rate. The default period began on July 1, 2009 when the principal payment was deemed past due; and we have accrued interest at the default rate since the beginning of the default period.  In addition, since the bank demanded payment of the balance, we have classified the entire loan amount as current. The State Bank of India has filed a legal case before the Debt Recovery Tribunal (“DRT”), Hyderabad, for recovery of approximately $5.0 million against the Company and also impleaded Andhra Pradesh Industrial Infrastructure Corporation (“APIIC”) to expedite the process of registration of the factory land for which counter reply is yet to be filed by APIIC. UBPL asserts that the State Bank of India did not provide the committed funding of the working capital loan and only funded a portion of the term loan, thus requiring the Company to enter into a working capital facility at unfavorable terms which served to hinder the business from developing at the planned rate. The State Bank of India has additionally required the personal guarantee of our Executive Officer and the registration of the land underlying the factory as conditions prior to restructure of the loan. Payments have recently been made against the facility; however, the State Bank of India has rejected these payments as a good faith effort. In January 2014, the Company made payment of $162 thousand (1 crore rupees) against principal on the facility which was accepted by the State Bank of India. UBPL filed for a stay against further collection efforts pending the development of sufficient business in a domestic or international market that would allow UBPL to make meaningful repayments against the facility.  In May 2014, the Company obtained an interim stay subject to payments of 1 crore rupees (approximately $0.2 million) each by May 15, 2014 and June 15, 2014. In the event that the Company is unable to prevail in the aforementioned legal case, DRT may pass a decree for recovery of the amount due, which could include seizing company property for recovery of amounts due.

On August 4, 2013, GS Cleantech Corporation, a subsidiary of Greenshift Corporation (“Greenshift”), filed a complaint in the United States District for the Eastern District of California – Fresno Division against the Company and its subsidiary, AAFK. The case was transferred to the Southern District of Indiana and joined as tag-along defendants to a pending Multidistrict Litigation with over a dozen original defendants. The complaint alleges infringement of patent rights assigned to Greenshift that pertain to certain corn oil extraction processes that the Company employs and seeks royalties, damages, treble damages, and attorney’s fees, along with injunctions precluding the Company from infringing its patent rights. The corn oil extraction process we use is licensed to us by Valicor Separation Technologies LLC, formerly called Solution Recovery Services LLC (“SRS”). The process provider has no obligations to indemnify us. On September 12, 2013, the Company, along with its subsidiary, filed its answer and counterclaims. In response to a motion for summary judgment filed by the original defendants, on October 23, 2014, the Court ruled that all the claims of all the patents at issue in the case are invalid. We expect Greenshift will appeal; however, the likelihood of Greenshift succeeding on appeal is small since the Court’s findings included summary judgments on several grounds for each allegedly infringed patent. Damages being sought in this litigation are based on a reasonable royalty to or lost profits of Greenshift. Because of its recent summary judgment findings, it is highly unlikely the court would find the case exceptional and eligible for an award to Greenshift of attorney’s fees. If Greenshift successfully appeals the District Court’s findings of invalidity, damages may be $1 million or more. The Company believes the claims to be without merit and is vigorously defending itself. If we are not successful in our defense, we would be liable for damages and at least our own attorneys’ fees. The Company’s counterclaims include patent invalidity due to obviousness (and the Court has summarily ruled in favor of the original defendants’ identical counterclaim), non- infringement, and inequitable conduct.  We are not currently able to predict the outcome of this litigation against the Company with any degree of certainty.

On August 21, 2012, UBS Securities LLC (“UBS”) filed a complaint in the United States District Court for the Southern District of New York against the Company for damages based on a breach of contract theory in connection with the Cilion acquisition transaction (“UBS Federal Action”). UBS filed a motion for, and the District Court approved, a judgment against the Company in the liquidated amount of $2.3 million which has been accrued by the Company. UBS filed post-judgment discovery requests and pursued the enforcement of the judgment. Subsequently, on March 13, 2014, UBS also filed a complaint against one of our subsidiaries, Aemetis Advanced Fuels Keyes, Inc. in the state court in the State of New York, alleging breach of the same contract involved in the UBS Federal Action. The Company and AAFK entered into a settlement agreement with UBS in September 2014 whereby the Company paid $1.0 million in September 2014 and will make monthly payments of $0.1 million to UBS until the liquidated amount is fully paid.

7.         Outstanding Warrants

During the three months ended September 30, 2014, the Company issued 118 thousand common stock warrants. During the nine months ended September 30, 2014, the Company issued 148 thousand common stock warrants, which have the potential to enhance returns for accredited investors who entered into additional Notes and Warrant Purchase Agreements.

For the three and nine months ended September 30, 2014, Note investors and employees exercised 131 thousand and 215 thousand warrant shares at the weighted average exercise price of $0.09 and $1.31 per share respectively.

A summary of warrant activity as of September 30, 2014 follows:

	Warrants Outstanding & Exercisable			Weighted - Average Exercise Price	Average Remaining Term in Years
Outstanding December 31, 2013	470		$	3.40	4.85
Expired	-			-
Granted	30			0.01
Exercised	(30	)		0.01
Outstanding March 31, 2014	470		$	3.41	4.60
Expired	(47	)		4.98
Granted	-			-
Exercised	(54	)		4.96
Outstanding June 30, 2014	369		$	2.99	3.12
Expired	(1	)		4.66
Granted	118			0.01
Exercised	(131	)		0.09
Outstanding September 30, 2014	355		$	3.06	2.93

19

AEMETIS, INC.

NOTES TO CONSOLIDATED CONDENSED FINANCIAL STATEMENTS

(Unaudited, tabular data in thousands except par value and per share data)

8.      Fair Value of Warrants

The following tables summarize the assumptions used in computing the fair value of liability warrants subject to fair value accounting at the date of issue during the three months ended September 30, 2014:

Expected dividend yield		0	%
Risk-free interest rate		1.07	%
Expected volatility		81.02% - 92.51	%
Expected Life (years)		2.7 - 3.3
Exercise price	$	0.01
Company stock price	$	8.68

9.      Fair Value Measurements

The Company complies with the fair value measurements and disclosures standard which defines fair value, establishes a framework for measuring fair value, and expands disclosure for those assets and liabilities carried on the balance sheet on a fair value basis.

The Company's balance sheet contains derivative financial instruments that are recorded at fair value on a recurring basis. Fair value measurements and disclosures require that assets and liabilities carried at fair value be classified and disclosed according to the process for determining fair value. There are three levels of determining fair value.

Level 1 uses quoted market prices in active markets for identical assets or liabilities.

Level 2 uses observable market based inputs or unobservable inputs that are corroborated by market data.

Level 3 uses unobservable inputs that are not corroborated by market data.

A description of the valuation methodologies used for instruments measured at fair value, as well as the general classification of such instruments pursuant to the valuation hierarchy, is set forth below.

Warrant liability: The warrant liability consists of stock warrants issued by the Company that contain conditional obligation to repurchase feature. In accordance with accounting for warrants as liabilities, the Company calculated the fair value of warrants under Level 3 using the assumptions described in “Fair Value of Warrants”. Realized and unrealized gains and losses related to the change in fair value of the warrant liability are included in other income on the Statement of Operations.

The following table summarizes financial liabilities measured at fair value on a recurring basis as of September 30, 2014, segregated by the level of the valuation inputs within the fair value hierarchy utilized to measure fair value:

	Total		Level 1		Level 2		Level 3
Warrant liability	$	162	$	-	$	-	$	162

The following table reflects the activity for liabilities measured at fair value using Level 3 inputs as of September 30, 2014:

20

AEMETIS, INC.

NOTES TO CONSOLIDATED CONDENSED FINANCIAL STATEMENTS

(Unaudited, tabular data in thousands except par value and per share data)

Balance as of December 31, 2013	$	60
Issuances of warrant liabilities		-
Exercise of warrant liabilities		-
Related change in fair value		48
Balance as of March 31, 2014	$	108
Issuances of warrant liabilities		-
Exercise of warrant liabilities		-
Related change in fair value		71
Balance as of June 30, 2014	$	179
Issuances of warrant liabilities		-
Exercise of warrant liabilities		-
Related change in fair value		(17	)
Balance as of September 30, 2014	$	162

10.      Stock-Based Compensation

Common Stock Reserved for Issuance

Aemetis authorized the issuance of 1.2 million shares of common stock under its the Zymetis 2006 Stock Plan and Amended and Restated 2007 Stock Plan (together, the “Company Stock Plans”), which includes both incentive and non-statutory stock options. These options generally expire five years from the date of grant and are exercisable at any time after the date of the grant, subject to vesting.

The following is a summary of options granted under the employee stock plans:

Nine months ended	Shares Available for Grant			Number of Shares Outstanding			Weighted-Average Exercise Price
Balance as of December 31, 2013		74			913		$	4.90
Authorized		100			—			—
Granted		(148	)		148			4.20
Exercised		—			(155	)		1.66
Forfeited/expired		70			(70	)		2.82
Balance as of September 30, 2014		97			835		$	5.61

For the three months ended September 30, 2014 and 2013 the Company recorded option expenses in the amount of $157 thousand and $144 thousand for each period. Included in the three months ended September 30, 2014 and 2013 option expenses were $6 thousand and $1 thousand, respectively, of outstanding consultant options subject to periodic fair value re-measurement under ASC 505-50-30 Equity Based Payments to Non Employees.

For the nine months ended September 30, 2014 and 2013 the Company recorded option expenses in the amount of $447 thousand and $388 thousand for each period. Included in the nine months ended September 30, 2014 and 2013 option expenses were $17 thousand and $10 thousand, respectively, of outstanding consultant options subject to periodic fair value re-measurement under ASC 505-50-30 Equity Based Payments to Non Employees.

The valuation using the Black-Scholes valuation pricing model is based upon the current market value of the Company’s common stock and other current assumptions, including the expected term (contractual term for consultant options). The Company records the expense related to consultant options using the accelerated expense pattern prescribed in ASC 505-50-30.

21

AEMETIS, INC.

NOTES TO CONSOLIDATED CONDENSED FINANCIAL STATEMENTS

(Unaudited, tabular data in thousands except par value and per share data)

Valuation and Expense Information. The weighted-average fair value calculations for consultant and employee options are based on the following weighted average assumptions:

		As of September 30
		2014			2013
Dividend-yield		0	%		0	%
Risk-free interest rate		0. 02 - 0.83	%		0.18 - 0.42	%
Expected volatility		56.35 - 91.33	%		74.83 - 142.90	%
Expected life (years)		0.3 - 3.0			0.5 - 3.0
Market value of common stock	$	8.68		$	3.20

As of September 30, 2014, the Company had $849 thousand and $16 thousand of total unrecognized compensation expense for employees and non-employees that the Company will amortize over the 3.8 weighted remaining term of the option agreements.

Non-Plan Stock Options

In November 2013 the Company issued 98 thousand stock options to board members and consultants outside of the Company Stock Option Plans. As of September 30, 2014, 82 thousand options vested and 7 thousand unvested at remaining contractual term of 3.1 years. 9 thousand options were exercised at a weighted average exercise price of $5.50 and 89 thousand options were outstanding as of September 30,2014.

11.         Agreements

Working Capital Arrangement. In May 2013 we extended the annual Grain Procurement and Working Capital Agreement with J.D. Heiskell that has been in place since March 2011.  Pursuant to the agreement we agreed to procure whole yellow corn and grain sorghum (also called “milo”) from J.D. Heiskell. The Company has the ability to obtain grain from other sources subject to certain conditions, however, in the past all of our grain purchases have been from Heiskell. Title and risk of loss of the corn pass to the Company when the corn is deposited into the weigh bin. The term of the Agreement expires on December 31, 2014 and is automatically renewed for additional one-year terms. Heiskell further agrees to sell all ethanol to Kinergy Marketing or other marketing purchaser designated by the Company and all WDG and condensed distillers solubles  to A.L. Gilbert. Our relationships with J.D. Heiskell, Kinergy Marketing, and A.L. Gilbert are well established and the Company believes that the relationships are beneficial to all parties involved in utilizing the distribution logistics, reaching out to widespread customer base, managing inventory, and building working capital relationships. Revenue is recognized upon delivery of ethanol to J. D. Heiskell as revenue recognition criteria has been met and any performance required of the Company subsequent to the sale to J.D. Heiskell is inconsequential. These agreements are ordinary purchase and sale agency agreements for an ethanol plant.

The J.D. Heiskell sales activity associated with the Purchasing Agreement, Grain Procurement and Working Capital

Agreements during the three and nine months ended September 30, 2014 were as follows:

22

AEMETIS, INC.

NOTES TO CONSOLIDATED CONDENSED FINANCIAL STATEMENTS

(Unaudited, tabular data in thousands except par value and per share data)

		Three months ended September 30,				Nine months ended September 30,
		2014		2013		2014		2013
Ethanol sales	$	33,641	$	36,936	$	121,388	$	69,676
Wet distiller's grains sales		8,175		8,621		30,970		16,605
Corn oil sales		1,018		925		3,263		1,555
Corn purchases		27,616		31,381		94,563		62,970
Milo Purchases		-		6,777		-		11,425
Accounts receivable		-		928		-		928
Accounts payable		1,904		2,189		1,904		2,189

Ethanol and Wet Distillers Grains Marketing Arrangement. The Company entered into an Ethanol Marketing Agreement with Kinergy Marketing and a Wet Distillers Grains marketing agreement with A. L Gilbert. Under the terms of the agreements, subject to certain conditions, the agreements mature on August 31, 2015 with automatic one-year renewals thereafter.  For the three months ended September 30, 2014 and 2013, the Company expensed marketing costs of $0.7 million for each period, respectively, under the terms of both ethanol and wet distiller’s grains agreements. For the nine months ended September 30, 2014 and 2013, the Company expensed marketing costs of $2.3 million and $1.3 million, respectively.

12.         Segment Information

Aemetis recognizes two reportable geographic segments: “North America” and “India .” The “North America” operating segment includes the Company’s owned ethanol plant in Keyes, California and its technology lab in College Park, Maryland. As the Company’s technology becomes commercialized, this business segment will include its domestic commercial application of second generation ethanol technology, its plant construction projects and any acquisitions of ethanol or ethanol related technology facilities in North America.

The “India” operating segment includes the Company’s 50 million gallon per year nameplate capacity  biodiesel manufacturing plant in Kakinada, the administrative offices in Hyderabad, India, and the holding companies in Nevada and Mauritius. The Company’s  biodiesel is marketed and sold primarily to customers in India through brokers and by the Company directly.

Summarized financial information by reportable segment for the three and nine months ended September 30, 2014 and 2013 follows:

23

AEMETIS, INC.

NOTES TO CONSOLIDATED CONDENSED FINANCIAL STATEMENTS

(Unaudited, tabular data in thousands except par value and per share data)

	For the three months ended September 30,				For the nine months ended September 30,
	2014		2013		2014		2013
Revenues
North America	$	42,886	$	49,172	$	155,966	$	92,883
India		5,462		7,516		10,242		30,578
Total revenues	$	48,348	$	56,688	$	166,208	$	123,461
Cost of goods sold
North America	$	35,632	$	46,709	$	121,754	$	89,851
India		5,001		6,943		9,762		26,576
Total cost of goods sold	$	40,633	$	53,652	$	131,516	$	116,427
Gross profit/(loss)
North America	$	7,254	$	2,463	$	34,212	$	3,032
India		461		573		480		4,002
Total gross profit	$	7,715	$	3,036	$	34,692	$	7,034

India. During the three  months ended September 30, 2014, four customers accounted for approximately 86% of the consolidated India segment revenues.  During the three months ended September 30, 2013, five customers accounted for approximately 70% of the consolidated India segment revenues.

North America: During the three months ended September 30, 2014, the Company’s revenues from ethanol, WDG, and corn oil were made pursuant to the Grain Procurement and Working Capital Agreement established between the Company and J.D. Heiskell.  Sales of ethanol and WDG to J.D. Heiskell accounted for 97% of the Company’s North America segment revenues for the three months ended September 30, 2014.

During the three months ended September 30, 2013, Company’s revenues from ethanol, WDG, and corn oil were made pursuant to the Grain Procurement and Working Capital Agreement established between the Company and J.D. Heiskell.  Sales of ethanol and WDG to J.D. Heiskell accounted for 98% of the Company’s North America segment revenues for the three months ended September 30, 2013.

Total assets consist of the following:

	As of		As of
	September 30,		December 31,
	2014		2013
North America	$	76,981	$	83,183
India		18,124		13,959
Total Assets	$	95,105	$	97,142

13.         Related Party Transactions

The Company owes Eric McAfee and McAfee Capital, owned by Eric McAfee, $0.4 million and $1.0 million respectively, for salary and expense reimbursements, which are included in accrued expenses and accounts payable on the balance sheet as of September 30, 2014 and December 31, 2013.  For the three months ended September 30, 2014 and 2013, the Company expensed $23 thousand and $40 thousand  respectively, to reimburse actual expenses incurred by McAfee Capital and related entities.  For the nine months ended September 30, 2014 and 2013, the Company expensed $142 thousand and $110 thousand, respectively, to reimburse actual expenses incurred by McAfee Capital and related entities.

24

AEMETIS, INC.

NOTES TO CONSOLIDATED CONDENSED FINANCIAL STATEMENTS

(Unaudited, tabular data in thousands except par value and per share data)

14.         Subsequent Events

Construction of Carbon Dioxide Liquification Plant

On October 15, 2014, Aemetis Advanced Products Keyes, Inc., a wholly-owned subsidiary of Aemetis, Inc., entered into an agreement with Denmark-based Union Engineering to design and construct a 300 ton per day (about 220 million pound per year) Liquid CO2 facility.  The facility will liquify carbon dioxide at the Aemetis ethanol biorefinery in Keyes, California at an expected construction cost of about $15 million.  The Liquid CO2 facility will allow us to convert a by-product of the ethanol process into quality liquid carbon dioxide for customers in the food processing, beverage, dry ice and construction sectors.

Third Eye Capital Amendment

On November 7, 2014, Third Eye Capital agreed to Amendment No. 8 to the Note Purchase Agreement to extend a line of credit in the amount of $6.0 million available for advance to Aemetis, such advance to be added to the outstanding principal balance of the existing notes under the Note Purchase Agreement. In addition, Third Eye Capital agreed to give Aemetis the right to extend the maturity date of the notes to January 1,2016 upon notice and payment of a 3% extension fee.  Pursuant to the terms of Amendment No.8, Aemetis agreed to a covenant to complete an equity offering of its preferred stock for net proceeds of not less than $20 million with all of such net proceeds to be used to repay the principal outstanding under the Note Purchase Agreement in accordance with the priorities set forth there in.

As consideration for Amendment No.8, the unconditional personal Guaranty from Chairman of the Company, the guaranties from Company parties and McAfee Capital, LLC owned by Mr. Eric McAfee were all reaffirmed. The Company also agreed to pay $0.2 million in consideration to Mr. McAfee and McAfee Capital in exchange for their willingness to provide the guaranties. In addition, Company agreed to an amendment fee to Third Eye Capital in the amount of $0.3 million which will be paid from the proceeds of the advance.

The foregoing description of Amendment No. 8 is only a summary and does not purport to be complete and is qualified in its entirety by reference to the full text of Amendment No. 8, which is filed as Exhibit 10.1 hereto, and is incorporated, by reference herein.

15.         Management’s Plan

The accompanying financial statements have been prepared contemplating the realization of assets and satisfaction of liabilities in the normal course of business. During 2014, the Company has been reliant on their senior secured lender to provide additional funding and has been required to remit substantially all excess cash from operations to the senior secured lenders. Management’s plans for the Company include:

● Operating the Keyes plant in the current positive margin environment;

● Continuing to incorporate lower-cost, non-food advanced biofuels feedstock at the Keyes plant;

● Attracting investors to financing arrangements including working with Advanced BioEnergy LP to issue up to $34.5 million of additional EB-5 notes at 3% interest rate;

● Refinancing the senior debt with a lender who is able to offer terms conducive to the long term financing of the Keyes plant;

● Restructuring or refinancing the State Bank of India note to allow for additional working capital and reduce current financing costs;

● Securing higher volumes of international shipments from the Kakinada, India  biodiesel and refined glycerin facility; and

25

AEMETIS, INC.

NOTES TO CONSOLIDATED CONDENSED FINANCIAL STATEMENTS

(Unaudited, tabular data in thousands except par value and per share data)

● Continuing to expand in the India market

Management believes that through the above mentioned actions it will be able to fund company operations and continue to operate the secured assets for the foreseeable future. There can be no assurance that the existing credit facilities and cash from operations will be sufficient nor that the Company will be successful at maintaining adequate relationships with the senior lenders or significant shareholders. Should the Company require additional financing, there can be no assurances that the additional financing will be available on terms satisfactory to the Company.

26

Item 2. Management's Discussion and Analysis of Financial Condition and Results of Operations.

Our Management’s Discussion and Analysis of Financial Condition and Results of Operations (MD&A) is provided in addition to the accompanying consolidated financial statements and notes to assist readers in understanding our results of operations, financial condition, and cash flows. MD&A is organized as follows:

● Overview. Discussion of our business and overall analysis of financial and other highlights affecting us to provide context for the remainder of MD&A.

● Results of Operations. An analysis of our financial results comparing the three and nine months ended September 30, 2014 to the three and nine months ended September 30, 2013.

● Liquidity and Capital Resources. An analysis of changes in our balance sheets and cash flows and discussion of our financial condition.

● Critical Accounting Estimates. Accounting estimates that we believe are important to understanding the assumptions and judgments incorporated in our reported financial results and forecasts.

The following discussion should be read in conjunction with the Aemetis, Inc. consolidated financial statements and accompanying notes included elsewhere in this report. The following discussion contains forward-looking statements that reflect the plans, estimates and beliefs of Aemetis, Inc. As discussed in further detail above, the actual results could differ materially from those discussed in the forward-looking statements. Factors that could cause or contribute to these differences include those discussed below and elsewhere in this Report, and in other reports we file with the SEC, specifically our most recent Annual Report on Form 10-K. All references to years relate to the calendar year ended December 31 of the particular year.

Overview

Aemetis is an advanced renewable fuels and biochemicals company focused on the acquisition, development and commercialization of innovative technologies that replace traditional petroleum-based products by the conversion of first generation ethanol and  biodiesel plants into advanced biorefineries.  We own and operate a plant in Keyes, California where we manufacture and produce ethanol, wet distillers’ grain (WDG), condensed distillers solubles (CDS) and corn oil and a manufacturing and refining facility in Kakinada, India where we manufacture and produce fatty acid methyl ester (biodiesel), crude and refined glycerin and refined palm oil.  In September 2013, we received approval by the US Environmental Protection Agency to produce ethanol using grain sorghum and biogas as well as approval for the Keyes plant to use existing combined heat and power systems to generate higher value D5 Advanced Biofuel Renewable Identification Numbers (RIN’s).  In April 2014, we received the International Sustainability and Carbon Certification for the production of  biodiesel at our India plant from either waste fats and oils or the non-edible portion of palm oil for sale into European markets.  The Company completed the EPA Process for importation of our India biodiesel into the United States. In addition, we are continuing to research and develop our microbial technology, for the production of renewable industrial biofuels and biochemicals.

