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Condensed Consolidated Statements of Cash Flows (Unaudited) (USD $)
In Thousands, unless otherwise specified
9 Months Ended 111 Months Ended
Sep. 30, 2012
Sep. 30, 2011
Sep. 30, 2012
Cash flows from operating activities:      
Net loss $ (43,757) $ (19,119) $ (304,243)
Adjustments to reconcile net loss to net cash provided by (used in) operating activities:      
Depreciation and amortization 1,378 1,030 8,706
Accretion of investment discounts, net     (1,595)
Accretion of debt payment premium   64 999
Stock-based compensation 6,286 5,484 31,471
Loss on disposal of equipment and other non-cash items 177 11 2,461
Changes in operating assets and liabilities:      
Accounts receivable 188 (240) (448)
Prepaid expenses and other current assets 184 (31) (804)
Other assets   3 113
Accounts payable (1,879) 424 1,247
Accrued liabilities 233 (3,355) 7,086
Deferred revenue (2,784) 57,767 54,146
Other liabilities (55) (33) 8
Net cash provided by (used in) operating activities (40,029) 42,005 (200,853)
Cash flows from investing activities:      
Purchase of intangible assets and in-process research and development     (412)
Purchase of property and equipment (1,827) (2,001) (16,192)
Purchase of short-term investments     (169,497)
Sales and maturities of short-term investments     171,411
Purchase of restricted investment     (310)
Net cash used in investing activities (1,827) (2,001) (15,000)
Cash flows from financing activities:      
Proceeds from issuance of convertible notes payable     4,300
Proceeds from issuance of debt     31,006
Net proceeds from issuance of common stock through equity plans 1,128 1,786 7,839
Repayment of debt   (5,955) (32,105)
Proceeds from issuance of common stock resulting from drawdown of equity line of credit, net of issuance costs     19,653
Proceeds from issuance of common stock in equity offerings, net of issuance costs 56,130 2 196,950
Proceeds from issuance of convertible preferred stock, net of issuance costs     102,428
Net cash provided by (used in) financing activities 57,258 (4,167) 330,071
Net increase in cash and cash equivalents 15,402 35,837 114,218
Cash and cash equivalents at beginning of period 98,816 76,007  
Cash and cash equivalents at end of period 114,218 111,844 114,218
Supplemental disclosures of non-cash investing activities      
Purchase of property and equipment through accounts payable 135 112 135
Deferred offering cost in accrued liability 273   273
Deferred offering cost in accounts payable $ 50   $ 50