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Condensed Statements of Cash Flows (Unaudited) - USD ($)
$ in Thousands
6 Months Ended
Jun. 30, 2017
Jun. 30, 2016
Operating activities:    
Net loss $ (68,438) $ (52,142)
Adjustments to reconcile net loss to net cash used in operating activities:    
License fee obligation 12,846  
Loss on debt extinguishment   696
Stock-based compensation 4,221 3,399
Depreciation and amortization of property and equipment 1,600 1,893
Amortization of premium on investment securities, net of accretion of discounts 97 465
Amortization of non-cash financing costs 321 260
Other 2,071 (671)
Increase (decrease) in cash resulting from changes in:    
Other current and long-term assets 376 (1,788)
Accounts payable, accrued expenses and other liabilities (641) (2,342)
Net cash used in operating activities (47,547) (50,230)
Investing activities:    
Purchases of investment securities (67,937) (99,782)
Maturities and sales of investment securities 68,260 89,523
Purchases of property and equipment (206) (1,056)
Proceeds from sale of property and equipment 37  
Net cash provided by (used in) investing activities 154 (11,315)
Financing activities:    
Proceeds from issuance of common stock, net of issuance costs 82,782 53,892
Proceeds from borrowings under term loan facility   17,116
Repayments of borrowings under term loan facility   (17,438)
Proceeds from exercise of stock options 1,512 399
Repayments under other long-term obligations (94) (89)
Net cash provided by financing activities 84,200 53,880
Net change in cash and cash equivalents 36,807 (7,665)
Cash and cash equivalents at beginning of period 24,340 46,383
Cash and cash equivalents at end of period 61,147 38,718
Supplemental disclosures of cash flow information:    
Cash paid for interest 1,317 1,551
Noncash investing and financing activities:    
Final payment obligation to Lenders recorded as debt discount (see note 6)   1,600
Unrealized gain on investment securities $ 31 312
Amounts capitalized under build-to-suit lease transaction   5,733
Interest capitalized during construction period for build-to-suit lease transaction   $ 642