Results of Operations

Three Months Ended September 30, 2014 Compared to Three Months Ended September 30, 2013

Revenues

Our revenues are derived primarily from sales of ethanol and WDG in North America and  biodiesel, glycerin and refined palm oil in India.

27

Three Months Ended September 30 (in thousands)

	2014		2013		Inc/(dec)			% change
North America	$	42,886	$	49,172	$	(6,286	)		-12.8	%
India		5,462		7,516		(2,054	)		-27.3	%
Total	$	48,348	$	56,688	$	(8,340	)		-14.7	%

North America.  For the three months ended September 30, 2014, we generated 78% of revenue from sales of ethanol, 19% from sales of WDG, and 3% from sales of corn oil and condensed distillers solubles.  During the three months ended September 30, 2014 plant production averaged 106% of nameplate capacity.  The decrease in revenues during the three months ended September 30, 2014 was due to a 14% decrease in average price of ethanol to $2.29 while the gallons of ethanol sold increased by 2% compared to the three months ended September 30, 2013. In addition, the average price of WDG decreased 14% to $85 per ton and the WDG sales volume decreased 4% to 96 thousand tons during the quarter ended September 30, 2014 compared to the quarter ended September 30, 2013.

India.  The decrease in revenues was primarily attributable to decreased refined glycerin sales, which  decreased by 52% in the quarter ended September 30, 2014 compared to the quarter ended September 30, 2013,    slightly offset by a 5% increase in average price.  We also sold $4.0 million in palm oil in the quarter ended September 30, 2013 compared to no palm oil sales in the 2014 period.  For the three months ended September 30, 2014, we generated 70% of sales from methyl ester/ biodiesel, 11% of sales from refined glycerin, and 19% of sales from processing biodiesel for other companies compared to the three months ended September 30, 2013 when we generated 21% of sales from methyl ester/ biodiesel, 17% from sales of refined glycerin, 55% from sales of palm oil and 7% from sales of processing bio diesel for other companies and capitalizing related crude glycerin. Biodiesel sales volume increased by 119%  to 3.8 thousand metric tons while the average price also increased by 9% to $992 per metric ton in the quarter ended September 30, 2014 compared to the prior quarter due to one significant international sale in the quarter ended September 30, 2014.

Cost of Goods Sold

Three Months Ended September 30 (in thousands)

	2014		2013		Inc/(dec)			% change
North America	$	35,632	$	46,709	$	(11,077	)		-23.7	%
India		5,001		6,943		(1,942	)		-28.0	%
Total	$	40,633	$	53,652	$	(13,019	)		-24.3	%

North America.  We ground 145 thousand tons of corn at an average price of $185 per ton during the three months ended September 30, 2014 compared to 140 thousand tons of corn and grain sorghum at an average price of $276 per ton during the three months ended September 30, 2013. Our cost of feedstock per ton decreased by 33% during the three months ended September 30, 2014 causing the reduction in cost of goods sold compared to the same period in 2013.

India.  The decrease in costs of goods sold was attributable to the decrease in revenues from the sales of  refined glycerin. For the three months ended September 30, 2014, we produced 3.3 thousand metric tons of  biodiesel at an average price of $830 per metric ton and 3 hundred metric tons of refined glycerin at an average price of $774 per metric ton compared to 2 thousand metric tons of  biodiesel at an average price of $1,064 per metric ton and 1.6 thousand metric tons refined glycerin at an average price of $661 per metric ton in the same period in 2013.

Gross Profit

Three Months Ended September 30 (in thousands)

	2014		2013		Inc/(dec)			% change
North America	$	7,254	$	2,463	$	4,791			194.5	%
India		461		573		(112	)		-19.5	%
Total	$	7,715	$	3,036	$	4,679			154.1	%

North America.  Gross profit increased by 194.5% in the three months ended September 30, 2014 compared to the three months ended September 30, 2013 due to corn prices falling faster than the ethanol prices. Corn prices decreased by 33% while ethanol prices decreased by 14% during the three months ended September 30, 2014 compared to the same period in the prior year.

India.  The decrease of  19.6%  in gross profit was attributable to the decrease of 27.3%  in overall revenues in the quarter ended September 30, 2014 compared to the quarter ended September 30, 2013.   We had only one international shipment of distilled biodiesel as well as domestic sales of  biodiesel and refined glycerin in the three months ended September 30, 2014 compared to one large domestic sale of  biodiesel, refined glycerin, crude and refined palm oil sales in the three months ended September 30, 2013.

28

Operating Expenses

R&D

Three Months Ended September 30 (in thousands)

	2014		2013		Inc/(dec)			% change
North America	$	101	$	115	$	(14	)		-12.2	%
India		-		-		-			-
Total	$	101	$	115	$	(14	)		-12.2	%

The decrease in R&D expenses in our North America segment for the three months ended September 30, 2014 compared to the three months ended September 30, 2013 was due to a decrease in depreciation of $16 thousand and a decrease in rent, taxes and utilities of $6 thousand offset by an increase in salaries, supplies and services of $8 thousand.

SG&A

Three Months Ended September 30 (in thousands)

	2014		2013		Inc/(dec)			% change
North America	$	2,779	$	3,184	$	(405	)		-12.7	%
India		193		695		(502	)		-72.2	%
Total	$	2,972	$	3,879	$	(907	)		-23.4	%

Selling, General and Administrative Expenses (SG&A). SG&A expenses consist primarily of salaries and related expenses for employees, marketing expenses related to sales of ethanol and WDG in North America and  biodiesel and other products in India, as well as professional fees, other corporate expenses, and related facilities expenses.

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North America.  SG&A expenses as a percentage of revenue in the third quarter of 2014 was consistent with the corresponding quarter of 2013 at 6.5%. Given that most of our SG&A expenses are fixed, typically only marketing expenses are impacted along with sales. However, the decrease in the SG&A expense in the quarter ended September 30, 2014 compared to the 2013 quarter was due to a one-time expense for our litigation with UBS of $0.4 million and stock compensation recognized for options granted as well as full expense for warrants issued of $0.6 million in the quarter ended September 30, 2013 that did not recur offset by an increase in professional fees of $96 thousand, an increase in stock issuance for consulting services of $185 thousand, and an increase of $175 thousand for salaries, supplies, and other.

India.  Our single largest expense in SG&A comes from operational support fees paid to Secunderabad Oils Limited as part of an operating profit sharing arrangement. SG&A expenses as a percentage of revenue in the third quarter of 2014 decreased to 4% as compared to 9% in the corresponding quarter in 2013. The decrease was due to a decrease in sales activity resulting in a decrease in operating support charges by $0.2 million.

Other Income and Expense

Three Months Ended September 30 (in thousands)

Other (income)/expense
		2014			2013			Inc/(dec)			% change
North America
	Interest expense	$	2,029		$	2,716		$	(687	)		-25.3	%
	Amortization expense		741			2,020			(1,279	)		-63.3	%
	Loss on debt extinguishment		1,231			2,521			(1,290	)		-51.2	%
	Other (income) expense		(75	)		(167	)		92			-55.1	%
India
	Interest expense		258			217			41			18.9	%
	Other (income) expense		(6	)		24			(30	)		-125.0	%
	Total	$	4,178		$	7,331		$	(3,153	)		-43.0	%

Other Income/Expense.  Other income (expense) consisted primarily of interest, amortization and extinguishment expense attributable to debt facilities acquired by our parent company, our subsidiaries Universal Biofuels Pvt. Ltd., International Biofuels, Inc., Aemetis Advanced Fuels Keyes, Inc., Aemetis Facilities Keyes, Aemetis Technologies and AE Advanced Fuels and interest accrued on the judgments obtained by Cordillera Fund, UBS and Kiefer. The debt facilities include stock or warrants issued as fees. The fair value of stock and warrants are amortized as amortization expense, except when the extinguishment accounting method is applied, in which case refinanced debt costs are recorded as extinguishment expense. In addition, the other income (expense) consists of scrap sales from Universal Biofuels Pvt. Ltd., and gain or loss on sale of equipment in the North America entities.

North America.  Interest expense was lower in the quarter ended September 30, 2014 due to payments of principal of $4.8 million and interest of $1.9 million on our senior debt and sub notes. The decrease in amortization expense is due to debt issuance costs present during the prior period becoming fully amortized in 2014. The debt extinguishment costs were higher in 2013 as there were multiple sub debt notes that were amended in the 2013 period causing a larger loss on extinguishment as compared to the 2014 period.

India.  Interest expense is slightly higher in the quarter ended September 30, 2014  as a result of increased utilization of our working capital line which increased by 64% to $5.2 million compared to $1.9 million as of the year ended December 31, 2013 and there were no principal and interest payments made against SBI term loan in the quarter ended September 30, 2014. The slight increase in other income was caused primarily by an increase in foreign exchange gains and other scrap sales offset by foreign exchange reinstatement losses as there was only one international shipment in the quarter ended  September 30, 2014.

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Nine Months Ended September 30, 2014 Compared to Nine Months Ended September 30, 2013

Revenues

Our revenues are derived primarily from sales of ethanol and WDG in North America and  biodiesel, glycerin and refined palm oil in India.

Nine Months Ended September 30 (in thousands)

	2014		2013		Inc/(dec)			% change
North America	$	155,966	$	92,883	$	63,083			67.9	%
India		10,242		30,578		(20,336	)		-66.5	%
Total	$	166,208	$	123,461	$	42,747			34.6	%

North America For the nine months ended September 30, 2014, we generated 78% of revenue from sales of ethanol, 20% from sales of WDG, 2% from sales of corn oil and condensed distillers solubles.  During the nine months ended September 30, 2014 Keyes plant production averaged 112% of nameplate capacity.  The increase in revenues between the nine months ended September 30, 2014 and 2013 reflects the idling of the Keyes, CA plant from January 21, 2013 through April 23, 2013 compared to a full nine months of operations during the nine months ended September 30, 2014. In addition, the ethanol sales volume rose by 73% to 45.7 million gallons while the average ethanol price of $2.65 decreased by 3% compared with the prior period, the average price of WDG was consistent with prior period at $99.8 per ton while the WDG sales volume went up by 63% to 310 thousand tons.

India.   The decrease in revenues was primarily attributable to decreased sales of  biodiesel as a result of decreased production while we completed upgrades to the plant for the distillation of biodiesel and testing of waste fats and oils for the production of distilled biodiesel for sales into international markets. For the nine months ended September 30, 2014, we generated 75% of sales from methyl ester/ biodiesel, 45% of which was sales of distilled biodiesel into international markets, 15% of sales from refined glycerin, and 10% of sales of other compared to 51% of sales from methyl ester/ biodiesel, 11% of sales from refined glycerin, 12% of sales from refined palm oil, 13% of sales from the trade of crude palm oil and 13% of sales from the sale and trade of other products during the nine months ended September 30, 2013. In addition, the biodiesel sales volume decreased by 59% to 7.6 thousand metric tons while the average price of  biodiesel  increased by 15% to $1,003 per metric ton and the sales volume of refined glycerin decreased by 119% to 1.6 thousand metric tons while the average price of glycerin increased by 9% to $997 per metric ton during the nine months ended September 30, 2014 compared to the same period in 2013.

Cost of Goods Sold

Nine Months Ended September 30 (in thousands)

	2014		2013		Inc/(dec)			% change
North America	$	121,754	$	89,851	$	31,903			35.5	%
India		9,762		26,576		(16,814	)		-63.3	%
Total	$	131,516	$	116,427	$	15,089			13.0	%

North America.   We ground 454 thousand tons of corn at an average price of $208 per ton during the nine months ended September 30, 2014 compared to 261 thousand tons of corn at an average price of $290 per ton during the nine months ended September 30, 2013. Our cost of corn per ton decreased by 28% for the nine months ended September 30, 2014 compared to same period in the 2013. The increase in cost of goods sold between the nine months ended September 30, 2014 and 2013 reflects a full nine months of operations during the nine months ended September 30, 2014 compared to the idling of the Keyes, CA plant from January 15, 2013 through April 22, 2013.

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India.   The decrease in cost of goods sold was attributable to the decrease in revenues from the sales of  biodiesel and glycerin. For the nine months ended September 30, 2014 we processed 6.6 thousand metric tons of  biodiesel at an average price of $897 per metric ton and 1.6 thousand metric tons of glycerin at an average price of $646 per metric ton compared to 18.8 thousand metric tons of  biodiesel at an average price of $737 per metric ton, 4 thousand metric tons of refined palm oil (RPO) at an average price of $876 per metric ton and 3.7 thousand metric tons of refined glycerin at an average price of $612 per metric ton during the nine months ended September 30, 2013.

Gross Profit

Nine Months Ended September 30 (in thousands)

	2014		2013		Inc/(dec)			% change
North America	$	34,212	$	3,032	$	31,180			1028.4	%
India		480		4,002		(3,522	)		-88.0	%
Total	$	34,692	$	7,034	$	27,658			393.2	%

North America.  Gross profit increased due to production and sales of ethanol for 273 days for the nine months ended September 30, 2014 compared to the production and sales of ethanol for 180 days in the nine months ended September 30, 2013. In addition, corn prices decreased by 28% in the nine months ended September 30, 2014 compared to the same period in the prior year.

India.  The decrease of 88.0% in gross profit was attributable to the decrease of 66.5% in overall revenues in addition to only one international shipment of distilled biodiesel and decreases in domestic biodiesel and refined glycerin sales in the nine months ended September 30, 2014.  By comparison we had several  international sales of  biodiesel and one large domestic sale of  biodiesel  as well as refined glycerin and crude/refined palm oil sales in the nine months ended September 30, 2013.

Operating Expenses

R&D

Nine Months Ended September 30 (in thousands)

	2014		2013		Inc/(dec)			% change
North America	$	342	$	468	$	(126	)		-27.0	%
India		-		-		-			-
Total	$	342	$	468	$	(126	)		-27.0	%

The decrease in R&D expenses in our North America segment for the nine months ended September 30, 2014 compared to the nine months ended September 30, 2013 is due to a decrease in depreciation and amortization of $155 thousand and a decrease in taxes, utilities, and other of $18 thousand offset by an increase of professional fees and lab equipment of $30 thousand and an increase in salaries of $19 thousand.

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SG&A

Nine Months Ended September 30 (in thousands)

		2014		2013		Inc/(dec)		% change
North America	$	8,468	$	9,743	$	(1,275	)	-13.1	%
India		795		2,335		(1,540	)	-66.0	%
Total	$	9,263	$	12,078	$	(2,815	)	-23.3	%

Selling, General and Administrative Expenses (SG&A). SG&A expenses consist primarily of salaries and related expenses for employees, marketing expenses related to sales of ethanol and WDG in North America and  biodiesel and other products in India, as well as professional fees, other corporate expenses, and related facilities expenses.

North America.  SG&A expenses as a percentage of revenue in the nine months ended September 30, 2014 decreased to 5.4% as compared to 10.5% in the corresponding period of 2013. Given that most of our SG&A expenses are fixed, typically only marketing expenses are impacted along with sales. The decrease in SG&A expense was primarily attributable to the  reclassification of $2.6 million in fixed costs from Cost of Goods Sold to SG&A during the period in the nine months ended September 30, 2013 that the Keyes ethanol plant was idle, and an $0.4 million decrease in interest, penalties on property taxes, utilities, and salaries and stock compensation expense in the nine months ended September 30, 2014, offset by increases in marketing expense of $0.9 million, and professional fees of $0.6 million for legal fees, reverse stock split services and all other advisory services including stock issuances for services, and  travel and entertainment  of $0.2 million for the nine months ended September 30, 2014 compared to September 30, 2013.

India.  Our single largest expense in SG&A comes from operational support fees paid to Secunderabad Oils Limited and these fees are computed as a percentage of operating profits. SG&A expenses as a percentage of revenue in the nine months ended September 30, 2014 was consistent at 8% as compared to the corresponding period of 2013.  The decrease in revenues by 67% in the nine months ended September 30, 2014 resulted in  decreases of $0.9 million in operating support charges and $0.1 million in marketing expenses during the nine months ended September 30, 2014. In addition, $0.2 million of salaries and $0.3 million of gas and electric and water costs properly reclassified from SG&A as overhead costs to cost of goods sold in the nine months ended September 30, 2014.
 

Other Income and Expense

Nine Months Ended September 30 (in thousands)

		2014			2013			Inc/(dec)			% change
North America
	Interest expense	$	6,966		$	7,749		$	(783	)		-10.1	%
	Amortization expense		5,361			10,366			(5,005	)		-48.3	%
	Loss on debt extinguishment		1,346			3,709			(2,363	)		-63.7	%
	Other (income) expense		(193	)		(341	)		148			-43.4	%
India
	Interest expense		771			767			4			0.5	%
	Other (income) expense		(43	)		(73	)		30			-41.1	%
	Total	$	14,208		$	22,177		$	(7,969	)		-35.9	%

Other Income/Expense.  Other income (expense) consisted primarily of interest, amortization and extinguishment expense attributable to debt facilities acquired by our parent company, our subsidiaries Universal Biofuels Pvt. Ltd. (UBPL), International Biofuels, Inc., Aemetis Advanced Fuels Keyes, Inc., Aemetis Facilities Keyes, Aemetis Technologies and AE Advanced Fuels and interest accrued on the judgments obtained by Cordillera Fund, UBS and Kiefer. The debt facilities include stock or warrants issued as fees. The fair value of stock and warrants are amortized as amortization expense, except when the extinguishment accounting method is applied, in which case refinanced debt costs are recorded as extinguishment expense. In addition, the other income (expense) consists of scrap sales from UBPL and gain or loss on sale of equipment in the North America entities.

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North America.  Interest expense was slightly lower in the nine months ended September 30, 2014 due to $23.1 million in principal and $6.6 million in interest payments on our senior notes and sub debt. The decrease in amortization expense is due to debt issuance costs present during the prior period becoming fully amortized in the last two quarters of 2013 and the first nine months of 2014. The debt extinguishment costs were higher in 2013 as there were multiple sub debt notes that were amended in the 2013 period causing a larger loss on extinguishment, while only two sub debt notes were refinanced during the nine months ended September 30, 2014. The decrease in other income was due to gain on sales of assets during the nine months ended September 30, 2013 compared to a loss on sale of assets offset by gain on write off of liabilities in the nine months ended September 30, 2014.

India.  Interest expense decreased slightly as a result of principal and interest payments of $4.7 million and $123 thousand for SBI term loan and working capital loan respectively during the nine months ended September 30, 2014. The decrease in other income was caused primarily by a decrease in foreign exchange gains as there were multiple international shipments in the quarter ended September 30, 2013, but only one international shipment in the quarter ended September 30, 2014.

Liquidity and Capital Resources

Cash and Cash Equivalents

Cash and cash equivalents were $5.5 million at September 30, 2014, of which $4.0 million was held in our Indian subsidiary and $1.5 million was held in our North American entities. Our current ratio at September 30, 2014 was 0.38 compared to a current ratio of 0.35 at December 31, 2013.  We expect that our future available capital resources will consist primarily of cash generated from operations, remaining cash balances, EB-5 program borrowings, amounts available for borrowing, if any, under our senior debt facilities and our subordinated debt facilities, and any additional funds raised through sales of equity.

Liquidity

Cash and cash equivalents, current assets, current liabilities and debt at the end of each period were as follows (in thousands):

	September 30, 2014		December 31, 2013
Cash and cash equivalents	$	5,494	$	4,926
Current assets (including cash, cash equivalents, and deposits)		12,595		12,707
Current liabilities (excluding short term debt)		16,543		18,151
Short & long term debt and other long term liabilities		77,915		91,758

Our principal sources of liquidity have been cash provided by operations and borrowings under various debt arrangements. Our principal uses of cash have been to service indebtedness and capital expenditures.  We anticipate these uses will continue to be our principal uses of cash in the future. Global financial and credit markets have been volatile in recent years, and future adverse conditions of these markets could negatively affect our ability to secure funds or raise capital at a reasonable cost or at all. For additional discussion of our various debt arrangements see Note 5.  Notes Payable of the Notes to Consolidated Financial Statements in Part I, Item 1 of this Form 10-Q, which is incorporated herein by reference.

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During the months representing the second half of 2013 and three quarters of 2014, we have experienced a strong positive spread between the prices of ethanol and WDG and the prices of feedstock and natural gas, which has improved our results of operations.  This favorable spread is driven by a strong corn harvest in the fall of 2013 resulting in lower corn costs, domestic export of ethanol into the international market and favorable logistics for ethanol producers in our region. We operate in a volatile market in which we have little control over the major components of production costs and product revenues.  As such, we expect that cash provided by operating activities will fluctuate in future periods primarily as a result of changes in the prices for corn, grain sorghum, ethanol, WDG, corn oil, CDS,  biodiesel, waste fats and oils, NPRO and natural gas. To the extent that we experience periods in which the spread between ethanol prices and corn and energy costs narrow or the spread between  biodiesel prices and waste fats and oils or palm oil and energy costs narrow, we may require additional working capital to fund operations. 

Management believes that through:  (i) operating the Keyes plant in the current positive operating margin environment, (ii) continuing to incorporate lower-cost non-food advanced biofuels feedstock at the Keyes plant, such as grain sorghum, thereby increasing operating margins, (iii) selling additional EB-5 Notes, (iv) refinancing senior debt on terms more commensurate with the long-term financing of capital assets, (v)  securing higher volumes of international shipments from the Kakinada plant, and (vi) continuing to expand the domestic India markets as the subsidy on diesel is eliminated, the Company will be able to obtain the liquidity necessary to fund company operations for the foreseeable future however there is no assurance that our operations will generate significant positive cash flow, or that additional funds will be available to us, through borrowings  or otherwise, on favorable terms when required, or at all. 

At September 30, 2014, the outstanding balance of principal, interest and fees, net of discounts, on all Third Eye Capital Notes equaled $54.3 million. The current maturity date for all of the Third Eye Capital Notes is July 1, 2015.  On November 7, 2014, Third Eye Capital agreed to Amendment No. 8 to the Note Purchase Agreement to extend a line of credit in the amount of $6.0 million available for advance to Aemetis, such advance to be added to the outstanding principal balance of the existing notes under the Note Purchase Agreement. In addition, Third Eye Capital agreed to give Aemetis the right to extend the maturity date of the notes to January 1,2016 upon notice and payment of a 3% extension fee. As consideration, Company agreed to an amendment fee in the amount of $0.3 million which will be paid from the proceeds of the advance. After the payment of fees, $5.7 million remains available to be drawn under the Third Eye Capital notes.We intend to pay the Notes through operational cash flow, EB-5 subordinated debt, a senior debt refinancing and/or equity financing.  We have engaged an investment bank to assist with exploring financing alternatives.  We believe that we should be able to refinance our senior debt facility with commercial rates commensurate with our current credit profile.

