<?xml version="1.0"?>
<ownershipDocument>

    <schemaVersion>X0306</schemaVersion>

    <documentType>4/A</documentType>

    <periodOfReport>2019-06-14</periodOfReport>

    <dateOfOriginalSubmission>2019-06-18</dateOfOriginalSubmission>

    <notSubjectToSection16>0</notSubjectToSection16>

    <issuer>
        <issuerCik>0000351834</issuerCik>
        <issuerName>SunOpta Inc.</issuerName>
        <issuerTradingSymbol>STKL</issuerTradingSymbol>
    </issuer>

    <reportingOwner>
        <reportingOwnerId>
            <rptOwnerCik>0001664397</rptOwnerCik>
            <rptOwnerName>Barnett Jill</rptOwnerName>
        </reportingOwnerId>
        <reportingOwnerAddress>
            <rptOwnerStreet1>SUNOPTA INC.,</rptOwnerStreet1>
            <rptOwnerStreet2>7301 OHMS LANE</rptOwnerStreet2>
            <rptOwnerCity>EDINA</rptOwnerCity>
            <rptOwnerState>MN</rptOwnerState>
            <rptOwnerZipCode>55439</rptOwnerZipCode>
            <rptOwnerStateDescription></rptOwnerStateDescription>
        </reportingOwnerAddress>
        <reportingOwnerRelationship>
            <isDirector>0</isDirector>
            <isOfficer>1</isOfficer>
            <isTenPercentOwner>0</isTenPercentOwner>
            <isOther>0</isOther>
            <officerTitle>VP, General Counsel, Secretary</officerTitle>
        </reportingOwnerRelationship>
    </reportingOwner>

    <derivativeTable>
        <derivativeTransaction>
            <securityTitle>
                <value>Performance Stock Units</value>
            </securityTitle>
            <conversionOrExercisePrice>
                <footnoteId id="F1"/>
            </conversionOrExercisePrice>
            <transactionDate>
                <value>2019-06-14</value>
            </transactionDate>
            <deemedExecutionDate></deemedExecutionDate>
            <transactionCoding>
                <transactionFormType>4</transactionFormType>
                <transactionCode>A</transactionCode>
                <equitySwapInvolved>0</equitySwapInvolved>
            </transactionCoding>
            <transactionTimeliness>
                <value></value>
            </transactionTimeliness>
            <transactionAmounts>
                <transactionShares>
                    <value>48097</value>
                </transactionShares>
                <transactionPricePerShare>
                    <value>0.00</value>
                </transactionPricePerShare>
                <transactionAcquiredDisposedCode>
                    <value>A</value>
                </transactionAcquiredDisposedCode>
            </transactionAmounts>
            <exerciseDate>
                <footnoteId id="F2"/>
            </exerciseDate>
            <expirationDate>
                <footnoteId id="F3"/>
            </expirationDate>
            <underlyingSecurity>
                <underlyingSecurityTitle>
                    <value>Common Shares</value>
                </underlyingSecurityTitle>
                <underlyingSecurityShares>
                    <value>48097</value>
                </underlyingSecurityShares>
            </underlyingSecurity>
            <postTransactionAmounts>
                <sharesOwnedFollowingTransaction>
                    <value>48097</value>
                </sharesOwnedFollowingTransaction>
            </postTransactionAmounts>
            <ownershipNature>
                <directOrIndirectOwnership>
                    <value>D</value>
                </directOrIndirectOwnership>
            </ownershipNature>
        </derivativeTransaction>
    </derivativeTable>

    <footnotes>
        <footnote id="F1">Each Performance Stock Unit represents a contingent right to receive one share of STKL common stock.</footnote>
        <footnote id="F2">This amendment is being filed for the sole purpose of amending and restating footnote (2) to the original Form 4 as follows: The Performance
Stock Units (&quot;PSUs&quot;) vest based upon the Company's Adjusted EBITDA as publicly reported by the Company in its Annual Report on Form 10-K for its
2019 fiscal year. If 2019 Adjusted EBITDA is less than $44.2 million, none of the PSUs will vest. If 2019 Adjusted EBITDA is greater
than $44.2 million, a percentage of the PSUs, ranging from 33% to 100%, will vest in accordance with a vesting table. The vested
amount increases by one percentage point for each level of Adjusted EBITDA achieved, as specified in the vesting table. If the 2019 Adjusted
EBITDA is greater than or equal to $69.2 million, all of the PSUs will vest. Vesting is also subject to continued employment of the
reporting person through the vesting date.</footnote>
        <footnote id="F3">The Performance Stock Units do not have an expiration date.</footnote>
    </footnotes>

    <remarks></remarks>

    <ownerSignature>
        <signatureName>/s/ Jill Barnett</signatureName>
        <signatureDate>2019-06-19</signatureDate>
    </ownerSignature>
</ownershipDocument>