Our senior lender has provided a series of accommodating amendments to the existing and previous loan facilities in the past as described in further detail in Note 5. Notes Payable of the Notes to Consolidated Financial Statements in Part I, Item 1 of this Form 10-Q, which is incorporated herein by reference.  However, there can be no assurance that our senior lender will continue to provide further amendments or accommodations or will fund additional amounts in the future.

During the nine months ended September 30, 2014, we used cash flows from operations to fund our operations and made principal payments of $22.2 million against the Revolving Credit Facility with our senior lender. 

We also rely on our working capital lines with J.D. Heiskell in California and Secunderabad Oil Limited, in India to fund our commercial arrangements for the acquisitions of feedstock.  J.D. Heiskell currently provides us with working capital for our California ethanol plant and Secunderabad Oil Limited currently provides us with working capital for our Kakinada facility.  The ability of both J.D. Heiskell and Secunderabad Oil Limited to continue to provide us with working capital depends in part on both of their respective financial strength and banking relationships.

Change in Working Capital and Cash Flows

During the nine months ended September 30, 2014, current and long term debt decreased $14.1 million primarily due to (i) payments of principal of $22.2 million to our senior lender, $0.9 million to subordinated lender and $0.5 million to the State Bank of India, (ii) the reclassification of $0.4 million from debt to other liabilities pursuant to settlement agreement with DBED (Department of Business and Economic Development) investors, (iii) a conversion of  $47 thousand of principal plus interest of a promissory note into the Company’s common stock at $2.50 a share, (iv) $4.2 million of principal payments to our working capital partners in India and (v) payments of interest of $6.8 million.  The decrease in current and long term debt was offset by increases due to:  (i) accrued interest of $7.4 million, and (ii) additional borrowings net of payments of $0.5 million received from an EB-5 investor and $7.6 million in working capital loans from our working capital arrangement with Secunderabad Oils Limited.  Current assets decreased slightly by $112 thousand due to  (i) a $0.6 million increase in cash from operations, (ii) a $2.3 million decrease in accounts receivable, (iii) a  $0.5 million increase in prepaid expenses and other assets and (iv) a $1.1 million increase in inventory.

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Net cash provided by operating activities during the nine months ended September 30, 2014 was $22.0 million consisting of non-cash charges of $10.9 million, net changes in operating assets and liabilities of $0.2 million, and net income of $10.9 million. The non-cash charges consisted of: (i) $5.5 million in amortization of debt issuance costs and patents, (ii) $3.5 million in depreciation expenses, (iii) a $0.4 million in stock-based compensation expense, (iv) $1.3 million in loss on extinguishment of debt, and (v) $0.2 million in each of fair value changes in warrant liability and loss on sale of assets. Net changes in operating assets and liabilities consisted primarily of a  decrease in accounts receivable of $2.3 million and $0.4 million in prepaid expenses partially offset by a: (i) a $0.3 million decrease in accounts payable, (ii) a $1.5 million decrease in other liabilities, (iii) a $0.3 million increase in other assets, (iv) a $1.1 million increase in inventory, and a $0.7 million increase in accrued interest.

Cash used by investing activities was $1.7 million primarily for the purchase of capital equipment of $1.8 million offset by proceeds received of $0.1 million on the sale of equipment.

Cash used by financing activities was $19.6 million primarily from proceeds from borrowings of $8.1 million, offset by payments in principal on long-term term loans of $27.7 million.

As of the publication of this report, no amounts remained available for future draw on the Revolving Loan Facility.

Critical Accounting Policies

Our discussion and analysis of our financial condition and results of operations are based upon our consolidated financial statements, which have been prepared in accordance with accounting principles generally accepted in the United States of America. The preparation of these financial statements requires us to make estimates and judgments that affect the reported amounts of assets and liabilities and disclosure of contingent assets and liabilities at the date of the financial statements and the reported amount of net sales and expenses for each period. We believe that of our most significant accounting policies, the following represents our critical accounting policies, defined as those policies that we believe are the most important to the portrayal of our financial condition and results of operations and that require management’s most difficult, subjective or complex judgments, often as a result of the need to make estimates about the effects of matters that are inherently uncertain: revenue recognition; recoverability of long-lived assets, convertible notes, and extinguishment accounting. These significant accounting principles are more fully described in “Management’s Discussion and Analysis of Financial Condition and Results of Operations - Critical Accounting Policies” in our Annual Report on Form 10-K for the year ended December 31, 2013.

Recently Issued Accounting Pronouncements

From time to time, new accounting pronouncements are issued by the Financial Accounting Standards Board (FASB) or other standard setting bodies that are adopted by the Company as of the specified effective date. Unless otherwise discussed, we believe that the impact of recently issued standards that are not yet effective will not have a material impact on our financial position or results of operations upon adoption.

In May 2014 , the FASB issued ASU No. 2014-09, Revenue from Contracts with Customers (Topic 606), which supersedes all existing revenue recognition requirements, including most industry-specific guidance. The new standard requires a company to recognize revenue when it transfers goods or services to customers in an amount that reflects the consideration that the company expects to receive for those goods or services. The new standard will be effective for us on January 1, 2017. We are currently evaluating the potential impact that Topic 606 may have on our financial position and results of operations.

Item 3.                 Quantitative and Qualitative Disclosures about Market Risk.

Not applicable.

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Item 4. Controls and Procedures.

Evaluation of Disclosure Controls and Procedures.

Management (with the participation of our Chief Executive Officer (“CEO”) and Chief Financial Officer (“CFO”)), carried out an evaluation of the effectiveness of the design and operation of our disclosure controls and procedures, as defined in Rules 13a-15(e) and 15d-15(e) under the Securities Exchange Act of 1934, as amended (the “Exchange Act”). Based on this evaluation, our principal executive officer and principal financial officer concluded that, as of the end of the period covered in this report, our disclosure controls and procedures are effective to ensure that information required to be disclosed by us in reports that we file or submit under the Exchange Act is recorded, processed, summarized and reported within the time periods specified in Securities and Exchange Commission rules and forms and to ensure that information required to be disclosed by the Company in the reports the Company files or submits under the Exchange Act is accumulated and communicated to the Company’s management, including its principal executive and principal financial officer, to allow timely decisions regarding required disclosures.

Inherent Limitations on Effectiveness of Controls

Our management does not expect that our disclosure controls or our internal control over financial reporting will prevent or detect all error and all fraud. A control system, no matter how well designed and operated, can provide only reasonable, not absolute, assurance that the control system’s objectives will be met. Our controls and procedures are designed to provide reasonable assurance that our control system’s objective will be met and our CEO and CFO have concluded that our disclosure controls and procedures are effective at the reasonable assurance level. The design of a control system must reflect the fact that there are resource constraints, and the benefits of controls must be considered relative to their costs. Further, because of the inherent limitations in all control systems, no evaluation of controls can provide absolute assurance that misstatements due to error or fraud will not occur or that all control issues and instances of fraud, if any, within the company have been detected. These inherent limitations include the realities that judgments in decision-making can be faulty and that breakdowns can occur because of simple error or mistake. Controls can also be circumvented by the individual acts of some persons, by collusion of two or more people, or by management override of the controls. The design of any system of controls is based in part on certain assumptions about the likelihood of future events and there can be no assurance that any design will succeed in achieving its stated goals under all potential future conditions. Projections of any evaluation of the effectiveness of controls in future periods are subject to risks. Over time, controls may become inadequate because of changes in conditions or deterioration in the degree of compliance with policies or procedures.

Changes in Internal Control over Financial Reporting

There were no changes in our internal controls over financial reporting during our most recently completed fiscal quarter that have materially affected, or are reasonably likely to materially affect, our internal control over financial reporting.

PART II -- OTHER INFORMATION

Item 1.                 Legal Proceedings

On March 10, 2011, one of our subsidiaries, Universal Biofuels Pvt. Ltd. (“UBPL”), received a demand notice from the State Bank of India under the Agreement of Loan for Overall Limit dated as of June 26, 2008. The notice informs UBPL that an event of default has occurred for failure to make an installment payment on the loan commencing June 2009 and demands repayment of the entire outstanding indebtedness of 19.60 crore rupees (approximately $3.2 million) together with all accrued interest thereon and any applicable fees and expenses.  Upon the occurrence and during the continuance of an Event of Default, interest accrues at the default interest rate of 2% above the State Bank of India Advance Rate. The default period began on July 1, 2009 when the principal payment was deemed past due; and we have accrued interest at the default rate since the beginning of the default period.  In addition, since the bank demanded payment of the balance, we have classified the entire loan amount as current. The State Bank of India has filed a legal case before the Debt Recovery Tribunal (“DRT”), Hyderabad, for recovery of approximately $5.0 million against the Company and also impleaded Andhra Pradesh Industrial Infrastructure Corporation (“APIIC”) to expedite the process of registration of the factory land for which counter reply is yet to be filed by APIIC. UBPL asserts that the State Bank of India did not provide the committed funding of the working capital loan and only funded a portion of the term loan, thus requiring the Company to enter into a working capital facility at unfavorable terms which served to hinder the business from developing at the planned rate. The State Bank of India has additionally required the personal guarantee of our Executive Officer and the registration of the land underlying the factory as conditions prior to restructure of the loan. Payments have recently been made against the facility; however, the State Bank of India has rejected these payments as a good faith effort. In January 2014, the Company made payment of $162 thousand (1 crore rupees) against principal on the facility which was accepted by the State Bank of India. UBPL filed for a stay against further collection efforts pending the development of sufficient business in a domestic or international market that would allow UBPL to make meaningful repayments against the facility.  In May 2014, the Company obtained an interim stay subject to payments of 1 crore rupees (approximately $0.2 million) each by May 15, 2014 and June 15, 2014. In the event that the Company is unable to prevail in the aforementioned legal case, DRT may pass a decree for recovery of the amount due, which could include seizing company property for recovery of amounts due.

37

On August 4, 2013, GS Cleantech Corporation, a subsidiary of Greenshift Corporation (“Greenshift”), filed a complaint in the United States District for the Eastern District of California – Fresno Division against the Company and its subsidiary, AAFK. The case was transferred to the Southern District of Indiana and joined as tag-along defendants to a pending Multidistrict Litigation with over a dozen original defendants. The complaint alleges infringement of patent rights assigned to Greenshift that pertain to certain corn oil extraction processes that the Company employs and seeks royalties, damages, treble damages, and attorney’s fees, along with injunctions precluding the Company from infringing its patent rights. The corn oil extraction process we use is licensed to us by Valicor Separation Technologies LLC, formerly called Solution Recovery Services LLC (“SRS”). The process provider has no obligations to indemnify us. On September 12, 2013, the Company, along with its subsidiary, filed its answer and counterclaims. In response to a motion for summary judgment filed by the original defendants, on October 23, 2014, the Court ruled that all the claims of all the patents at issue in the case are invalid. We expect Greenshift will appeal; however, the likelihood of Greenshift succeeding on appeal is small since the Court’s findings included summary judgments on several grounds for each allegedly infringed patent. Damages being sought in this litigation are based on a reasonable royalty to or lost profits of Greenshift. Because of its recent summary judgment findings, it is highly unlikely the court would find the case exceptional and eligible for an award to Greenshift of attorney’s fees. If Greenshift successfully appeals the District Court’s findings of invalidity, damages may be $1 million or more. The Company believes the claims to be without merit and is vigorously defending itself. If we are not successful in our defense, we would be liable for damages and at least our own attorneys’ fees. The Company’s counterclaims include patent invalidity due to obviousness (and the Court has summarily ruled in favor of the original defendants’ identical counterclaim), non- infringement, and inequitable conduct.   We are not currently able to predict the outcome of this litigation against the Company with any degree of certainty.

On August 21, 2012, UBS Securities LLC (“UBS”) filed a complaint in the United States District Court for the Southern District of New York against the Company for damages based on a breach of contract theory in connection with the Cilion acquisition transaction (“UBS Federal Action”). UBS filed a motion for, and the District Court approved, a judgment against the Company in the liquidated amount of $2.3 million which has been accrued by the Company. UBS filed post-judgment discovery requests and pursued the enforcement of the judgment. Subsequently, on March 13, 2014, UBS also filed a complaint against one of our subsidiaries, Aemetis Advanced Fuels Keyes, Inc. in the state court in the State of New York, alleging breach of the same contract involved in the UBS Federal Action. The Company and AAFK entered into a settlement agreement with UBS in September 2014 whereby the Company paid $1.0 million in September 2014 and will make monthly payments of $0.1 million to UBS until the liquidated amount is fully paid.

Item 1A.                 Risk Factors.

We operate in an evolving industry that presents numerous risks beyond our control that are driven by factors that cannot be predicted. Should any of the risks described in this section, in other documents filed with the SEC, including without limitation our Annual Report on Form 10-K for the year ended December 31, 2013, or in the documents incorporated by reference in this report actually occur, our business, results of operations, financial condition, or stock price could be materially and adversely affected. Investors should carefully consider the risks factors discussed below, in addition to the other information in this report, before making any investment in our securities.

38

Disruptions in ethanol production infrastructure may adversely affect our business, results of operations and financial condition.

Our business depends on the continuing availability of rail, road, port, storage and distribution infrastructure. In particular, due to limited storage capacity at the Keyes Plant and other considerations related to production efficiencies, the Keyes Plant depends on just-in-time delivery of corn and grain sorghum. The delivery and transformation of feedstock requires a significant and uninterrupted supply of corn and grain sorghum, principally delivered by rail, as well as other raw materials and energy, primarily electricity and natural gas. The prices of rail, electricity and natural gas have fluctuated significantly in the past and may fluctuate significantly in the future. The national rail system, as well as local electricity and gas utilities may not be able to reliably supply the rail logistics, electricity and natural gas that the Keyes Plant will need or may not be able to supply those resources on acceptable terms. Any disruptions in the ethanol production infrastructure, whether caused by labor difficulties, earthquakes, storms, other natural disasters or human error or malfeasance or other reasons, could prevent timely deliveries of corn, grain sorghum or other raw materials and energy and may require the Keyes Plants to halt production which could have a material adverse effect on our business, results of operations and financial condition.

We may not receive the funds we expect under our EB-5 program.

While $21 million of EB-5 program funds have been received into escrow as of November 11, 2014, the release of those funds to us is subject to the approval of the USCIS, which could take a year or more to obtain. Additionally, the USCIS could deny approval of the loans, and then we would not receive some or all of the subscribed funds. If the USCIS takes longer to approve the release of funds in escrow, or does not approve the loans at all, it would have a material adverse effect on our cash flows available for operations, and thus could have a material adverse effect on our results of operations.

Our ability to utilize our NOL carryforwards may be limited.

Under the Internal Revenue Code of 1986, as amended (the “Code”), a corporation is generally allowed a deduction in any taxable year for net operating losses (“NOL”) carried over from prior taxable years. As of December 31, 2013, we have U.S. federal NOL carryforwards of approximately $115 million. Such U.S. federal NOL carryforwards expire on various dates between 2027 and 2032. We also have state NOL carryforwards as of December 31, 2013 of approximately $113 million, which expire on various dates between 2027 and 2032.

Our ability to deduct these NOL carryforwards and certain other tax attributes against future taxable income could be limited if we experience an "ownership change," as defined in Section 382 of the Code. In general, an  ownership change may result from one or more transactions increasing the aggregate ownership of certain persons (or groups of persons) in our stock by more than 50 percentage points over a testing period (generally three years). Future direct or indirect changes in the ownership of our stock, including sales or acquisitions of our stock by certain stockholders and purchases and issuances of our stock by us, some of which are not in our control, could result in an ownership change. Any resulting limitation on the use of our NOL carryforwards could result in the payment of taxes above the amounts currently estimated and could have a negative effect on our future results of operations and financial position.

Our business may be significantly disrupted upon the occurrence of a catastrophic event or cyberattack.

Our Keyes plant and India plants are highly automated and rely extensively on the availability of our network infrastructure and our internal technology systems. The failure of our systems due to a catastrophic event, such as an earthquake, fire, flood, tsunami, weather event, telecommunications failure, power failure, cyberattack or war, could adversely impact our business, financial results and financial condition. We have developed disaster recovery plans and maintain backup systems in order to reduce the potential impact of a catastrophic event, however there can be no assurance that these plans and systems would enable us to return to normal business operations.

39

Item 2.                 Unregistered Sales of Equity Securities and Use of Proceeds.

On August 7, 2014, we issued 17,568 shares of our common stock to warrant and option holders pursuant to cashless exercise of the options and warrants at exercise price ranging from $0.10 per share to $5.50 per share at an aggregate cost of 4,932 shares of our common stock.

On August 7, 2014, we issued 206 shares of our common stock to a warrant holder pursuant to an exercise of a warrant at an exercise price of $1.30 per share.

On August 14, 2014, we issued an aggregate of 113,333 shares of our common stock to warrant holders pursuant to exercise of the warrants at an exercise price of $0.01 per share.

On August 25, 2014, we issued 4,818 shares of our common stock to a warrant holder pursuant to an exercise of the warrant at an exercise price of $0.01 per share.

Each of these issuances was exempt from registration under Section 4(2) of the Securities Act of 1933, as amended, as sales of securities not involving any public offering.

 Item 3.                 Defaults Upon Senior Securities.

No unresolved defaults on senior securities occurred during the three months ended September 30, 2014.

Item 4.                 Mine Safety Disclosures.

None

Item 5.                 Other Information.

On November 7, 2014, Third Eye Capital agreed to Amendment No. 8 to the Note Purchase Agreement to extend a line of credit in the amount of $6.0 million available for advance to Aemetis, such advance to be added to the outstanding principal balance of the existing notes under the Note Purchase Agreement. In addition, Third Eye Capital agreed to give Aemetis the right to extend the maturity date of the notes to January 1,2016 upon notice and payment of a 3% extension fee.  Pursuant to the terms of Amendment No.8, Aemetis agreed to a covenant to complete an equity offering of its preferred stock for net proceeds of not less than $20 million with all of such net proceeds to be used to repay the principal outstanding under the Note Purchase Agreement in accordance with the priorities set forth there in.

As consideration for Amendment No.8, the unconditional personal Guaranty from Chairman of the Company, the guaranties from Company parties and McAfee Capital, LLC owned by Mr. Eric McAfee were all reaffirmed. The Company also agreed to pay $0.2 million in consideration to Mr. McAfee and McAfee Capital in exchange for their willingness to provide the guaranties. In addition, Company agreed to an amendment fee to Third Eye Capital in the amount of $0.3 million which will be paid from the proceeds of the advance.

The foregoing description of Amendment No. 8 is only a summary and does not purport to be complete and is qualified in its entirety by reference to the full text of Amendment No. 8, which is filed as Exhibit 10.1 hereto, and is incorporated, by reference herein.

40

Item 6.                 Exhibits.

10.1	Amendment No.8 to Amended and Restated Note Purchase Agreement, dated as of November 7, 2014 by and among Aemetis, Inc., Aemetis Advanced Fuels Keyes, Inc. Aemetis Facility Keyes, Inc.,  Third Eye Capital Corporation, an Ontario corporation, as agent, Third Eye Capital Credit Opportunities Fund - Insight Fund, and Sprott PC Trust.
31.1	Certifications pursuant to Rule 13a-14(a) or 15d-14(a) under the Securities Exchange Act of 1934, as amended, as adopted pursuant to Section 302 of the Sarbanes-Oxley Act of 2002.
31.2	Certifications pursuant to Rule 13a-14(a) or 15d-14(a) under the Securities Exchange Act of 1934, as amended, as adopted pursuant to Section 302 of the Sarbanes- Oxley Act of 2002.
32.1	Certifications pursuant to 18 U.S.C. Section 1350, as adopted pursuant to Section 906 of the Sarbanes-Oxley Act of 2002.
32.2	Certifications pursuant to 18 U.S.C. Section 1350, as adopted pursuant to Section 906 of the Sarbanes-Oxley Act of 2002.

41

SIGNATURES

Pursuant to the requirements of the Securities Exchange Act of 1934, the registrant has duly caused this report to be signed on its behalf by the undersigned thereunto duly authorized.

	AEMETIS, INC.
November 12, 2014	By:	/s/ Eric A. McAfee
		Eric A. McAfee
		Chief Executive Officer (Principal Executive Officer)

42

EX-31.1

EXHIBIT 31.1

CERTIFICATIONS

I, Eric McAfee, certify that:

1. I have reviewed this quarterly report on Form 10-Q for the quarter ended September 30, 2014 of Aemetis, Inc.;

2. Based on my knowledge, this report does not contain any untrue statement of a material fact or omit to state a material fact necessary to make the statements made, in light of the circumstances under which such statements were made, not misleading with respect to the period covered by this report;

3. Based on my knowledge, the financial statements, and other financial information included in this report, fairly present in all material respects the financial condition, results of operations and cash flows of the registrant as of, and for, the periods presented in this report;

4. The registrant's other certifying officer and I are responsible for establishing and maintaining disclosure controls and procedures (as defined in Exchange Act Rules 13a-15(e) and 15d-15(e)) and internal control over financial reporting (as defined in Exchange Act Rules 13a-15(f) and 15d-15(f) for the registrant and have:

(a) designed such disclosure controls and procedures, or caused such disclosure controls and procedures to be designed under our supervision, to ensure that material information relating to the registrant, including its consolidated subsidiaries, is made known to us by others within those entities, particularly during the period in which this report is being prepared;

(b) designed such internal control over financial reporting, or caused such internal control over financial reporting to be designed under our supervision, to provide reasonable assurance regarding the reliability of financial reporting and the preparation of financial statements, for external purposes in accordance with generally accepted accounting principles;

(c) evaluated the effectiveness of the registrant's disclosure controls and procedures and presented in this report our conclusions about the effectiveness of the disclosure controls and procedures, as of the end of the period covered by this report based on such evaluation; and

(d) disclosed in this report any change in the registrant's internal control over financial reporting that occurred during the registrant's most recent fiscal quarter (the registrant's fourth fiscal quarter in the case of an annual report) that has materially affected, or is reasonably likely to materially affect, the registrant's internal control over financial reporting; and

5. The registrant's other certifying officer and I have disclosed, based on our most recent evaluation of internal control over financial reporting, to the registrant's auditors and the audit committee of the registrant's board of directors (or persons performing the equivalent functions):

(a) all significant deficiencies and material weaknesses in the design or operation of internal control over financial reporting which are reasonably likely to adversely affect the registrant's ability to record, process, summarize and report financial information; and

(b) any fraud, whether or not material, that involves management or other employees who have a significant role in the registrant's internal control over financial reporting.

Date: November 12, 2014

By: /s/ Eric A. McAfee

Eric A. McAfee

Chief Executive Officer

EX-31.2

EXHIBIT 31.2

CERTIFICATIONS

I, Todd Waltz, certify that:

1. I have reviewed this quarterly report on Form 10-Q for the quarter ended September 30, 2014 of Aemetis, Inc.;

2. Based on my knowledge, this report does not contain any untrue statement of a material fact or omit to state a material fact necessary to make the statements made, in light of the circumstances under which such statements were made, not misleading with respect to the period covered by this report;

3. Based on my knowledge, the financial statements, and other financial information included in this report, fairly present in all material respects the financial condition, results of operations and cash flows of the registrant as of, and for, the periods presented in this report;

4. The registrant's other certifying officer and I are responsible for establishing and maintaining disclosure controls and procedures (as defined in Exchange Act Rules 13a-15(e) and 15d-15(e)) and internal control over financial reporting (as defined in Exchange Act Rules 13a-15(f) and 15d-15(f) for the registrant and have:

(a) designed such disclosure controls and procedures, or caused such disclosure controls and procedures to be designed under our supervision, to ensure that material information relating to the registrant, including its consolidated subsidiaries, is made known to us by others within those entities, particularly during the period in which this report is being prepared;

(b) designed such internal control over financial reporting, or caused such internal control over financial reporting to be designed under our supervision, to provide reasonable assurance regarding the reliability of financial reporting and the preparation of financial statements, for external purposes in accordance with generally accepted accounting principles;

(c) evaluated the effectiveness of the registrant's disclosure controls and procedures and presented in this report our conclusions about the effectiveness of the disclosure controls and procedures, as of the end of the period covered by this report based on such evaluation; and

(d) disclosed in this report any change in the registrant's internal control over financial reporting that occurred during the registrant's most recent fiscal quarter (the registrant's fourth fiscal quarter in the case of an annual report) that has materially affected, or is reasonably likely to materially affect, the registrant's internal control over financial reporting; and

5. The registrant's other certifying officer and I have disclosed, based on our most recent evaluation of internal control over financial reporting, to the registrant's auditors and the audit committee of the registrant's board of directors (or persons performing the equivalent functions):

(a) all significant deficiencies and material weaknesses in the design or operation of internal control over financial reporting which are reasonably likely to adversely affect the registrant's ability to record, process, summarize and report financial information; and

(b) any fraud, whether or not material, that involves management or other employees who have a significant role in the registrant's internal control over financial reporting.

Date: November 12, 2014

By: /s/ TODD WALTZ

Todd Waltz

Executive Vice President and Chief Financial Officer

EX-32.1

EXHIBIT 32.1

CERTIFICATION PURSUANT TO 18 U.S.C. SECTION 1350,

AS ADOPTED PURSUANT TO SECTION 906 OF THE SARBANES-OXLEY ACT OF 2002

In connection with the Quarterly Report of Aemetis, Inc. (the "Company") on Form 10-Q for the period ended September 30, 2014, as filed with the Securities and Exchange Commission on the date hereof (the "Report"), I, Eric A. McAfee, Chief Executive Officer of the Company, certify, pursuant to 18 U.S.C. Section 1350, as adopted pursuant to Section 906 of the Sarbanes-Oxley Act of 2002, that:

(1) The Report fully complies with the requirements of section 13(a) or 15(d) of the Securities and Exchange Act of 1934; and

(2) The information contained in the Report fairly presents, in all material respects, the financial condition and results of operations of the Company.

By: /s/ Eric A. McAfee

Eric A. McAfee

Chief Executive Officer

Date: November 12, 2014

EX-32.2

EXHIBIT 32.2

CERTIFICATION PURSUANT TO 18 U.S.C. SECTION 1350,

AS ADOPTED PURSUANT TO SECTION 906 OF THE SARBANES-OXLEY ACT OF 2002

In connection with the Quarterly Report of Aemetis, Inc. (the "Company") on Form 10-Q for the period ended September 30, 2014, as filed with the Securities and Exchange Commission on the date hereof (the "Report"), I, Todd Waltz, Executive Vice President and Chief Financial Officer of the Company, certify, pursuant to 18 U.S.C. Section 1350, as adopted pursuant to Section 906 of the Sarbanes-Oxley Act of 2002, that:

(1) The Report fully complies with the requirements of section 13(a) or 15(d) of the Securities and Exchange Act of 1934; and

(2) The information contained in the Report fairly presents, in all material respects, the financial condition and results of operations of the Company.

By: /s/ TODD WALTZ

Todd Waltz

Executive Vice President and Chief Financial Officer

Date: November 12, 2014

XML

3. Property, Plant and Equipment (Details) (USD $) In Thousands, unless otherwise specified	Sep. 30, 2014	Dec. 31, 2013
Disclosure3.PropertyPlantAndEquipmentDetailsAbstract
Land	$ 2,765	$ 2,765
Plant and Buildings	82,570	82,355
Furniture and fixtures	488	558
Machinery and equipment	3,989	2,076
Construction in progress	53	539
Total gross property, plant & equipment	89,865	88,293
Less accumulated depreciation	(12,817)	(9,365)
Total net property, plant & equipment	$ 77,048	$ 78,928

XML

11. Agreements (Details) (USD $) In Thousands, unless otherwise specified	3 Months Ended		9 Months Ended
	Sep. 30, 2014	Sep. 30, 2013	Sep. 30, 2014	Sep. 30, 2013
Agreements Details
Ethanol sales	$ 33,641	$ 36,936	$ 121,388	$ 69,676
Wet distiller's grains sales	8,175	8,621	30,970	16,605
Corn oil sales	1,018	925	3,263	1,555
Corn purchases	27,616	31,381	94,563	62,970
Milo purchases	0	6,777	0	11,425
Accounts receivable	0	928	0	928
Accounts payable	$ 1,904	$ 2,189	$ 1,904	$ 2,189

XML

7. Outstanding Warrants (Details) (Warrant [Member], USD $)	3 Months Ended
	Sep. 30, 2014	Jun. 30, 2014	Mar. 31, 2014
Warrant [Member]
Number of Warrants Outstanding, Beginning	369	470	470
Number of Warrants Expired	(1)	(47)	0
Number of Warrants Granted	118	0	30
Number of Warrants Exercised	(131)	(54)	30
Number of Warrants Outstanding, Ending	355	369	470
Weighted Average Exercise Price Outstanding, Beginning	$ 2.99	$ 3.41	$ 3.4
Weighted Average Exercise Price Expired	$ 4.66	$ 4.98
Weighted Average Exercise Price Granted	$ 0.01		$ 0.01
Weighted Average Exercise Price Exercised	$ 0.09	$ 4.96	$ 0.01
Weighted Average Exercise Price Outstanding, Ending	$ 3.06	$ 2.99	$ 3.41
Weighted Average Remaining Contractual Life (in years) Outstanding, Beginning	3 years 1 month 13 days	4 years 7 months 6 days	4 years 10 months 6 days
Weighted Average Remaining Contractual Life (in years) Outstanding, Ending	2 years 11 months 5 days	3 years 1 month 13 days	4 years 7 months 6 days

XML

12. Segment Information (Details) (USD $) In Thousands, unless otherwise specified	3 Months Ended		9 Months Ended
	Sep. 30, 2014	Sep. 30, 2013	Sep. 30, 2014	Sep. 30, 2013
Revenues
North America	$ 42,886	$ 49,172	$ 155,966	$ 92,883
India	5,462	7,516	10,242	30,578
Total revenues	48,348	56,688	166,208	123,461
Cost of goods sold
North America	35,632	46,709	121,754	89,851
India	5,001	6,943	9,762	26,576
Total cost of goods sold	40,633	53,652	131,516	116,427
Gross profit/(loss)
North America	7,254	2,463	34,212	3,032
India	461	573	480	4,002
Total gross profit/(loss)	$ 7,715	$ 3,036	$ 34,692	$ 7,034

XML

6. Commitments and Contingencies (Details) (USD $) In Thousands, unless otherwise specified	Sep. 30, 2014
Commitments And Contingencies Details
Future Rent Repayments Year 2015	$ 169

XML

12. Segment Information (Tables)

9 Months Ended

Sep. 30, 2014

Segment Information Tables

Schedule of segment information

	For the three months ended September 30,				For the nine months ended September 30,
	2014		2013		2014		2013
Revenues
North America	$	42,886	$	49,172	$	155,966	$	92,883
India		5,462		7,516		10,242		30,578
Total revenues	$	48,348	$	56,688	$	166,208	$	123,461
Cost of goods sold
North America	$	35,632	$	46,709	$	121,754	$	89,851
India		5,001		6,943		9,762		26,576
Total cost of goods sold	$	40,633	$	53,652	$	131,516	$	116,427
Gross profit/(loss)
North America	$	7,254	$	2,463	$	34,212	$	3,032
India		461		573		480		4,002
Total gross profit	$	7,715	$	3,036	$	34,692	$	7,034

	As of		As of
	September 30,		December 31,
	2014		2013
North America	$	76,981	$	83,183
India		18,124		13,959
Total Assets	$	95,105	$	97,142

XML

13. Related Party Transactions (Details Narrative) (USD $) In Thousands, unless otherwise specified	3 Months Ended		9 Months Ended
	Sep. 30, 2014	Sep. 30, 2013	Sep. 30, 2014	Sep. 30, 2013	Dec. 31, 2013
Related Party Transactions [Abstract]
Due to officers	$ 400		$ 400		$ 1,000
Related party costs	$ 23	$ 40	$ 142	$ 110

XML

4. Intangible Assets and Goodwill (Tables)

9 Months Ended

Sep. 30, 2014

Intangible Assets And Goodwill Tables

Schedule of intangible assets and goodwill

For the twelve months ending September 30,	Amortization
2014	$	104
2015		112
2016		112
2017		112
2018		179
Thereafter		937
Total	$	1,556

XML

9. Fair Value Measurements (Details) (USD $) In Thousands, unless otherwise specified	Sep. 30, 2014
Warranty liability	$ 162
Level 1
Warranty liability	0
Level 2
Warranty liability	0
Level 3
Warranty liability	$ 162

XML

4. Intangible Assets and Goodwill (Details) (USD $) In Thousands, unless otherwise specified	Sep. 30, 2014
Intangible Assets And Goodwill Details
2014	$ 104
2015	112
2016	112
2017	112
2018	179
Thereafter	937
Total	$ 1,556

XML

2. Inventory (Details) (USD $) In Thousands, unless otherwise specified	Sep. 30, 2014	Dec. 31, 2013
RepaymentsOfBorrowingsUnderShortTermFacilities
Raw materials	$ 3,087	$ 597
Work-in-progress	1,457	1,724
Finished goods	634	1,777
Total inventory	$ 5,178	$ 4,098

XML

10. Stock Based Compensation (Details) (Employee Stock Plan, USD $)	9 Months Ended
	Sep. 30, 2014
Employee Stock Plan
Shares Available for Grant, Beginning	74
Shares Available for Grant, Authorized	100
Shares Available for Grant, Number of Shares Granted	(148)
Shares Available for Grant, Exercised	0
Shares Available for Grant, Forfeited/Expired	70
Shares Available for Grant, Ending	97
Number of Shares Outstanding, Beginning	913
Number of Shares Authorized	0
Number of Shares Granted	148
Number of Shares Exercised	(155)
Number of Shares Forfeited/Expired	(70)
Number of Shares Outstanding, Ending	835
Weighted Average Exercise Price Outstanding, Beginning	$ 4.9
Weighted Average Exercise Price Authorized
Weighted Average Exercise Price Granted	$ 4.2
Weighted Average Exercise Price Exercised	$ 1.66
Weighted Average Exercise Price Forfeited/Expired	$ 2.82
Weighted Average Exercise Price Outstanding, Ending	$ 5.61

XML

6. Commitments and Contingencies (Details Narrative) (USD $) In Thousands, unless otherwise specified	3 Months Ended		9 Months Ended
	Sep. 30, 2014	Sep. 30, 2013	Sep. 30, 2014	Sep. 30, 2013
Commitments And Contingencies Details Narrative
Rent expense	$ 108	$ 105	$ 320	$ 316

XML

4. Intangible Assets and Goodwill

9 Months Ended

Sep. 30, 2014

Goodwill and Intangible Assets Disclosure [Abstract]

4. Intangible Assets and Goodwill

Intangible assets and goodwill consist of $1.0 million in patents, $0.6 million in in-process research and development and $1.0 million in goodwill. Following ASC 350-20-35 guidance, goodwill and indefinite lived intangibles are tested annually in December for impairment at the Aemetis Technologies, Inc. reporting unit level.  During the three months ended September 30, 2014 and 2013, the Company recognized amortization expense of $20 thousand each period respectively, related to patents. During the nine months ended September 30, 2014 and 2013, the Company recognized amortization expense of $60 thousand and $164 thousand, respectively, related to patents.

Future patent and in-process research and development amortization for the next five years and beyond consists of the following:

For the twelve months ending September 30,	Amortization
2014	$	104
2015		112
2016		112
2017		112
2018		179
Thereafter		937
Total	$	1,556

XML

4. Intangible Assets and Goodwill (Details Narrative) (USD $) In Thousands, unless otherwise specified	3 Months Ended		9 Months Ended
	Sep. 30, 2014	Sep. 30, 2013	Sep. 30, 2014	Sep. 30, 2013
Amortization expense			$ 95	$ 164
Intangible assets	1,556		1,556
Goodwill	1,000		1,000
Patents
Amortization expense	20	20	60	164
Intangible assets	1,000		1,000
In-process research and development
Intangible assets	$ 600		$ 600

XML

8. Fair Value of Warrants (Tables)

9 Months Ended

Sep. 30, 2014

Fair Value Of Warrants Tables

Schedule of fair value of liability warrants

Expected dividend yield		0	%
Risk-free interest rate		1.07	%
Expected volatility		81.02% - 92.51	%
Expected Life (years)		2.7 - 3.3
Exercise price	$	0.01
Company stock price	$	8.68

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7. Outstanding Warrants (Tables)

9 Months Ended

Sep. 30, 2014

Outstanding Warrants Tables

Schedule of warrant activity

	Warrants Outstanding & Exercisable			Weighted - Average Exercise Price	Average Remaining Term in Years
Outstanding December 31, 2013	470		$	3.40	4.85
Expired	-			-
Granted	30			0.01
Exercised	(30	)		0.01
Outstanding March 31, 2014	470		$	3.41	4.60
Expired	(47	)		4.98
Granted	-			-
Exercised	(54	)		4.96
Outstanding June 30, 2014	369		$	2.99	3.12
Expired	(1	)		4.66
Granted	118			0.01
Exercised	(131	)		0.09
Outstanding September 30, 2014	355		$	3.06	2.93

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12. Segment Information (Details 1) (USD $) In Thousands, unless otherwise specified	Sep. 30, 2014	Dec. 31, 2013
Segment Information Details 1
North America	$ 76,981	$ 83,183
India	18,124	13,959
Total Assets	$ 95,105	$ 97,142

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5. Notes Payable (Details) (USD $) In Thousands, unless otherwise specified	Sep. 30, 2014	Dec. 31, 2013
Total revenues
Third Eye Capital term note	$ 7,369	$ 7,193
Third Eye Capital revolving credit facility	19,095	38,349
Third Eye Capital revenue participation term note	10,162	9,465
Third Eye Capital acquisition term note	17,677	17,280
Cilion shareholder Seller note payable	5,335	4,869
State Bank of India secured term loan	5,950	5,857
Subordinated notes	5,265	5,317
EB-5 long term promissory notes	1,538	1,037
Unsecured working capital loans and short-term notes	5,232	2,391
Total debt	77,623	91,758
Less current portion of debt	16,446	17,966
Total long term debt	$ 61,177	$ 73,792

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9. Fair Value Measurements (Tables)

9 Months Ended

Sep. 30, 2014

Fair Value Measurements Tables

Schedule of financial liabilities measured at fair value

	Total		Level 1		Level 2		Level 3
Warrant liability	$	162	$	-	$	-	$	162

Schedule of activity for liabilities measured at fair value

Balance as of December 31, 2013	$	60
Issuances of warrant liabilities		-
Exercise of warrant liabilities		-
Related change in fair value		48
Balance as of March 31, 2014	$	108
Issuances of warrant liabilities		-
Exercise of warrant liabilities		-
Related change in fair value		71
Balance as of June 30, 2014	$	179
Issuances of warrant liabilities		-
Exercise of warrant liabilities		-
Related change in fair value		(17	)
Balance as of September 30, 2014	$	162

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10. Stock Based Compensation (Tables)

9 Months Ended

Sep. 30, 2014

Stock Based Compensation Tables

Schedule of options granted under employee stock plans

Nine months ended	Shares Available for Grant			Number of Shares Outstanding			Weighted-Average Exercise Price
Balance as of December 31, 2013		74			913		$	4.90
Authorized		100			—			—
Granted		(148	)		148			4.20
Exercised		—			(155	)		1.66
Forfeited/expired		70			(70	)		2.82
Balance as of September 30, 2014		97			835		$	5.61

Schedule of weighted average fair value calculations for options

	As of September 30
	2014			2013
Dividend-yield		0	%		0	%
Risk-free interest rate		0. 02 - 0.83	%		0.18 - 0.42	%
Expected volatility		56.35 - 91.33	%		74.83 - 142.90	%
Expected life (years)		0.3 - 3.0			0.5 - 3.0
Market value of common stock	$	8.68		$	3.20

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3. Property, Plant and Equipment

9 Months Ended

Sep. 30, 2014

Property, Plant and Equipment [Abstract]

3. Property, Plant and Equipment

Property, plant and equipment consist of the following:

		September 30, 2014			December 31, 2013
Land	$	2,765		$	2,765
Plant and Buildings		82,570			82,355
Furniture and fixtures		488			558
Machinery and equipment		3,989			2,076
Construction in progress		53			539
Total gross property, plant & equipment		89,865			88,293
Less accumulated depreciation		(12,817	)		(9,365	)
Total net property, plant & equipment	$	77,048		$	78,928

Depreciation on the components of the property, plant and equipment is calculated using the straight-line method to allocate their depreciable amounts over their estimated useful lives as follows:

	Years
Plant and Buildings		20 - 30
Machinery & Equipment		5 - 7
Furniture & Fixtures		3 - 5

For the three months ended September 30, 2014 and September 30, 2013, the Company recorded depreciation expense of $1.2 million for each period respectively. For the nine months ended September 30, 2014 and September 30, 2013, the Company recorded depreciation expense of $3.5 million each period, respectively.

Management is required to evaluate these long-lived assets for impairment whenever events or changes in circumstances indicate that their carrying amounts may not be recoverable. Management determined there were no triggering events on the long-lived assets during the three and nine months ended September 30, 2014.

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11. Agreements (Tables)

9 Months Ended

Sep. 30, 2014

Agreements Tables

Schedule of working capital agreement activity

		Three months ended September 30,				Nine months ended September 30,
		2014		2013		2014		2013
Ethanol sales	$	33,641	$	36,936	$	121,388	$	69,676
Wet distiller's grains sales		8,175		8,621		30,970		16,605
Corn oil sales		1,018		925		3,263		1,555
Corn purchases		27,616		31,381		94,563		62,970
Milo Purchases		-		6,777		-		11,425
Accounts receivable		-		928		-		928
Accounts payable		1,904		2,189		1,904		2,189

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3. Property, Plant and Equipment (Details 1)	9 Months Ended
	Sep. 30, 2014
Plant and buildings | Minimum
Useful life	20 years
Plant and buildings | Maximum
Useful life	30 years
Machinery & Equipment | Minimum
Useful life	5 years
Machinery & Equipment | Maximum
Useful life	7 years
Furniture & Fixtures | Minimum
Useful life	3 years
Furniture & Fixtures | Maximum
Useful life	5 years

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10. Stock Based Compensation (Details 1) (USD $)	9 Months Ended
	Sep. 30, 2014	Sep. 30, 2013
Dividend-yield	0.00%	0.00%
Market value of common stock	$ 8.68	$ 3.2
Minimum [Member]
Risk-free interest rate	0.02%	0.18%
Expected volatility	56.35%	74.83%
Expected life (years)	3 months 18 days	6 months
Maximum [Member]
Risk-free interest rate	0.83%	0.42%
Expected volatility	91.33%	142.90%
Expected life (years)	3 years	3 years

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CONSOLIDATED CONDENSED BALANCE SHEET (Unaudited) (USD $) In Thousands, unless otherwise specified	Sep. 30, 2014		Dec. 31, 2013
Current assets:
Cash and cash equivalents	$ 5,494		$ 4,926
Accounts receivable	438		2,764
Inventories	5,178		4,098
Prepaid expenses	866		584
Other current assets	619		335
Total current assets	12,595		12,707
Property, plant and equipment, net	77,048		78,928
Goodwil	968		968
Intangible assets, net of accumulated amortization of $244 and $184, respectively	1,556		1,616
Other assets	2,938		2,923
Total assets	95,105		97,142
Current liabilities:
Accounts payable	9,018		9,366
Current portion of long term	5,950		10,257
Short term borrowings	10,496		7,709
Mandatorily redeemable Series B convertible preferred stock	2,616		2,540
Other current liabilities	4,909		6,245
Total current liabilities	32,989		36,117
Long term liabilities
Long term debt	61,177		73,792
Other long term liability	292		0
Total long term liabilities	61,469		73,792
Stockholders' equity (deficit):
Series B convertible preferred stock, $0.001 par value; 7,235 authorized; 2,032 and 2,401 shares issued and outstanding each period, respectively (aggregate liquidation preference of $6,096 and $7,203, respectively)	2		2
Common stock, $0.001 par value; 40,000 authorized; 20,610 and 19,974 shares issued and outstanding, respectively *	21	[1]	20	[1]
Additional paid-in capital	86,903	[1]	84,373	[1]
Accumulated deficit	(83,373)		(94,246)
Accumulated other comprehensive loss	(2,906)		(2,916)
Total stockholders' equity (deficit)	647		(12,767)
Total liabilities and stockholders' equity (deficit)	$ 95,105		$ 97,142

[1] The Common Stock and Additional paid-in capital for all periods presented reflect the one-for-ten reverse split, which took effect May 15, 2014.

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5. Notes Payable (Details 1) (USD $) In Thousands, unless otherwise specified	Sep. 30, 2014
For the twelve months ending
2015	$ 16,617
2016	58,335	[1]
2017	3,624
2018	0
2019	500
Total debts	79,076
Discounts	(1,453)
Total debt, net of discounts	$ 77,623

[1] Due to the Companys ability to extend the maturity of the Third Eye Capital notes by six months from the scheduled maturity of July 2015, the amounts are reflected above as a 2016 maturity.

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1. Nature of Activities and Summary of Significant Accounting Policies

9 Months Ended

Sep. 30, 2014

Accounting Policies [Abstract]

1. Nature of Activities and Summary of Significant Accounting Policies

Nature of Activities. These consolidated financial statements include the accounts of Aemetis, Inc., a Nevada corporation, and its wholly owned subsidiaries (collectively, “Aemetis” or the “Company”):

●   Aemetis Americas, Inc., a Nevada corporation and its subsidiary AE Biofuels, Inc., a Delaware corporation;

●   Biofuels Marketing, Inc., a Delaware corporation;

●   Aemetis International, Inc., a Nevada corporation and its subsidiary International Biofuels, Ltd., a Mauritius corporation and its subsidiary Universal Biofuels Private, Ltd., an India company;

●   Aemetis Technologies, Inc., a Delaware corporation;

●   Aemetis Biochemicals, Inc., a Nevada corporation;

●   Aemetis Biofuels, Inc., a Delaware corporation and its subsidiary Energy Enzymes, Inc., a Delaware corporation;

●   AE Advanced Fuels, Inc., a Delaware corporation and its subsidiaries Aemetis Advanced Fuels Keyes, Inc., a Delaware corporation and Aemetis Facility Keyes, Inc., a Delaware corporation;

●   Aemetis Advanced Fuels, Inc., a Nevada corporation; and,

●   Aemetis Advanced Products Keyes, Inc., a Delaware corporation.

Aemetis is an advanced renewable fuels and biochemicals company focused on the acquisition, development and commercialization of innovative technologies that replace traditional petroleum-based products by the conversion of first generation ethanol and  biodiesel plants into advanced biorefineries.  The Company owns and operates a plant in Keyes, California where the Company manufactures and produces ethanol, wet distillers’ grain (WDG), condensed distillers solubles (CDS) and corn oil and a manufacturing and refining facility in Kakinada, India where the Company manufactures and produces fatty acid methyl ester ( biodiesel), crude and refined glycerin and refined palm oil.  In September 2013, the Company received approval by the US Environmental Protection Agency to produce ethanol using grain sorghum and biogas along with the Keyes plant existing combined heat and power systems to generate higher value D5 Advanced Biofuel Renewable Identification Numbers (RIN’s).  In April 2014, the Company received the International Sustainability and Carbon Certification for the production of  biodiesel at the India plant from certain oils and fats for sale into European markets.  The Company completed the EPA Process for importation of our India biodiesel into the United States. In addition, the Company is continuing  research and development focused on microbial technologies for the commercialization of renewable industrial biofuels and biochemicals.

Basis of Presentation and Consolidation. The consolidated condensed financial statements include the accounts of Aemetis, Inc. and its subsidiaries. All intercompany balances and transactions have been eliminated in consolidation. The accompanying consolidated condensed balance sheet as of September 30, 2014, the consolidated condensed statements of operations and comprehensive income/(loss) for the three and nine months ended September 30, 2014 and 2013, and the consolidated condensed statements of cash flows for the nine months ended September 30, 2014 and 2013 are unaudited. The consolidated condensed balance sheet as of December 31, 2013 was derived from the 2013 audited consolidated financial statements and notes thereto. The consolidated condensed financial statements in this report should be read in conjunction with the 2013 audited consolidated financial statements and notes thereto included in the Company’s annual report on Form 10-K for the year ended December 31, 2013.

The accompanying consolidated condensed financial statements have been prepared in accordance with accounting principles generally accepted in the United States (U.S. GAAP) and pursuant to the rules and regulations of the SEC. Certain information and footnote disclosures normally included in financial statements prepared in accordance with U.S. GAAP have been condensed or omitted pursuant to such rules and regulations.

In the opinion of management, the unaudited interim consolidated condensed financial statements for the three and nine months ended September 30, 2014 and 2013 have been prepared on the same basis as the audited consolidated statements as of December 31, 2013 and reflect all adjustments, consisting primarily of normal recurring adjustments, necessary for the fair presentation of its statement of financial position, results of operations and cash flows. The results of operations for the three and nine months ended September 30, 2014 are not necessarily indicative of the operating results for any subsequent quarter, for the full fiscal year or any future periods.

Reverse Stock Split. In April 2014, our board of directors approved, and submitted a proposal to our stockholders for approval of a 1 for 10 reverse split of our common stock (the “Reverse Stock Split”).  The Reverse Stock Split was intended to increase the market price of our common stock to enhance our ability to meet the initial listing requirements of the NASDAQ Global Market and to make our common stock more attractive to a broader range of institutional and other investors.  Our stockholders approved the Reverse Stock Split on May 9, 2014 and we filed a Certificate of Change with the Secretary of State of the State of Nevada to effect the Reverse Stock Split on May 9, 2014.  The Reverse Stock Split became effective with the Financial Industry Regulatory Authority (FINRA) on May 15, 2014. Trading on the NASDAQ Global Market commenced on June 5, 2014.
 

Upon the effectiveness of the Reverse Stock Split, every ten shares of issued and outstanding and authorized Aemetis common stock was automatically combined into one share of common stock with any fractional shares rounded up to the next whole share and without any change in the per share par value.  The Reverse Stock Split reduced the number of outstanding shares of Aemetis common stock from approximately 201.7 million shares to approximately 20.2 million shares.  The authorized shares of Aemetis common stock were also proportionally reduced from 400 million shares to 40 million shares.

Unless otherwise indicated, all share amounts, per share data, share prices, exercise prices and conversion rates set forth in these notes and the accompanying consolidated financial statements have, where applicable, been adjusted to reflect three Reverse Stock Split.

Use of Estimates.  The preparation of financial statements in conformity with U.S. GAAP requires management to make estimates and assumptions that affect the reported amounts of assets and liabilities and disclosure of contingent assets and liabilities at the date of the financial statements and revenues and expenses during the reporting period.  To the extent there are material differences between these estimates and actual results, the Company’s consolidated financial statements will be affected.

Revenue recognition. The Company recognizes revenue when there is persuasive evidence of an arrangement, delivery has occurred, the price is fixed or determinable and collection is reasonably assured. The Company records revenues based upon the gross amounts billed to its customers. Revenue from nonmonetary transactions, principally in-kind by-products received in exchange for material processing where the by-product is contemplated by contract to provide value, is recognized at the quoted market price of those goods received or by-products.

Cost of Goods Sold. Cost of goods sold includes those costs directly associated with the production of revenues, such as raw material, factory overhead and other direct production costs.  During periods of idle plant capacity, costs otherwise charged to cost of goods sold are reclassified to selling, general and administrative expense.

Shipping and Handling Costs. Shipping and handling costs are classified as a component of cost of goods sold in the accompanying consolidated statements of operations.

Reclassifications. Certain prior quarter amounts were reclassified to conform to current period presentation. These reclassifications had no impact on previously reported net loss or accumulated deficit.

Research and Development. Research and development costs are expensed as incurred, unless they have alternative future uses to the Company.

Cash and Cash Equivalents. The Company considers all highly liquid investments with an original maturity of three months or less to be cash equivalents. The Company maintains cash balances at various financial institutions domestically and abroad. The Federal Deposit Insurance Corporation (FDIC) insures domestic cash accounts. The Company’s accounts at these institutions may at times exceed federally insured limits. The Company has not experienced any losses in such accounts.

Accounts Receivable.  The Company sells ethanol, wet distiller grains, condensed distillers solubles  and corn oil directly and through third-party marketing arrangements generally without requiring collateral.  The Company sells  biodiesel, glycerin and processed natural oils to a variety of customers and may require advanced payment based on the size and creditworthiness of the customer.  Accounts receivable consist of product sales made to large creditworthy customers. Trade accounts receivable are presented at original invoice amount, net of the allowance for doubtful accounts.

The Company maintains an allowance for doubtful accounts for balances that appear to have specific collection issues. The collection process is based on the age of the invoice and requires attempted contacts with the customer at specified intervals. If, after a specified number of days, the Company has been unsuccessful in its collection efforts, a bad debt allowance is recorded for the balance in question. Delinquent accounts receivable are charged against the allowance for doubtful accounts once a lack of collectability has been determined. The factors considered in reaching this determination are the apparent financial condition of the customer and the Company’s success in contacting and negotiating with the customer. If the financial condition of the Company’s customers were to deteriorate, additional allowances may be required.

Inventories. Inventories are stated at the lower of cost, using the first-in and first-out (FIFO) method, or market.

Property, Plant and Equipment. Property, plant and equipment are carried at cost less accumulated depreciation after assets are placed in service and are comprised primarily of buildings, furniture, machinery, equipment, land, and plants in North America and India. When property, plant and equipment are acquired as part of an acquisition, the items are recorded at fair value on the purchase date. It is the Company policy to depreciate capital assets over their estimated useful lives using the straight-line method.

Goodwill and Intangible Assets. Intangible assets consist of intellectual property in the form of patents pending, in-process research and development and goodwill. Once the patents pending or in-process R&D have secured a definite life in the form of a patent or product, they will be carried at cost less accumulated amortization over their estimated useful life. Amortization commences upon the commercial application or generation of revenue and is amortized over the shorter of the economic life or patent protection period.

Company intangible assets such as goodwill have indefinite lives and as a result need to be evaluated at least annually, or more frequently, if impairment indicators arise. In the Company’s review, the Company determines the fair value of the reporting unit using market indicators and discounted cash flow modeling. The Company compares the fair value to the net book value of the reporting unit. An impairment loss is recognized when the fair value is less than the related net book value, and an impairment expense is recorded in the amount of the difference. Forecasts of future cash flows are judgments based on the Company’s experience and knowledge of the Company’s operations and the industries in which the Company operates. These forecasts could be significantly affected by future changes in market conditions, the economic environment, including inflation, and the purchasing decisions of the Company’s customers. No indicators warranting reevaluation arose during the three months ended September 30, 2014.

California Ethanol Producer Incentive Program.  The Company is eligible to participate in the California Ethanol Producer Incentive Program (“CEPIP”). Under the CEPIP an eligible California ethanol facility may receive up to $3 million in cash per plant per year of operations through 2013 when current production corn crush spreads, measured as the difference between specified ethanol and corn index prices, drop below $0.55 per gallon.  The California Energy Commission determines on an annual basis the funding allocated to the program.  No funds were allocated to this program during the government’s 2012 fiscal year.  For any month in which a payment is made by the CEPIP, the Company may be required to reimburse the funds within the subsequent five years from each payment date, if the corn crush spreads exceed $1.00 per gallon. Since these funds are provided to subsidize current production costs and encourage eligible facilities to either continue production or start up production in low margin environments, the Company records the proceeds, if any, as a credit to cost of goods sold. With respect to CEPIP payments received and applied as reductions to cost of goods sold, the Company recorded none for the three and nine months ended September 30, 2014 and 2013, respectively. The strength of the crush spread resulted in the accrual and obligation to repay CEPIP funding in the amount of $1.8 million, the entire remaining amount of funds received from the program. As of September 30, 2014 and December 31, 2013, the Company carried an obligation of $1.1 million and $0.1 million. As a result of the current accrual, there are no further contingent liabilities related to this program.

Basic and Diluted Net Income (Loss) per Share.  Basic income (loss) per share is computed by dividing income or loss attributable to common shareholders by the weighted average number of common shares outstanding for the period.  Diluted income (loss) per share reflects the dilution of common stock equivalents such as options, convertible preferred stock, debt and warrants to the extent the impact is dilutive.  As the Company incurred net income for the three and nine months ended September 30, 2014, potentially dilutive securities have been included in the diluted net income per share computations and any potentially anti-dilutive shares have been excluded and are shown below. As the Company incurred net loss for the three and nine months ended September 30, 2013, potentially dilutive securities have been excluded from the diluted net loss per share computations as their effect would be anti-dilutive.

The following table reconciles the number of shares utilized in the net income (loss) per share calculations for three and nine months ended September 30, 2014 and 2013:

	Three months ended Level 1					Nine months ended
		September 30, 2014		September 30, 2013			September 30, 2014		September 30, 2013
		(In thousands, except per share amounts					(In thousands, except per share amounts
Net income (loss)	$	464	$	(8,289	)	$	10,873	$	(27,695	)
Shares:
Weighted average shares outstanding—basic		20,555		19,390			20,284		18,863
Weighted average dilutive share equivalents from preferred shares		217		-			231		-
Weighted average dilutive share equivalents from stock options		460		-			242		-
Weighted average dilutive share equivalents from common warrants		244		-			189		-
Weighted average shares outstanding—diluted		21,476		19,390			20,946		18,863
Earnings (loss) per share—basic	$	0.02	$	(0.43	)	$	0.54	$	(1.47	)
Earnings (loss) per share—diluted	$	0.02	$	(0.43	)	$	0.52	$	(1.47	)

The following table shows the number of potentially dilutive shares excluded from the diluted net income (loss) per share calculation as of September 30, 2014 and September 30, 2013:

	As of
	September 30, 2014		September 30, 2013
Series B preferred		-		3,021
Common stock options and warrants		30		1,531
Convertible promissory note		-		18
Total number of potentially dilutive shares excluded from the basic and diluted net income (loss) per share calculation		30		4,570

Comprehensive Income. ASC 220 Comprehensive Income requires that an enterprise report, by major components and as a single total, the change in its net assets from non-owner sources. The Company’s other comprehensive income and accumulated other comprehensive income consists solely of cumulative currency translation adjustments resulting from the translation of the financial statements of its foreign subsidiaries. The investment in these subsidiaries is considered indefinitely invested overseas, and as a result, deferred income taxes are not recorded for the currency translation adjustments.

Foreign Currency Translation/Transactions. Assets and liabilities of the Company’s non-U.S. subsidiaries that operate in a local currency environment, where that local currency is the functional currency, are translated into U.S. dollars at exchange rates in effect at the balance sheet date; with the resulting translation adjustments directly recorded to a separate component of accumulated other comprehensive income. Income and expense accounts are translated at average exchange rates during the year. Gains and losses from foreign currency transactions are recorded in other income.

Operating Segments. Operating segments are defined as components of an enterprise about which separate financial information is available that is evaluated regularly by the chief operating decision maker, or decision-making group, in deciding how to allocate resources and in assessing performance. Aemetis recognizes two reportable geographic segments: “North America” and “India.”

The “North America” operating segment includes the Company’s 55 million gallon per year nameplate capacity ethanol plant in Keyes, California and the research facilities in College Park, Maryland.

The “India” operating segment encompasses the Company’s 50 million gallon per year nameplate capacity  biodiesel plant in Kakinada, India, the administrative offices in Hyderabad, India, and the holding companies in Nevada and Mauritius.

Fair Value of Financial Instruments. The Company’s financial instruments include cash and cash equivalents, accounts receivable, and accounts payable, other current liabilities, mandatorily redeemable Series B preferred stock, warrant liability and debt. The fair value of current financial instruments was estimated to approximate carrying value due to the short term nature of these instruments. The carrying amount of debt obligations, including discount issuance costs, held by the senior lender, subordinated debt and the seller note payable, at September 30, 2014 amounted to an aggregate of approximately $64.6 million in outstanding obligations. The debts were determined to have an estimated fair value of $62.0 million based on interest rates for comparable debt.  The Company’s debt was valued using inputs from independent consultants evaluating external market inputs and internal financings to determine appropriate discount rates to determine fair value.  It was not practicable to determine the fair market value of the Company’s remaining debt obligations due to the lack of availability of comparable credit facilities and the related party nature of the financial arrangements.  The warrant liability fair value was estimated using the Black-Scholes valuation pricing model at the end of each reporting period.

Share-Based Compensation. The Company recognizes share based compensation in accordance with ASC 718 Stock Compensation requiring the Company to recognize expense related to the estimated fair value of the Company’s share-based compensation awards at the time the awards are granted adjusted to reflect only those shares that are expected to vest. To estimate the discount for lack of marketability on restricted stock issued, the Company uses the Black-Scholes valuation pricing model, which assists in deriving the implied price of put options using the put-call parity principle.  The price of the put option divided by the market price quoted on the NASDAQ Global Market implies the discount for lack of marketability in valuing issued shares to consultants, debt holders, employees or affiliated investors.

Warrant liability: The Company adopted guidance related to distinguishing liabilities from equity for certain warrants which contain a conditional obligation to repurchase feature. The Company estimates the fair value of future liability on warrants using the Black-Scholes pricing model. Assumptions within the pricing model include: 1) the risk-free interest rate, which comes from the U.S. Treasury yield curve for periods within the contractual life of the warrant 2) the expected life of the warrants is assumed to be the contractual life of the warrants, and, 3) the volatility is estimated based on an average of the historical volatilities.

The Company computes the fair value of the warrant liability at each reporting period and the change in the fair value is recorded through earnings. The key component in the value of the warrant liability is the Company's stock price, which is subject to significant fluctuation and is not under the Company's control. The resulting effect on the Company's net income (loss) is therefore subject to significant fluctuation and will continue to be so until the warrants are exercised, amended or expired. Assuming all other fair value inputs remain constant, the Company will record non-cash expense when the stock price increases and non-cash income when the stock price decreases.

Long - Lived Assets. The Company evaluates the recoverability of long-lived assets with finite lives in accordance with ASC Subtopic 360-10-35 Property Plant and Equipment –Subsequent Measurements, which requires recognition of impairment of long-lived assets whenever events or changes in circumstances indicate that the carrying amount of an asset may not be recoverable. When events or changes in circumstances indicate that the carrying amount of an asset may not be recoverable, based on estimated undiscounted cash flows, the impairment loss is measured as the difference between the carrying amount of the assets and its estimated fair value.

Commitments and Contingencies. The Company records and/or discloses commitments and contingencies in accordance with ASC 450 Contingencies.  ASC 450 applies to an existing condition, situation, or set of circumstances involving uncertainty as to possible loss that will ultimately be resolved when one or more future events occur or fail to occur.

Convertible Instruments.  The Company evaluates the impacts of convertible instruments based on the underlying conversion features.  Convertible Instruments are evaluated for treatment as derivatives that could be bifurcated and recorded separately.  Any beneficial conversion feature is recorded based on the intrinsic value difference at the commitment date.

Debt Modification Accounting. The Company evaluates amendments to its debt in accordance with ASC 540-50 Debt – Modification and Extinguishments for modification and extinguishment accounting.  This evaluation includes comparing the net present value of cash flows of the new debt to the old debt to determine if changes greater than 10 percent occurred.  In instances where the net present value of future cash flows changes more than 10 percent, the Company applies extinguishment accounting and determines the fair value of its debt based on factors available to the Company. See Note 5 for discussion on debt extinguished during the current period.

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1. Nature of Activities and Summary of Significant Accounting Policies (Details 1)	Sep. 30, 2014	Sep. 30, 2013
Accounting Policies [Abstract]
Series B preferred	0	3,021
Common stock options and warrants	30	1,531
Convertible promissory note	0	18
Total number of potentially dilutive shares excluded from the basic and diluted net income (loss) per share calculation	30	4,570

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1. Nature of Activities and Summary of Significant Accounting Policies (Tables)

9 Months Ended

Sep. 30, 2014

Proceeds from sale of land

Reconciles the number of shares utilized in the net income (loss) per share

	Three months ended Level 1					Nine months ended
		September 30, 2014		September 30, 2013			September 30, 2014		September 30, 2013
		(In thousands, except per share amounts					(In thousands, except per share amounts
Net income (loss)	$	464	$	(8,289	)	$	10,873	$	(27,695	)
Shares:
Weighted average shares outstanding—basic		20,555		19,390			20,284		18,863
Weighted average dilutive share equivalents from preferred shares		217		-			231		-
Weighted average dilutive share equivalents from stock options		460		-			242		-
Weighted average dilutive share equivalents from common warrants		244		-			189		-
Weighted average shares outstanding—diluted		21,476		19,390			20,946		18,863
Earnings (loss) per share—basic	$	0.02	$	(0.43	)	$	0.54	$	(1.47	)
Earnings (loss) per share—diluted	$	0.02	$	(0.43	)	$	0.52	$	(1.47	)

Schedule of dilutive securities

	As of
	September 30, 2014		September 30, 2013
Series B preferred		-		3,021
Common stock options and warrants		30		1,531
Convertible promissory note		-		18
Total number of potentially dilutive shares excluded from the basic and diluted net income (loss) per share calculation		30		4,570

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1. Nature of Activities and Summary of Significant Accounting Policies (Details Narrative) (USD $) In Thousands, unless otherwise specified	Sep. 30, 2014
Disclosure1.NotesOfActivitiesAndSummaryOfSignificantAccountingPoliciesDetailsAbstract
Carrying amount of debt obligations	$ 64,600
Debt fair value	$ 62,000

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3. Property, Plant and Equipment (Tables)

9 Months Ended

Sep. 30, 2014

Statement of Operations Data

Schedule of Property, plant and equipment

		September 30, 2014			December 31, 2013
Land	$	2,765		$	2,765
Plant and Buildings		82,570			82,355
Furniture and fixtures		488			558
Machinery and equipment		3,989			2,076
Construction in progress		53			539
Total gross property, plant & equipment		89,865			88,293
Less accumulated depreciation		(12,817	)		(9,365	)
Total net property, plant & equipment	$	77,048		$	78,928

Depreciation of property, plant, and equipment

	Years
Plant and Buildings		20 - 30
Machinery & Equipment		5 - 7
Furniture & Fixtures		3 - 5

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2. Inventory

9 Months Ended

Sep. 30, 2014

Inventory Disclosure [Abstract]

2. Inventory

Inventory consists of the following:

		September 30, 2014		December 31, 2013
Raw materials	$	3,087	$	597
Work-in-progress		1,457		1,724
Finished goods		634		1,777
Total inventory	$	5,178	$	4,098

As of September 30, 2014 and December 31, 2013, the Company recognized a lower of cost or market reserve of $7 thousand and none, respectively, related to inventory.

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CONSOLIDATED CONDENSED BALANCE SHEET (Unaudited) (Parenthetical) (USD $) In Thousands, except Share data, unless otherwise specified	Sep. 30, 2014	Dec. 31, 2013
Statement of Financial Position [Abstract]
Intangible assets, accumulated amortization	$ 244	$ 184
Series B Preferred stock, par value	$ 0.001	$ 0.001
Series B Preferred stock, authorized	7,235	7,235
Series B Preferred stock, shares issued	2,032	2,401
Series B Preferred stock, shares outstanding	2,032	2,401
Common stock, par value	$ 0.001	$ 0.001
Common stock, shares authorized	40,000	40,000
Common stock, shares issued	20,610	19,974
Common stock, shares outstanding	20,610	19,974

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12. Segment Information

9 Months Ended

Sep. 30, 2014

Segment Reporting [Abstract]

12. Segment Information

Aemetis recognizes two reportable geographic segments: “North America” and “India .” The “North America” operating segment includes the Company’s owned ethanol plant in Keyes, California and its technology lab in College Park, Maryland. As the Company’s technology becomes commercialized, this business segment will include its domestic commercial application of second generation ethanol technology, its plant construction projects and any acquisitions of ethanol or ethanol related technology facilities in North America.

The “India” operating segment includes the Company’s 50 million gallon per year nameplate capacity  biodiesel manufacturing plant in Kakinada, the administrative offices in Hyderabad, India, and the holding companies in Nevada and Mauritius. The Company’s  biodiesel is marketed and sold primarily to customers in India through brokers and by the Company directly.

Summarized financial information by reportable segment for the three and nine months ended September 30, 2014 and 2013 follows:

	For the three months ended September 30,				For the nine months ended September 30,
	2014		2013		2014		2013
Revenues
North America	$	42,886	$	49,172	$	155,966	$	92,883
India		5,462		7,516		10,242		30,578
Total revenues	$	48,348	$	56,688	$	166,208	$	123,461
Cost of goods sold
North America	$	35,632	$	46,709	$	121,754	$	89,851
India		5,001		6,943		9,762		26,576
Total cost of goods sold	$	40,633	$	53,652	$	131,516	$	116,427
Gross profit/(loss)
North America	$	7,254	$	2,463	$	34,212	$	3,032
India		461		573		480		4,002
Total gross profit	$	7,715	$	3,036	$	34,692	$	7,034

India. During the three  months ended September 30, 2014, four customers accounted for approximately 86% of the consolidated India segment revenues.  During the three months ended September 30, 2013, five customers accounted for approximately 70% of the consolidated India segment revenues.

North America: During the three months ended September 30, 2014, the Company’s revenues from ethanol, WDG, and corn oil were made pursuant to the Grain Procurement and Working Capital Agreement established between the Company and J.D. Heiskell.  Sales of ethanol and WDG to J.D. Heiskell accounted for 97% of the Company’s North America segment revenues for the three months ended September 30, 2014.

During the three months ended September 30, 2013, Company’s revenues from ethanol, WDG, and corn oil were made pursuant to the Grain Procurement and Working Capital Agreement established between the Company and J.D. Heiskell.  Sales of ethanol and WDG to J.D. Heiskell accounted for 98% of the Company’s North America segment revenues for the three months ended September 30, 2013.

Total assets consist of the following:

	As of		As of
	September 30,		December 31,
	2014		2013
North America	$	76,981	$	83,183
India		18,124		13,959
Total Assets	$	95,105	$	97,142

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Document and Entity Information	9 Months Ended
	Sep. 30, 2014	Nov. 05, 2014
Document And Entity Information
Entity Registrant Name	AEMETIS, INC.
Entity Central Index Key	0000738214
Document Type	10-Q
Document Period End Date	Sep. 30, 2014
Amendment Flag	false
Current Fiscal Year End Date	--12-31
Is Entity a Well-known Seasoned Issuer?	No
Is Entity a Voluntary Filer?	No
Is Entity's Reporting Status Current?	Yes
Entity Filer Category	Smaller Reporting Company
Entity Common Stock, Shares Outstanding		20,612,110
Document Fiscal Period Focus	Q3
Document Fiscal Year Focus	2014

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13. Related Party Transactions

9 Months Ended

Sep. 30, 2014

Related Party Transactions [Abstract]

13. Related Party Transactions

The Company owes Eric McAfee and McAfee Capital, owned by Eric McAfee, $0.4 million and $1.0 million respectively, for salary and expense reimbursements, which are included in accrued expenses and accounts payable on the balance sheet as of September 30, 2014 and December 31, 2013.  For the three months ended September 30, 2014 and 2013, the Company expensed $23 thousand and $40 thousand  respectively, to reimburse actual expenses incurred by McAfee Capital and related entities.  For the nine months ended September 30, 2014 and 2013, the Company expensed $142 thousand and $110 thousand, respectively, to reimburse actual expenses incurred by McAfee Capital and related entities.

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CONSOLIDATED CONDENSED STATEMENTS OF OPERATIONS AND COMPREHENSIVE INCOME / (LOSS) (Unaudited) (USD $) In Thousands, except Share data, unless otherwise specified	3 Months Ended				9 Months Ended
	Sep. 30, 2014		Sep. 30, 2013		Sep. 30, 2014		Sep. 30, 2013
Income Statement [Abstract]
Revenues	$ 48,348		$ 56,688		$ 166,208		$ 123,461
Cost of goods sold	40,633		53,652		131,516		116,427
Gross profit	7,715		3,036		34,692		7,034
Research and development expenses	101		115		342		468
Selling, general and administrative expenses	2,972		3,879		9,263		12,078
Operating income/(loss)	4,642		(958)		25,087		(5,512)
Other income/(expense)
Interest rate expense	(2,287)		(2,933)		(7,737)		(8,516)
Amortization expense	(741)		(2,020)		(5,361)		(10,366)
Loss on debt extinguishment	(1,231)		(2,521)		(1,346)		(3,709)
Gain (loss) on sale/disposal of assets	0		108		(119)		282
Other income	81		35		355		132
Income (loss) before income taxes	464		(8,289)		10,879		(27,689)
Income tax expense	0		0		(6)		(6)
Net income/(loss)	464		(8,289)		10,873		(27,695)
Other comprehensive income
Foreign currency translation adjustment	(98)		(275)		10		(675)
Comprehensive income (loss)	$ 366		$ (8,564)		$ 10,883		$ (28,370)
Net income(loss) per common share
Basic	$ 0.02	[1]	$ (0.43)	[1]	$ 0.54	[1]	$ (1.47)	[1]
Diluted	$ 0.02	[1]	$ (0.43)	[1]	$ 0.52	[1]	$ (1.47)	[1]
Weighted average shares outstanding
Basic	20,555	[1]	19,390	[1]	20,284	[1]	18,863	[1]
Diluted	21,476	[1]	19,390	[1]	20,946	[1]	18,863	[1]

[1] The Earnings per share and Weighted average shares outstanding for all periods presented reflect the one-for-ten reverse split, which took effect May 15, 2014.

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7. Outstanding Warrants

9 Months Ended

Sep. 30, 2014

Text Block [Abstract]

7. Outstanding Warrants

During the three months ended September 30, 2014, the Company issued 118 thousand common stock warrants. During the nine months ended September 30, 2014, the Company issued 148 thousand common stock warrants, which have the potential to enhance returns for accredited investors who entered into additional Notes and Warrant Purchase Agreements.

For the three and nine months ended September 30, 2014, Note investors and employees exercised 131 thousand and 215 thousand warrant shares at the weighted average exercise price of $0.09 and $1.31 per share respectively.

A summary of warrant activity as of September 30, 2014 follows:

	Warrants Outstanding & Exercisable			Weighted - Average Exercise Price	Average Remaining Term in Years
Outstanding December 31, 2013	470		$	3.40	4.85
Expired	-			-
Granted	30			0.01
Exercised	(30	)		0.01
Outstanding March 31, 2014	470		$	3.41	4.60
Expired	(47	)		4.98
Granted	-			-
Exercised	(54	)		4.96
Outstanding June 30, 2014	369		$	2.99	3.12
Expired	(1	)		4.66
Granted	118			0.01
Exercised	(131	)		0.09
Outstanding September 30, 2014	355		$	3.06	2.93

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6. Commitments and Contingencies

9 Months Ended

Sep. 30, 2014

Commitments and Contingencies Disclosure [Abstract]

6. Commitments and Contingencies

Operating Leases

The Company, through its subsidiaries, has non-cancelable operating leases for office space in Cupertino and India. Future minimum operating lease payments as of September 30, 2014 are as follows:

Twelve months ended September 30,		Future Rent Payments
2015	$	169

For the three months ended September 30, 2014 and 2013, the Company recognized lease and rent expense of $108 thousand and $105 thousand respectively, under existing operating leases. For the nine months ended September 30, 2014 and 2013, the Company recognized lease and rent expense of $320 thousand and $316 thousand respectively, under existing operating leases. 

Legal Proceedings

On March 10, 2011, one of our subsidiaries, Universal Biofuels Pvt. Ltd. (“UBPL”), received a demand notice from the State Bank of India under the Agreement of Loan for Overall Limit dated as of June 26, 2008. The notice informs UBPL that an event of default has occurred for failure to make an installment payment on the loan commencing June 2009 and demands repayment of the entire outstanding indebtedness of 19.60 crore rupees (approximately $3.2 million) together with all accrued interest thereon and any applicable fees and expenses. Upon the occurrence and during the continuance of an Event of Default, interest accrues at the default interest rate of 2% above the State Bank of India Advance Rate. The default period began on July 1, 2009 when the principal payment was deemed past due; and we have accrued interest at the default rate since the beginning of the default period. In addition, since the bank demanded payment of the balance, we have classified the entire loan amount as current. The State Bank of India has filed a legal case before the Debt Recovery Tribunal (“DRT”), Hyderabad, for recovery of approximately $5.0 million against the Company and also impleaded Andhra Pradesh Industrial Infrastructure Corporation (“APIIC”) to expedite the process of registration of the factory land for which counter reply is yet to be filed by APIIC. UBPL asserts that the State Bank of India did not provide the committed funding of the working capital loan and only funded a portion of the term loan, thus requiring the Company to enter into a working capital facility at unfavorable terms which served to hinder the business from developing at the planned rate. The State Bank of India has additionally required the personal guarantee of our Executive Officer and the registration of the land underlying the factory as conditions prior to restructure of the loan. Payments have recently been made against the facility; however, the State Bank of India has rejected these payments as a good faith effort. In January 2014, the Company made payment of $162 thousand (1 crore rupees) against principal on the facility which was accepted by the State Bank of India. UBPL filed for a stay against further collection efforts pending the development of sufficient business in a domestic or international market that would allow UBPL to make meaningful repayments against the facility. In May 2014, the Company obtained an interim stay subject to payments of 1 crore rupees (approximately $0.2 million) each by May 15, 2014 and June 15, 2014. In the event that the Company is unable to prevail in the aforementioned legal case, DRT may pass a decree for recovery of the amount due, which could include seizing company property for recovery of amounts due.

On August 4, 2013, GS Cleantech Corporation, a subsidiary of Greenshift Corporation (“Greenshift”), filed a complaint in the United States District for the Eastern District of California – Fresno Division against the Company and its subsidiary, AAFK. The case was transferred to the Southern District of Indiana and joined as tag-along defendants to a pending Multidistrict Litigation with over a dozen original defendants. The complaint alleges infringement of patent rights assigned to Greenshift that pertain to certain corn oil extraction processes that the Company employs and seeks royalties, damages, treble damages, and attorney’s fees, along with injunctions precluding the Company from infringing its patent rights. The corn oil extraction process we use is licensed to us by Valicor Separation Technologies LLC, formerly called Solution Recovery Services LLC (“SRS”). The process provider has no obligations to indemnify us. On September 12, 2013, the Company, along with its subsidiary, filed its answer and counterclaims. In response to a motion for summary judgment filed by the original defendants, on October 23, 2014, the Court ruled that all the claims of all the patents at issue in the case are invalid. We expect Greenshift will appeal; however, the likelihood of Greenshift succeeding on appeal is small since the Court’s findings included summary judgments on several grounds for each allegedly infringed patent. Damages being sought in this litigation are based on a reasonable royalty to or lost profits of Greenshift. Because of its recent summary judgment findings, it is highly unlikely the court would find the case exceptional and eligible for an award to Greenshift of attorney’s fees. If Greenshift successfully appeals the District Court’s findings of invalidity, damages may be $1 million or more. The Company believes the claims to be without merit and is vigorously defending itself. If we are not successful in our defense, we would be liable for damages and at least our own attorneys’ fees. The Company’s counterclaims include patent invalidity due to obviousness (and the Court has summarily ruled in favor of the original defendants’ identical counterclaim), non- infringement, and inequitable conduct. We are not currently able to predict the outcome of this litigation against the Company with any degree of certainty.

On August 21, 2012, UBS Securities LLC (“UBS”) filed a complaint in the United States District Court for the Southern District of New York against the Company for damages based on a breach of contract theory in connection with the Cilion acquisition transaction (“UBS Federal Action”). UBS filed a motion for, and the District Court approved, a judgment against the Company in the liquidated amount of $2.3 million which has been accrued by the Company. UBS filed post-judgment discovery requests and pursued the enforcement of the judgment. Subsequently, on March 13, 2014, UBS also filed a complaint against one of our subsidiaries, Aemetis Advanced Fuels Keyes, Inc. in the state court in the State of New York, alleging breach of the same contract involved in the UBS Federal Action. The Company and AAFK entered into a settlement agreement with UBS in September 2014 whereby the Company paid $1.0 million in September 2014 and will make monthly payments of $0.1 million to UBS until the liquidated amount is fully paid.

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2. Inventory (Tables)

9 Months Ended

Sep. 30, 2014

Schedule of Notes Payable

Schedule of Inventory

		September 30, 2014		December 31, 2013
Raw materials	$	3,087	$	597
Work-in-progress		1,457		1,724
Finished goods		634		1,777
Total inventory	$	5,178	$	4,098

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14. Subsequent Events

9 Months Ended

Sep. 30, 2014

Subsequent Events [Abstract]

14. Subsequent Events

Construction of Carbon Dioxide Liquification Plant

On October 15, 2014, Aemetis Advanced Products Keyes, Inc., a wholly-owned subsidiary of Aemetis, Inc., entered into an agreement with Denmark-based Union Engineering to design and construct a 300 ton per day (about 220 million pound per year) Liquid CO2 facility.  The facility will liquify carbon dioxide at the Aemetis ethanol biorefinery in Keyes, California at an expected construction cost of about $15 million.  The Liquid CO2 facility will allow us to convert a by-product of the ethanol process into quality liquid carbon dioxide for customers in the food processing, beverage, dry ice and construction sectors.

Third Eye Capital Amendment

On November 7, 2014, Third Eye Capital agreed to Amendment No. 8 to the Note Purchase Agreement to extend a line of credit in the amount of $6.0 million available for advance to Aemetis, such advance to be added to the outstanding principal balance of the existing notes under the Note Purchase Agreement. In addition, Third Eye Capital agreed to give Aemetis the right to extend the maturity date of the notes to January 1, 2016 upon notice and payment of a 3% extension fee.  Pursuant to the terms of Amendment No.8, Aemetis agreed to a covenant to complete an equity offering of its preferred stock for net proceeds of not less than $20 million with all of such net proceeds to be used to repay the principal outstanding under the Note Purchase Agreement in accordance with the priorities set forth there in.

As consideration for Amendment No.8, the unconditional personal Guaranty from Chairman of the Company, the guaranties from Company parties and McAfee Capital, LLC owned by Mr. Eric McAfee were all reaffirmed. The Company also agreed to pay $0.2 million in consideration to Mr. McAfee and McAfee Capital in exchange for their willingness to provide the guaranties. In addition, Company agreed to an amendment fee to Third Eye Capital in the amount of $0.3 million which will be paid from the proceeds of the advance.

The foregoing description of Amendment No. 8 is only a summary and does not purport to be complete and is qualified in its entirety by reference to the full text of Amendment No. 8, which is filed as Exhibit 10.1 hereto, and is incorporated, by reference herein.

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10. Stock Based Compensation

9 Months Ended

Sep. 30, 2014

Stockholders' equity (deficit):

10. Stock Based Compensation

Common Stock Reserved for Issuance

Aemetis authorized the issuance of 1.2 million shares of common stock under its the Zymetis 2006 Stock Plan and Amended and Restated 2007 Stock Plan (together, the “Company Stock Plans”), which includes both incentive and non-statutory stock options. These options generally expire five years from the date of grant and are exercisable at any time after the date of the grant, subject to vesting.

The following is a summary of options granted under the employee stock plans:

Nine months ended	Shares Available for Grant			Number of Shares Outstanding			Weighted-Average Exercise Price
Balance as of December 31, 2013		74			913		$	4.90
Authorized		100			—			—
Granted		(148	)		148			4.20
Exercised		—			(155	)		1.66
Forfeited/expired		70			(70	)		2.82
Balance as of September 30, 2014		97			835		$	5.61

For the three months ended September 30, 2014 and 2013 the Company recorded option expenses in the amount of $157 thousand and $144 thousand for each period. Included in the three months ended September 30, 2014 and 2013 option expenses were $6 thousand and $1 thousand, respectively, of outstanding consultant options subject to periodic fair value re-measurement under ASC 505-50-30 Equity Based Payments to Non Employees.

For the nine months ended September 30, 2014 and 2013 the Company recorded option expenses in the amount of $447 thousand and $388 thousand for each period. Included in the nine months ended September 30, 2014 and 2013 option expenses were $17 thousand and $10 thousand, respectively, of outstanding consultant options subject to periodic fair value re-measurement under ASC 505-50-30 Equity Based Payments to Non Employees.

The valuation using the Black-Scholes valuation pricing model is based upon the current market value of the Company’s common stock and other current assumptions, including the expected term (contractual term for consultant options). The Company records the expense related to consultant options using the accelerated expense pattern prescribed in ASC 505-50-30.

Valuation and Expense Information. The weighted-average fair value calculations for consultant and employee options are based on the following weighted average assumptions:

		As of September 30
		2014			2013
Dividend-yield		0	%		0	%
Risk-free interest rate		0. 02 - 0.83	%		0.18 - 0.42	%
Expected volatility		56.35 - 91.33	%		74.83 - 142.90	%
Expected life (years)		0.3 - 3.0			0.5 - 3.0
Market value of common stock	$	8.68		$	3.20

As of September 30, 2014, the Company had $849 thousand and $16 thousand of total unrecognized compensation expense for employees and non-employees that the Company will amortize over the 3.8 weighted remaining term of the option agreements.

Non-Plan Stock Options

In November 2013 the Company issued 98 thousand stock options to board members and consultants outside of the Company Stock Option Plans. As of September 30, 2014, 82 thousand options vested and 7 thousand unvested at remaining contractual term of 3.1 years. 9 thousand options were exercised at a weighted average exercise price of $5.50 and 89 thousand options were outstanding as of September 30,2014.

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8. Fair Value of Warrants

9 Months Ended

Sep. 30, 2014

Notes to Financial Statements

8. Fair Value of Warrants

The following tables summarize the assumptions used in computing the fair value of liability warrants subject to fair value accounting at the date of issue during the three months ended September 30, 2014:

Expected dividend yield		0	%
Risk-free interest rate		1.07	%
Expected volatility		81.02% - 92.51	%
Expected Life (years)		2.7 - 3.3
Exercise price	$	0.01
Company stock price	$	8.68

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9. Fair Value Measurements

9 Months Ended

Sep. 30, 2014

Fair Value Disclosures [Abstract]

9. Fair Value Measurements

The Company complies with the fair value measurements and disclosures standard which defines fair value, establishes a framework for measuring fair value, and expands disclosure for those assets and liabilities carried on the balance sheet on a fair value basis.

The Company's balance sheet contains derivative financial instruments that are recorded at fair value on a recurring basis. Fair value measurements and disclosures require that assets and liabilities carried at fair value be classified and disclosed according to the process for determining fair value. There are three levels of determining fair value.

Level 1 uses quoted market prices in active markets for identical assets or liabilities.

Level 2 uses observable market based inputs or unobservable inputs that are corroborated by market data.

Level 3 uses unobservable inputs that are not corroborated by market data.

A description of the valuation methodologies used for instruments measured at fair value, as well as the general classification of such instruments pursuant to the valuation hierarchy, is set forth below.

Warrant liability: The warrant liability consists of stock warrants issued by the Company that contain conditional obligation to repurchase feature. In accordance with accounting for warrants as liabilities, the Company calculated the fair value of warrants under Level 3 using the assumptions described in “Fair Value of Warrants”. Realized and unrealized gains and losses related to the change in fair value of the warrant liability are included in other income on the Statement of Operations.

The following table summarizes financial liabilities measured at fair value on a recurring basis as of September 30, 2014, segregated by the level of the valuation inputs within the fair value hierarchy utilized to measure fair value:

	Total		Level 1		Level 2		Level 3
Warrant liability	$	162	$	-	$	-	$	162

The following table reflects the activity for liabilities measured at fair value using Level 3 inputs as of September 30, 2014:

Balance as of December 31, 2013	$	60
Issuances of warrant liabilities		-
Exercise of warrant liabilities		-
Related change in fair value		48
Balance as of March 31, 2014	$	108
Issuances of warrant liabilities		-
Exercise of warrant liabilities		-
Related change in fair value		71
Balance as of June 30, 2014	$	179
Issuances of warrant liabilities		-
Exercise of warrant liabilities		-
Related change in fair value		(17	)
Balance as of September 30, 2014	$	162

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11. Agreements

9 Months Ended

Sep. 30, 2014

Agreements

11. Agreements

Working Capital Arrangement. In May 2013 we extended the annual Grain Procurement and Working Capital Agreement with J.D. Heiskell that has been in place since March 2011.  Pursuant to the agreement we agreed to procure whole yellow corn and grain sorghum (also called “milo”) from J.D. Heiskell. The Company has the ability to obtain grain from other sources subject to certain conditions, however, in the past all of our grain purchases have been from Heiskell. Title and risk of loss of the corn pass to the Company when the corn is deposited into the weigh bin. The term of the Agreement expires on December 31, 2014 and is automatically renewed for additional one-year terms. Heiskell further agrees to sell all ethanol to Kinergy Marketing or other marketing purchaser designated by the Company and all WDG and condensed distillers solubles  to A.L. Gilbert. Our relationships with J.D. Heiskell, Kinergy Marketing, and A.L. Gilbert are well established and the Company believes that the relationships are beneficial to all parties involved in utilizing the distribution logistics, reaching out to widespread customer base, managing inventory, and building working capital relationships. Revenue is recognized upon delivery of ethanol to J. D. Heiskell as revenue recognition criteria has been met and any performance required of the Company subsequent to the sale to J.D. Heiskell is inconsequential. These agreements are ordinary purchase and sale agency agreements for an ethanol plant.

The J.D. Heiskell sales activity associated with the Purchasing Agreement, Grain Procurement and Working Capital

Agreements during the three and nine months ended September 30, 2014 were as follows:

		Three months ended September 30,				Nine months ended September 30,
		2014		2013		2014		2013
Ethanol sales	$	33,641	$	36,936	$	121,388	$	69,676
Wet distiller's grains sales		8,175		8,621		30,970		16,605
Corn oil sales		1,018		925		3,263		1,555
Corn purchases		27,616		31,381		94,563		62,970
Milo Purchases		-		6,777		-		11,425
Accounts receivable		-		928		-		928
Accounts payable		1,904		2,189		1,904		2,189

Ethanol and Wet Distillers Grains Marketing Arrangement. The Company entered into an Ethanol Marketing Agreement with Kinergy Marketing and a Wet Distillers Grains marketing agreement with A. L Gilbert. Under the terms of the agreements, subject to certain conditions, the agreements mature on August 31, 2015 with automatic one-year renewals thereafter.  For the three months ended September 30, 2014 and 2013, the Company expensed marketing costs of $0.7 million for each period, respectively, under the terms of both ethanol and wet distiller’s grains agreements. For the nine months ended September 30, 2014 and 2013, the Company expensed marketing costs of $2.3 million and $1.3 million, respectively.

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1. Nature of Activities and Summary of Significant Accounting Policies (Details) (USD $) In Thousands, except Share data, unless otherwise specified	3 Months Ended				9 Months Ended
	Sep. 30, 2014		Sep. 30, 2013		Sep. 30, 2014		Sep. 30, 2013
Numerator:
Net income (loss)	$ 464		$ (8,289)		$ 10,873		$ (27,695)
Shares (Denominator):
Weighted average shares outstanding-basic	20,555		19,390		20,284		18,863
Weighted average dilutive share equivalents from preferred shares	217		0		231		0
Weighted average dilutive share equivalents from stock options	460		0		242		0
Weighted average dilutive share equivalents from common warrants	244		0		189		0
Weighted average shares outstanding-diluted	21,476	[1]	19,390	[1]	20,946	[1]	18,863	[1]
Earnings (loss) per share-basic	$ 0.02	[1]	$ (0.43)	[1]	$ 0.54	[1]	$ (1.47)	[1]
Earnings (loss) per share-diluted	$ 0.02	[1]	$ (0.43)	[1]	$ 0.52	[1]	$ (1.47)	[1]

[1] The Earnings per share and Weighted average shares outstanding for all periods presented reflect the one-for-ten reverse split, which took effect May 15, 2014.

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9. Fair Value Measurements (Details 1) (USD $) In Thousands, unless otherwise specified	3 Months Ended
	Sep. 30, 2014	Jun. 30, 2014	Mar. 31, 2014
Fair Value Measurements Details 1
Beginning, Balance	$ 179	$ 108	$ 60
Issuances of warrant liabilities	0	0	0
Exercise of warrant liabilities	0	0	0
Related change in fair value	(17)	71	48
Ending, Balance	$ 162	$ 179	$ 108

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1. Nature of Activities and Summary of Significant Accounting Policies (Policies)

9 Months Ended

Sep. 30, 2014

Proceeds from borrowing under secured debt facilities

Nature of Activities

Nature of Activities. These consolidated financial statements include the accounts of Aemetis, Inc., a Nevada corporation, and its wholly owned subsidiaries (collectively, “Aemetis” or the “Company”):

●   Aemetis Americas, Inc., a Nevada corporation and its subsidiary AE Biofuels, Inc., a Delaware corporation;

●   Biofuels Marketing, Inc., a Delaware corporation;

●   Aemetis International, Inc., a Nevada corporation and its subsidiary International Biofuels, Ltd., a Mauritius corporation and its subsidiary Universal Biofuels Private, Ltd., an India company;

●   Aemetis Technologies, Inc., a Delaware corporation;

●   Aemetis Biochemicals, Inc., a Nevada corporation;

●   Aemetis Biofuels, Inc., a Delaware corporation and its subsidiary Energy Enzymes, Inc., a Delaware corporation;

●   AE Advanced Fuels, Inc., a Delaware corporation and its subsidiaries Aemetis Advanced Fuels Keyes, Inc., a Delaware corporation and Aemetis Facility Keyes, Inc., a Delaware corporation;

●   Aemetis Advanced Fuels, Inc., a Nevada corporation; and,

●   Aemetis Advanced Products Keyes, Inc., a Delaware corporation.

Aemetis is an advanced renewable fuels and biochemicals company focused on the acquisition, development and commercialization of innovative technologies that replace traditional petroleum-based products by the conversion of first generation ethanol and  biodiesel plants into advanced biorefineries.  The Company owns and operates a plant in Keyes, California where the Company manufactures and produces ethanol, wet distillers’ grain (WDG), condensed distillers solubles (CDS) and corn oil and a manufacturing and refining facility in Kakinada, India where the Company manufactures and produces fatty acid methyl ester ( biodiesel), crude and refined glycerin and refined palm oil.  In September 2013, the Company received approval by the US Environmental Protection Agency to produce ethanol using grain sorghum and biogas along with the Keyes plant existing combined heat and power systems to generate higher value D5 Advanced Biofuel Renewable Identification Numbers (RIN’s).  In April 2014, the Company received the International Sustainability and Carbon Certification for the production of  biodiesel at the India plant from certain oils and fats for sale into European markets.  The Company completed the EPA Process for importation of our India biodiesel into the United States. In addition, the Company is continuing  research and development focused on microbial technologies for the commercialization of renewable industrial biofuels and biochemicals.

Basis of Presentation and Consolidation

Basis of Presentation and Consolidation. The consolidated condensed financial statements include the accounts of Aemetis, Inc. and its subsidiaries. All intercompany balances and transactions have been eliminated in consolidation. The accompanying consolidated condensed balance sheet as of September 30, 2014, the consolidated condensed statements of operations and comprehensive income/(loss) for the three and nine months ended September 30, 2014 and 2013, and the consolidated condensed statements of cash flows for the nine months ended September 30, 2014 and 2013 are unaudited. The consolidated condensed balance sheet as of December 31, 2013 was derived from the 2013 audited consolidated financial statements and notes thereto. The consolidated condensed financial statements in this report should be read in conjunction with the 2013 audited consolidated financial statements and notes thereto included in the Company’s annual report on Form 10-K for the year ended December 31, 2013.

The accompanying consolidated condensed financial statements have been prepared in accordance with accounting principles generally accepted in the United States (U.S. GAAP) and pursuant to the rules and regulations of the SEC. Certain information and footnote disclosures normally included in financial statements prepared in accordance with U.S. GAAP have been condensed or omitted pursuant to such rules and regulations.

In the opinion of management, the unaudited interim consolidated condensed financial statements for the three and nine months ended September 30, 2014 and 2013 have been prepared on the same basis as the audited consolidated statements as of December 31, 2013 and reflect all adjustments, consisting primarily of normal recurring adjustments, necessary for the fair presentation of its statement of financial position, results of operations and cash flows. The results of operations for the three and nine months ended September 30, 2014 are not necessarily indicative of the operating results for any subsequent quarter, for the full fiscal year or any future periods.

Reverse Stock Split

 Reverse Stock Split. In April 2014, our board of directors approved, and submitted a proposal to our stockholders for approval of a 1 for 10 reverse split of our common stock (the “Reverse Stock Split”).  The Reverse Stock Split was intended to increase the market price of our common stock to enhance our ability to meet the initial listing requirements of the NASDAQ Global Market and to make our common stock more attractive to a broader range of institutional and other investors.  Our stockholders approved the Reverse Stock Split on May 9, 2014 and we filed a Certificate of Change with the Secretary of State of the State of Nevada to effect the Reverse Stock Split on May 9, 2014.  The Reverse Stock Split became effective with the Financial Industry Regulatory Authority (FINRA) on May 15, 2014. Trading on the NASDAQ Global Market commenced on June 5, 2014.
 

Upon the effectiveness of the Reverse Stock Split, every ten shares of issued and outstanding and authorized Aemetis common stock was automatically combined into one share of common stock with any fractional shares rounded up to the next whole share and without any change in the per share par value.  The Reverse Stock Split reduced the number of outstanding shares of Aemetis common stock from approximately 201.7 million shares to approximately 20.2 million shares.  The authorized shares of Aemetis common stock were also proportionally reduced from 400 million shares to 40 million shares.

Unless otherwise indicated, all share amounts, per share data, share prices, exercise prices and conversion rates set forth in these notes and the accompanying consolidated financial statements have, where applicable, been adjusted to reflect three Reverse Stock Split.

Use of Estimates

Use of Estimates.  The preparation of financial statements in conformity with U.S. GAAP requires management to make estimates and assumptions that affect the reported amounts of assets and liabilities and disclosure of contingent assets and liabilities at the date of the financial statements and revenues and expenses during the reporting period.  To the extent there are material differences between these estimates and actual results, the Company’s consolidated financial statements will be affected.

Revenue recognition

Revenue recognition. The Company recognizes revenue when there is persuasive evidence of an arrangement, delivery has occurred, the price is fixed or determinable and collection is reasonably assured. The Company records revenues based upon the gross amounts billed to its customers. Revenue from nonmonetary transactions, principally in-kind by-products received in exchange for material processing where the by-product is contemplated by contract to provide value, is recognized at the quoted market price of those goods received or by-products.

Cost of Goods Sold

Cost of Goods Sold. Cost of goods sold includes those costs directly associated with the production of revenues, such as raw material, factory overhead and other direct production costs.  During periods of idle plant capacity, costs otherwise charged to cost of goods sold are reclassified to selling, general and administrative expense.

Shipping and Handling Costs

Shipping and Handling Costs. Shipping and handling costs are classified as a component of cost of goods sold in the accompanying consolidated statements of operations.

Reclassifications

Reclassifications. Certain prior quarter amounts were reclassified to conform to current period presentation. These reclassifications had no impact on previously reported net loss or accumulated deficit.

Research and Development

Research and Development. Research and development costs are expensed as incurred, unless they have alternative future uses to the Company.

Cash and Cash Equivalents

Cash and Cash Equivalents. The Company considers all highly liquid investments with an original maturity of three months or less to be cash equivalents. The Company maintains cash balances at various financial institutions domestically and abroad. The Federal Deposit Insurance Corporation (FDIC) insures domestic cash accounts. The Company’s accounts at these institutions may at times exceed federally insured limits. The Company has not experienced any losses in such accounts.

Accounts Receivable

Accounts Receivable.  The Company sells ethanol, wet distiller grains, condensed distillers solubles  and corn oil directly and through third-party marketing arrangements generally without requiring collateral.  The Company sells  biodiesel, glycerin and processed natural oils to a variety of customers and may require advanced payment based on the size and creditworthiness of the customer.  Accounts receivable consist of product sales made to large creditworthy customers. Trade accounts receivable are presented at original invoice amount, net of the allowance for doubtful accounts.

The Company maintains an allowance for doubtful accounts for balances that appear to have specific collection issues. The collection process is based on the age of the invoice and requires attempted contacts with the customer at specified intervals. If, after a specified number of days, the Company has been unsuccessful in its collection efforts, a bad debt allowance is recorded for the balance in question. Delinquent accounts receivable are charged against the allowance for doubtful accounts once a lack of collectability has been determined. The factors considered in reaching this determination are the apparent financial condition of the customer and the Company’s success in contacting and negotiating with the customer. If the financial condition of the Company’s customers were to deteriorate, additional allowances may be required.

Inventories

Inventories. Inventories are stated at the lower of cost, using the first-in and first-out (FIFO) method, or market.

Property, Plant and Equipment

Property, Plant and Equipment. Property, plant and equipment are carried at cost less accumulated depreciation after assets are placed in service and are comprised primarily of buildings, furniture, machinery, equipment, land, and plants in North America and India. When property, plant and equipment are acquired as part of an acquisition, the items are recorded at fair value on the purchase date. It is the Company policy to depreciate capital assets over their estimated useful lives using the straight-line method.

Goodwill and Intangible Assets

Goodwill and Intangible Assets. Intangible assets consist of intellectual property in the form of patents pending, in-process research and development and goodwill. Once the patents pending or in-process R&D have secured a definite life in the form of a patent or product, they will be carried at cost less accumulated amortization over their estimated useful life. Amortization commences upon the commercial application or generation of revenue and is amortized over the shorter of the economic life or patent protection period.

Company intangible assets such as goodwill have indefinite lives and as a result need to be evaluated at least annually, or more frequently, if impairment indicators arise. In the Company’s review, the Company determines the fair value of the reporting unit using market indicators and discounted cash flow modeling. The Company compares the fair value to the net book value of the reporting unit. An impairment loss is recognized when the fair value is less than the related net book value, and an impairment expense is recorded in the amount of the difference. Forecasts of future cash flows are judgments based on the Company’s experience and knowledge of the Company’s operations and the industries in which the Company operates. These forecasts could be significantly affected by future changes in market conditions, the economic environment, including inflation, and the purchasing decisions of the Company’s customers. No indicators warranting reevaluation arose during the three months ended September 30, 2014.

California Ethanol Producer Incentive Program.

California Ethanol Producer Incentive Program.  The Company is eligible to participate in the California Ethanol Producer Incentive Program (“CEPIP”). Under the CEPIP an eligible California ethanol facility may receive up to $3 million in cash per plant per year of operations through 2013 when current production corn crush spreads, measured as the difference between specified ethanol and corn index prices, drop below $0.55 per gallon.  The California Energy Commission determines on an annual basis the funding allocated to the program.  No funds were allocated to this program during the government’s 2012 fiscal year.  For any month in which a payment is made by the CEPIP, the Company may be required to reimburse the funds within the subsequent five years from each payment date, if the corn crush spreads exceed $1.00 per gallon. Since these funds are provided to subsidize current production costs and encourage eligible facilities to either continue production or start up production in low margin environments, the Company records the proceeds, if any, as a credit to cost of goods sold. With respect to CEPIP payments received and applied as reductions to cost of goods sold, the Company recorded none for the three and nine months ended September 30, 2014 and 2013, respectively. The strength of the crush spread resulted in the accrual and obligation to repay CEPIP funding in the amount of $1.8 million, the entire remaining amount of funds received from the program. As of September 30, 2014 and December 31, 2013, the Company carried an obligation of $1.1 million and $0.1 million. As a result of the current accrual, there are no further contingent liabilities related to this program.

Basic and Diluted Net Loss per Share

Basic and Diluted Net Income (Loss) per Share.  Basic income (loss) per share is computed by dividing income or loss attributable to common shareholders by the weighted average number of common shares outstanding for the period.  Diluted income (loss) per share reflects the dilution of common stock equivalents such as options, convertible preferred stock, debt and warrants to the extent the impact is dilutive.  As the Company incurred net income for the three and nine months ended September 30, 2014, potentially dilutive securities have been included in the diluted net income per share computations and any potentially anti-dilutive shares have been excluded and are shown below. As the Company incurred net loss for the three and nine months ended September 30, 2013, potentially dilutive securities have been excluded from the diluted net loss per share computations as their effect would be anti-dilutive.

The following table reconciles the number of shares utilized in the net income (loss) per share calculations for three and nine months ended September 30, 2014 and 2013:

	Three months ended Level 1					Nine months ended
		September 30, 2014		September 30, 2013			September 30, 2014		September 30, 2013
		(In thousands, except per share amounts					(In thousands, except per share amounts
Net income (loss)	$	464	$	(8,289	)	$	10,873	$	(27,695	)
Shares:
Weighted average shares outstanding—basic		20,555		19,390			20,284		18,863
Weighted average dilutive share equivalents from preferred shares		217		-			231		-
Weighted average dilutive share equivalents from stock options		460		-			242		-
Weighted average dilutive share equivalents from common warrants		244		-			189		-
Weighted average shares outstanding—diluted		21,476		19,390			20,946		18,863
Earnings (loss) per share—basic	$	0.02	$	(0.43	)	$	0.54	$	(1.47	)
Earnings (loss) per share—diluted	$	0.02	$	(0.43	)	$	0.52	$	(1.47	)

The following table shows the number of potentially dilutive shares excluded from the diluted net income (loss) per share calculation as of September 30, 2014 and September 30, 2013:

	As of
	September 30, 2014		September 30, 2013
Series B preferred		-		3,021
Common stock options and warrants		30		1,531
Convertible promissory note		-		18
Total number of potentially dilutive shares excluded from the basic and diluted net income (loss) per share calculation		30		4,570

Comprehensive Income

Comprehensive Income. ASC 220 Comprehensive Income requires that an enterprise report, by major components and as a single total, the change in its net assets from non-owner sources. The Company’s other comprehensive income and accumulated other comprehensive income consists solely of cumulative currency translation adjustments resulting from the translation of the financial statements of its foreign subsidiaries. The investment in these subsidiaries is considered indefinitely invested overseas, and as a result, deferred income taxes are not recorded for the currency translation adjustments.

Foreign Currency Translation/Transactions

Foreign Currency Translation/Transactions. Assets and liabilities of the Company’s non-U.S. subsidiaries that operate in a local currency environment, where that local currency is the functional currency, are translated into U.S. dollars at exchange rates in effect at the balance sheet date; with the resulting translation adjustments directly recorded to a separate component of accumulated other comprehensive income. Income and expense accounts are translated at average exchange rates during the year. Gains and losses from foreign currency transactions are recorded in other income.

Operating Segments

Operating Segments. Operating segments are defined as components of an enterprise about which separate financial information is available that is evaluated regularly by the chief operating decision maker, or decision-making group, in deciding how to allocate resources and in assessing performance. Aemetis recognizes two reportable geographic segments: “North America” and “India.”

The “North America” operating segment includes the Company’s 55 million gallon per year nameplate capacity ethanol plant in Keyes, California and the research facilities in College Park, Maryland.

The “India” operating segment encompasses the Company’s 50 million gallon per year nameplate capacity  biodiesel plant in Kakinada, India, the administrative offices in Hyderabad, India, and the holding companies in Nevada and Mauritius.

Fair Value of Financial Instruments

Fair Value of Financial Instruments. The Company’s financial instruments include cash and cash equivalents, accounts receivable, and accounts payable, other current liabilities, mandatorily redeemable Series B preferred stock, warrant liability and debt. The fair value of current financial instruments was estimated to approximate carrying value due to the short term nature of these instruments. The carrying amount of debt obligations, including discount issuance costs, held by the senior lender, subordinated debt and the seller note payable, at September 30, 2014 amounted to an aggregate of approximately $64.6 million in outstanding obligations. The debts were determined to have an estimated fair value of $62.0 million based on interest rates for comparable debt.  The Company’s debt was valued using inputs from independent consultants evaluating external market inputs and internal financings to determine appropriate discount rates to determine fair value.  It was not practicable to determine the fair market value of the Company’s remaining debt obligations due to the lack of availability of comparable credit facilities and the related party nature of the financial arrangements.  The warrant liability fair value was estimated using the Black-Scholes valuation pricing model at the end of each reporting period.

Share-Based Compensation

Share-Based Compensation. The Company recognizes share based compensation in accordance with ASC 718 Stock Compensation requiring the Company to recognize expense related to the estimated fair value of the Company’s share-based compensation awards at the time the awards are granted adjusted to reflect only those shares that are expected to vest. To estimate the discount for lack of marketability on restricted stock issued, the Company uses the Black-Scholes valuation pricing model, which assists in deriving the implied price of put options using the put-call parity principle.  The price of the put option divided by the market price quoted on the NASDAQ Global Market implies the discount for lack of marketability in valuing issued shares to consultants, debt holders, employees or affiliated investors.

Warrant liability

Warrant liability: The Company adopted guidance related to distinguishing liabilities from equity for certain warrants which contain a conditional obligation to repurchase feature. The Company estimates the fair value of future liability on warrants using the Black-Scholes pricing model. Assumptions within the pricing model include: 1) the risk-free interest rate, which comes from the U.S. Treasury yield curve for periods within the contractual life of the warrant 2) the expected life of the warrants is assumed to be the contractual life of the warrants, and, 3) the volatility is estimated based on an average of the historical volatilities.

The Company computes the fair value of the warrant liability at each reporting period and the change in the fair value is recorded through earnings. The key component in the value of the warrant liability is the Company's stock price, which is subject to significant fluctuation and is not under the Company's control. The resulting effect on the Company's net income (loss) is therefore subject to significant fluctuation and will continue to be so until the warrants are exercised, amended or expired. Assuming all other fair value inputs remain constant, the Company will record non-cash expense when the stock price increases and non-cash income when the stock price decreases.

Long - Lived Assets

Long - Lived Assets. The Company evaluates the recoverability of long-lived assets with finite lives in accordance with ASC Subtopic 360-10-35 Property Plant and Equipment –Subsequent Measurements, which requires recognition of impairment of long-lived assets whenever events or changes in circumstances indicate that the carrying amount of an asset may not be recoverable. When events or changes in circumstances indicate that the carrying amount of an asset may not be recoverable, based on estimated undiscounted cash flows, the impairment loss is measured as the difference between the carrying amount of the assets and its estimated fair value.

Commitments and Contingencies

Commitments and Contingencies. The Company records and/or discloses commitments and contingencies in accordance with ASC 450 Contingencies.  ASC 450 applies to an existing condition, situation, or set of circumstances involving uncertainty as to possible loss that will ultimately be resolved when one or more future events occur or fail to occur.

Convertible Instruments

Convertible Instruments.  The Company evaluates the impacts of convertible instruments based on the underlying conversion features.  Convertible Instruments are evaluated for treatment as derivatives that could be bifurcated and recorded separately.  Any beneficial conversion feature is recorded based on the intrinsic value difference at the commitment date.

Debt Modification Accounting

Debt Modification Accounting. The Company evaluates amendments to its debt in accordance with ASC 540-50 Debt – Modification and Extinguishments for modification and extinguishment accounting.  This evaluation includes comparing the net present value of cash flows of the new debt to the old debt to determine if changes greater than 10 percent occurred.  In instances where the net present value of future cash flows changes more than 10 percent, the Company applies extinguishment accounting and determines the fair value of its debt based on factors available to the Company. See Note 5 for discussion on debt extinguished during the current period.

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5. Notes Payable (Tables)

9 Months Ended

Sep. 30, 2014

Wet distiller's grains sales

Schedule of Notes Payable

	September 30, 2014			December 31, 2014
Third Eye Capital term note	$	7,369	$	7,193
Third Eye Capital revolving credit facility		19,095		38,349
Third Eye Capital revenue participation term note		10,162		9,465
Third Eye Capital acquisition term note		17,677		17,280
Cilion shareholder seller note payable		5,335		4,869
State Bank of India secured term loan		5,950		5,857
Subordinated notes		5,265		5,317
EB-5 long term promissory notes		1,538		1,037
Unsecured working capital loans and short-term notes		5,232		2,391
Total debt		77,623		91,758
Less current portion of debt		16,446		17,966
Total long term debt	$	61,177	$	73,792

Maturities of Long-term Debt

Twelve months ended September 30,	Debt Repayments
2015	$	16,617
2016*		58,335
2017		3,624
2018		-
2019		500
Total debt		79,076
Discounts		(1,453)
Total debt, net of discounts	$	77,623

*Due to the Company’s ability to extend the maturity of the Third Eye Capital notes by six months from the scheduled maturity of July 2015, the amounts are reflected above as a 2016 maturity.

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8. Fair Value of Warrants (Details) (USD $)	9 Months Ended
	Sep. 30, 2014	Sep. 30, 2013
Expected dividend yield	0.00%
Risk-free interest rate	1.07%
Exercise price	$ 0.01
Market value of common stock	$ 8.68	$ 3.2
Minimum [Member]
Expected volatility	81.02%
Expected Life (years), min	2 years 8 months 12 days
Maximum [Member]
Expected volatility	92.51%
Expected Life (years), min	3 years 3 months 18 days

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3. Property, Plant and Equipment (Details Narrative) (USD $) In Thousands, unless otherwise specified	3 Months Ended		9 Months Ended
	Sep. 30, 2014	Sep. 30, 2013	Sep. 30, 2014	Sep. 30, 2013
Disclosure3.PropertyPlantAndEquipmentDetailsNarrativeAbstract
Depreciation expense	$ 1,200	$ 1,200	$ 3,500	$ 3,500

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CONSOLIDATED CONDENSED STATEMENTS OF CASH FLOWS (Unaudited) (USD $) In Thousands, unless otherwise specified	9 Months Ended
	Sep. 30, 2014	Sep. 30, 2013
Operating activities:
Net income (loss)	$ 10,873	$ (27,695)
Adjustments to reconcile net income (loss) to net cash provided by (used in) operating activitites:
Share-based compensation	447	1,585
Depreciation	3,486	3,471
Debt related amortization expense	5,361	10,366
Intangibles and other amortization expense	95	164
Change in fair value of warrant liability	102	(197)
Loss on extinguishment of debt	1,346	3,709
(Gain) loss on sale/ Disposal of assets	119	(282)
Changes in operating assets and liabilities:
Accounts receivable	2,330	(704)
Inventory	(1,112)	(675)
Prepaid expenses	432	149
Other current assets and other assets	(341)	(332)
Accounts payable	(308)	(3,231)
Accrued interest expense and fees, net of payments	667	8,494
Other liabilities	(1,487)	(908)
Net cash provided by (used in) operating activities	22,010	(6,086)
Investing activities:
Capital expenditures	(1,834)	(429)
Proceeds from the sale of assets	99	1,175
Net cash (used in) provided by investing activities	(1,735)	746
Financing activities:
Proceeds from borrowings	8,070	8,830
Repayments of borrowings	(27,721)	(3,617)
Issuance of Common stock for services, option and warrant exercises	5	1,082
Net cash (used in) provided by financing activities	(19,646)	6,295
Effect of exchange rate changes on cash and cash equivalents	(61)	(133)
Net cash and cash equivalents increase for period	568	822
Cash and cash equivalents at beginning of period	4,926	291
Cash and cash equivalents at end of period	5,494	1,113
Supplemental disclosures of cash flow information, cash paid:
Interest payments	6,751	2,068
Income taxes expense	6	6
Supplemental disclosures of cash flow information, non-cash transactions:
Proceeds from exercise of stock options applied to accounts payable	16	0
Issuance of warrants to subordinated debt holders	1,301	1,127
Transfer between debt and other liabilities	438	0
Stock issued in connection with services	715	0
Payments of principal, fees and interest paid in Stock	0	3,211
Issuance of shares to related party for repayment of line of credit	0	822
Issuance of warrants to non-employees to secure procurement and working capital	0	336
Other asset transferred to related party	0	170
Warrant liability transferred to equity upon exercise	0	1,007
Exercise of conversion feature on note to equity	$ 47	$ 0

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5. Notes Payable

9 Months Ended

Sep. 30, 2014

Debt Disclosure [Abstract]

5. Notes Payable

Debt consists of the notes from our senior lender, Third Eye Capital, acting as Agent for the Purchasers and other secured lenders, other working capital lenders and subordinated lenders as follows:

	September 30, 2014			December 31, 2014
Third Eye Capital term note	$	7,369	$	7,193
Third Eye Capital revolving credit facility		19,095		38,349
Third Eye Capital revenue participation term note		10,162		9,465
Third Eye Capital acquisition term note		17,677		17,280
Cilion shareholder seller note payable		5,335		4,869
State Bank of India secured term loan		5,950		5,857
Subordinated notes		5,265		5,317
EB-5 long term promissory notes		1,538		1,037
Unsecured working capital loans and short-term notes		5,232		2,391
Total debt		77,623		91,758
Less current portion of debt		16,446		17,966
Total long term debt	$	61,177	$	73,792

Third Eye Capital Note Purchase Agreement

On July 6, 2012, Aemetis, Inc. and Aemetis Advanced Fuels Keyes, Inc. (“AAFK”), entered into an Amended and Restated Note Purchase Agreement with Third Eye Capital (the “Note Purchase Agreement”).  Pursuant to the Note Purchase Agreement, Third Eye Capital extended credit in the form of (i) senior secured term loans in an aggregate principal amount of approximately $7.2 million to replace existing notes held by Third Eye Capital (the “Term Notes”); (ii) senior secured revolving loans in an aggregate principal amount of $18.0 million (“Revolving Credit Facility”); (iii) senior secured term loans in the principal amount of $10.0 million to convert the prior revenue participation agreement to a Note (“Revenue Participation Term Notes”); (iv) senior secured term loans in an aggregate principal amount of $15.0 million (“Acquisition Term Notes”) used to fund the cash portion of the acquisition of Cilion, Inc. After this financing transaction, Third Eye Capital obtained sufficient equity ownership in the Company to be considered a related party (the Term Notes, Revolving Credit Facility, Revenue Participation Term Notes and Acquisition Term Notes are referred to herein collectively as, the “Notes”).  Initially, the Acquisition Term Notes and the Revenue Participation Term Notes matured on July 6, 2014, the Term Notes matured on October 18, 2012 and the Revolving Credit Facility matured on July 6, 2013 with extension rights subject to satisfaction of certain conditions.  The Notes have all been amended to extend the maturity date to July 1, 2015*, as described below.

In May 2014, Third Eye Capital agreed to the Limited Waiver and Amendment No. 7 to the Note Purchase Agreement to extend the maturity date of the Notes to July 1, 2015*, to modify the waterfall table, to fix the interest rate of the Term Notes at 14%, and to redefine the operating cash available to the Company for operating expenses. As consideration, the Company is required to pay an additional extension fee of $2.0 million plus an escalating monitoring fee beginning January 2015.

On November 7, 2014, Third Eye Capital agreed to Amendment No. 8 to the Note Purchase Agreement to extend a line of credit in the amount of $6.0 million available for advance to Aemetis, such advance to be added to the outstanding principal balance of the existing notes under the Note Purchase Agreement. In addition, Third Eye Capital agreed to give Aemetis the right to extend the maturity date of the notes to January 1, 2016 upon notice and payment of a 3% extension fee.  Pursuant to the terms of Amendment No.8, Aemetis agreed to a covenant to complete an equity offering of its preferred stock for net proceeds of not less than $20 million with all of such net proceeds to be used to repay the principal outstanding under the Note Purchase Agreement in accordance with the priorities set forth there in.  As consideration for Amendment No.8, the unconditional personal Guaranty from Chairman of the Company, the guaranties from Company parties and McAfee Capital, LLC owned by Mr. Eric McAfee were all reaffirmed. The Company also agreed to pay $0.2 million in consideration to Mr. McAfee and McAfee Capital in exchange for their willingness to provide the guaranties. In addition, Company agreed to an amendment fee to Third Eye Capital in the amount of $0.3 million which will be paid from the proceeds of the advance. As a result of Company’s ability to extend the maturity of the notes under Amendment No.8, the note balances have been classified as long term debt in the accompanying September 30, 2014 balance sheet. See Note 14 - Subsequent Events.

Terms of Third Eye Capital Notes

Details about each portion of the Third Eye Capital financing facility are as follows:

A. Term Notes.  As of September 30, 2014, AAFK had $7.4 million in principal and interest outstanding, net of unamortized fair value discounts of $0.2 million.  The Term Notes mature on July 1, 2015*.  Interest on the Term Notes accrues at 14% per annum.  The Term Notes contain various covenants, including but not limited to, minimum free cash flow and production requirements and restrictions on capital expenditures.  On July 26, 2013 and October 28, 2013, the Company received waivers for certain covenants by Amendment No. 5 and Amendment No. 6 to the Note Purchase Agreement, respectively.  Additionally, Amendment No. 5 waived the requirement for minimum monthly base payments, interest payments and mandatory tiered redemption payments in favor of a daily cash flow sweep equal to 20% of cash deposits from operating activities.

B. Revolving Credit Facility.  On July 6, 2012 AAFK entered into a Revolving Credit Facility with a commitment of $18.0 million.  Through various amendments to the Note Purchase Agreement, the amount of the Revolving Loan Facility was increased to approximately $39.0 million.  Interest on the Revolving Credit Facility accrues at the prime rate plus 13.75% (17% as of September 30, 2014) payable monthly in arrears.  The Revolving Credit Facility matures on July 1, 2015*.  As of September 30, 2014, AAFK had $19.1 million in principal and interest outstanding, net of unamortized debt issuance costs of $0.6 million, on the Revolving Credit Facility.

C. Revenue Participation Term Notes.  The Revenue Participation Note bears interest at 5% per annum and matures on July 1, 2015*.  As of September 30, 2014, AAFK had $10.2 million in principal and interest outstanding, net of unamortized discounts of $0.2 million, on the Revenue Participation Note.

D. Acquisition Term Notes.  The Acquisition Term Notes accrue interest at prime rate plus 10.75% (14% per annum as of September 30, 2014) and mature on July 1, 2015*.  As of September 30, 2014, Aemetis Facility Keyes had $17.7 million in principal and interest outstanding, net of unamortized discounts of $0.4 million, on the Term Notes.

* The note can be extended by the Company to January 2016 during the month of May 2015. In doing so, the Company is required to pay a fee of 3% of the carrying value of the debt.

The Third Eye Capital Notes are secured by first-lien deeds of trust on all real and personal property, and assignment of proceeds from all government grants and guarantees from Aemetis, Inc.  The Notes all contain cross-collateral and cross-default provisions.  McAfee Capital, LLC (“McAfee Capital”), owned by Eric McAfee, the Company’s Chairman and CEO, provided a guaranty of payment and performance up to the amount of $8 million plus interest, secured by 2.4 million shares of common stock of Aemetis that it owns. McAfee Capital owns 3.4 million shares of common stock of Aemetis.  In addition, Mr. McAfee himself also provided a lien on substantially all of his personal assets, and a guaranty of payment and performance up to the amount of $15.0 million plus interest.

Cilion shareholder seller note payable.  The Company’s merger with Cilion on July 6, 2012 provided $5.0 million in notes payable to Cilion shareholders as merger compensation subordinated to the senior secured Third Eye Capital Notes.  The liability bears interest at 3% per annum and is due and payable after the Third Eye Capital Notes have been paid in full.  As of September 30, 2014, Aemetis Facility Keyes, Inc. had $5.3 million in principal and interest outstanding  under the Cilion shareholder seller note payable.

State Bank of India secured term loan.  On July 17, 2008, Universal Biofuels Private Limited (“UBPL”), the Company’s India operating subsidiary, entered into a nine year secured term loan with the State Bank of India in the amount of approximately $6.0 million.  The term loan matured in March 2014 and is secured by UBPL’s assets, consisting of the  biodiesel plant and land in Kakinada.

In July 2008, the Company drew approximately $4.6 million against the secured term loan.  The loan principal amount is repayable in 20 quarterly installments of approximately $0.3 million, using exchange rates corresponding to the date of payment, with the first installment due in June 2009 and the last installment payment due in March 2014.  As of September 30, 2014, the 12% interest rate under this facility is subject to adjustment every two years, based on 0.25% above the Reserve Bank of India advance rate.  The principal payments scheduled for June 2009 through September 2014 were not made.  The term loan provides for liquidating damages at a rate of 2% per annum for the period of default.

On March 10, 2011, one of our subsidiaries, UBPL received a demand notice from the State Bank of India with respect to the Agreement of Loan for Overall Limit dated as of June 26, 2008. The notice informs UBPL that an event of default has occurred for failure to make an installment payment on the loan since June 2009 and demands repayment of the entire outstanding indebtedness of 19.60 crore rupees (approximately $3.2 million) together with all accrued interest thereon and any applicable fees and expenses.  As of September 30, 2014, UBPL was in default on interest and principal repayments, and all covenants, including asset coverage and debt service coverage ratios.  Additional provisions of default include the bank having the unqualified right to disclose or publish the Company’s name and its director’s names as defaulter in any medium or media.  At the bank’s option, it may also demand payment of the balance of the loan, since the principal payments have been in default since June 2009.  As a result, the Company has classified the entire loan amount as current.  The State Bank of India has filed a legal case before the Debt Recovery Tribunal (“DRT”), Hyderabad, for recovery of approximately $5.0 million against the Company and also impleaded Andhra Pradesh Industrial Infrastructure Corporation (“APIIC”) to expedite the process of registration of the factory land for which counter reply is yet to be filed by APIIC.  UBPL asserts that the State Bank of India did not provide the committed funding of the working capital loan and only funded a portion of the term loan, thus requiring the Company to enter into a working capital facility at unfavorable terms which served to hinder the business from developing at the planned rate. The State Bank of India has additionally required the personal guarantee of a former Executive Officer and the registration of the land underlying the factory as conditions prior to restructure of the loan. Payments have recently been made against the facility; however, the State Bank of India has rejected these payments as a good faith effort. In January 2014, the Company made payment of $162 thousand (1 crore rupees) against principal on the facility which was accepted by the State Bank of India. UBPL filed for a stay against further collection efforts pending the development of sufficient business in a domestic or international market that would allow UBPL to make meaningful repayments against the facility.  In May 2014, UBPL obtained an interim stay subject to payments of 1 crore rupees (approximately $0.2 million) each by May 15, 2014 and June 15, 2014. UBPL made these payments promptly.  In the event that the Company is unable to prevail with the aforementioned legal case, DRT may pass a decree for recovery of the amount due, which could include seizing Company property for recovery of amounts due. As of September 30, 2014 and December 31, 2013, the State Bank of India loan had $2.7 million and $3.2 million, respectively, in principal outstanding and accrued interest plus default interest of $3.3 million and $2.7 million respectively.

Subordinated Notes.  On January 6 and January 9, 2012, AAFK entered into Note and Warrant Purchase Agreements with two accredited investors pursuant to which it issued $3.0 million in 5% annual interest rate notes to the investors (the “Sub Notes”).  An additional $0.6 million and $0.8 million in Sub Notes were issued to one of the existing accredited investor’s Sub Notes balance in May and December 2012, respectively.  This same accredited investor received payments of $0.6 million in principal and $3 thousand in interest in July 2012. The Sub Notes included 2-year warrants exercisable for 170 thousand shares of Aemetis common stock at a price of $0.01 per share, subject to adjustment.  Interest is due at maturity.  Neither AAFK nor Aemetis may make any principal payments under the Sub Notes until all loans made by Third Eye Capital to AAFK are paid in full, except for a few exceptions where Sub Note investors will receive funds from EB-5 investments or sale of equipment.

The Company agreed to an Amendment No.1 to the Sub Notes to extend the maturity of the January 2012 Sub Notes to July 1, 2014 and refinanced the additional December 2012 Sub Note as two Sub Notes dated December 2012 and January 19, 2013, with principal amounts of $0.5 million and $0.1 million, respectively. Both the December 2012 Sub Note and the January 19, 2013 Sub Note had a maturity date of April 30, 2013. On January 24, 2013, an additional $0.3 million Sub Note was issued with a maturity date of April 30, 2013. On May 23, 2013, all Sub Notes above with a maturity date of April 30, 2013 were refinanced as a $1.0 million Sub Note (“May 2013 Note”) with a maturity date of December 31, 2013.

On January 1, 2014, the May 2013 Sub Note was amended to extend the maturity date until the earlier of (i) June 30, 2014; (ii) completion of an equity financing by AAFK or Aemetis in an amount of not less than $25.0 million; (iii) the completion of an Initial Public Offering by AAFK or Aemetis; or (iv) after the occurrence of an Event of Default, including failure to pay interest or principal when due and breaches of note covenants. A 10 percent cash extension fee was paid by adding the fee to the balance of the new Note and 30 thousand in common stock warrants were granted with a term of two years and an exercise price of $0.01 per share.  These January 1, 2014 amendments and the refinancing terms of the Note were evaluated and it was determined, in accordance with ASC 470-50 Debt – Modification and Extinguishment, that the loan was extinguished and as a result a loss on debt extinguishment of approximately $0.1 million was recorded in January 2014.

In March 2014, the Company received $0.5 million from EB-5 investments and repaid one of the accredited investors holding a sub note of January 2012 $0.5 million.

On July 1, 2014, the January 2014 Sub Note and two January 2013 Sub Notes with two accredited investors were amended to extend the maturity date until the earlier of (i) December 31, 2014; (ii) completion of an equity financing by AAFK or Aemetis in an amount of not less than $25.0 million; (iii) the completion of an Initial Public Offering by AAFK or Aemetis; or (iv) after the occurrence of an Event of Default, including failure to pay interest or principal when due and breaches of note covenants. A 10 percent cash extension fee was paid by adding the fee to the balance of the new Note and 118,107 in common stock warrants were granted with a term of two years and an exercise price of $0.01 per share. We evaluated these July 1, 2014 amendments and the refinancing terms of the Notes and determined in accordance with ASC 470-50 Debt – Modification and Extinguishment that the loans were extinguished and as a result a loss on debt extinguishment of approximately $1.2 million was recorded in July 2014.

On January 14, 2013, Laird Cagan, a related party, loaned $0.1 million through a promissory note maturing on April 30, 2013 with a five percent annualized interest rate and the right to exercise 5 thousand warrants exercisable at $0.01 per share.

At September 30, 2014 and December 31, 2013, the Company owed, in aggregate, subordinated notes in the amount of $5.3 million for each period in principal and interest outstanding, net of unamortized issuance and fair value discounts of $0.2 million and $0.3 million, respectively.

EB-5 long-term promissory notes.  EB-5 is a US government program authorized by the Immigration and Nationality Act designed to foster employment-based visa preference for immigrant investors to encourage the flow of capital into the U.S. economy and to promote employment of U.S. workers. On March 4, 2011, and amended on January 19, 2012, and on July 24, 2012, the Company entered into a Note Purchase Agreement with Advanced BioEnergy, LP, a California limited Partnership authorized as a Regional Center to receive EB-5 investments, for the issuance of up to 72 subordinated convertible promissory notes bearing interest at 3%, each note in the principal amount of $0.5 million is due and payable four years from the date of the note for a total aggregate principal amount of up to $36.0 million. The notes are convertible after three years at a conversion price of $30.00 per share.

Advanced BioEnergy, LP arranges investments with foreign investors, who each make investments in the Keyes plant project in investment increments of $0.5 million.  The Company sold notes in the amount of $1.0 million to the first two investors during the fourth quarter of 2012 and sold a $0.5 million note to an investor during the first quarter of 2014. As of September 30, 2014, $38 thousand in accrued interest remained outstanding on the notes.  The availability of the remaining $35.0 million will be determined by the ability of Advanced BioEnergy, LP to attract additional qualified investors.

Unsecured working capital loans.  In November 2008, the Company entered into an operating agreement with Secunderabad Oils Limited (“Secunderabad”).  Under this agreement Secunderabad agreed to provide the Company with working capital, on an as needed basis, to fund the purchase of feedstock and other raw materials for its Kakinada  biodiesel facility.  Working capital advances bear interest at the actual bank borrowing rate of Secunderabad of fifteen percent (15%).  In return, the Company agreed to pay Secunderabad an amount equal to 30% of the plant’s monthly net operating profit.  In the event that the Company’s  biodiesel facility operates at a loss, Secunderabad owes the Company 30% of the losses.  The agreement can be terminated by either party at any time without penalty.

During the three and nine months ended September 30, 2014, the Company made principal payments to Secunderabad of approximately $1.8 million and $4.2 million, respectively, under the agreement and interest payments of approximately $48 thousand and $127 thousand respectively, for working capital funding.  During the three and nine months ended September 30, 2013, the Company made principal payments to Secunderabad of approximately $0.7 million and $3.4 million, respectively, under the agreement and interest payments of approximately $16 thousand and $175 thousand, respectively, for working capital funding.  At September 30, 2014 and December 31, 2013 the Company had approximately $5.2 million and $1.9 million outstanding under this agreement, respectively.

Short-term notes.  Aemetis Technologies, formerly Zymetis, Inc., carries certain debt obligations associated with a series of grants issued by the Maryland Department of Business and Economic Development to Zymetis prior to the merger.  These grants were converted to promissory notes with interest upon the achievement of certain objectives. In the first quarter of 2014, the Company entered into a payment settlement agreement to pay off the principal and interest of approximately $0.4 million in monthly installments. As part of this agreement, the long term debt of $0.4 million has been classified into other long term liabilities. At September 30, 2014, the Company had approximately $292 thousand and $88 thousand in the other long term liabilities and other current liabilities, respectively. The remaining promissory note with principal and interest of approximately $47 thousand was converted in May 2014 at $2.50 per share into common stock of the Company. 

Scheduled debt repayments for loan obligations follow:

Twelve months ended September 30,	Debt Repayments
2015	$	16,617
2016*		58,335
2017		3,624
2018		-
2019		500
Total debt		79,076
Discounts		(1,453)
Total debt, net of discounts	$	77,623

*Due to the Company’s ability to extend the maturity of the Third Eye Capital notes by six months from the scheduled maturity of July 2015, the amounts are reflected above as a 2016 maturity.

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6. Commitments and Contingencies (Tables)

9 Months Ended

Sep. 30, 2014

Commitments And Contingencies Tables

Schedule of minimum operating lease payments

Twelve months ended September 30,	Future Rent  Repayments
2015	$	169

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2. Inventory (Details Narrative) (USD $) In Thousands, unless otherwise specified	Sep. 30, 2014	Dec. 31, 2013
Inventory Details Narrative
Lower of cost or market reserve	$ 7	$ 0

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15. Management's Plan

9 Months Ended

Sep. 30, 2014

Notes to Financial Statements

15. Management's Plan

The accompanying financial statements have been prepared contemplating the realization of assets and satisfaction of liabilities in the normal course of business. During 2014, the Company has been reliant on their senior secured lender to provide additional funding and has been required to remit substantially all excess cash from operations to the senior secured lenders. Management’s plans for the Company include:

● Operating the Keyes plant in the current positive margin environment;

● Continuing to incorporate lower-cost, non-food advanced biofuels feedstock at the Keyes plant;

● Attracting investors to financing arrangements including working with Advanced BioEnergy LP to issue up to $34.5 million of additional EB-5 notes at 3% interest rate;

● Refinancing the senior debt with a lender who is able to offer terms conducive to the long term financing of the Keyes plant;

● Restructuring or refinancing the State Bank of India note to allow for additional working capital and reduce current financing costs;

● Securing higher volumes of international shipments from the Kakinada, India  biodiesel and refined glycerin facility; and

● Continuing to expand in the India market

Management believes that through the above mentioned actions it will be able to fund company operations and continue to operate the secured assets for the foreseeable future. There can be no assurance that the existing credit facilities and cash from operations will be sufficient nor that the Company will be successful at maintaining adequate relationships with the senior lenders or significant shareholders. Should the Company require additional financing, there can be no assurances that the additional financing will be available on terms satisfactory to the Company.