<?xml version="1.0"?>
<ownershipDocument>

    <schemaVersion>X0202</schemaVersion>

    <documentType>3</documentType>

    <periodOfReport>2006-11-20</periodOfReport>

    <noSecuritiesOwned>0</noSecuritiesOwned>

    <issuer>
        <issuerCik>0001364885</issuerCik>
        <issuerName>Spirit AeroSystems Holdings, Inc.</issuerName>
        <issuerTradingSymbol>SPR</issuerTradingSymbol>
    </issuer>

    <reportingOwner>
        <reportingOwnerId>
            <rptOwnerCik>0001380021</rptOwnerCik>
            <rptOwnerName>McManus Neil</rptOwnerName>
        </reportingOwnerId>
        <reportingOwnerAddress>
            <rptOwnerStreet1>C/O SPIRIT AEROSYSTEMS HOLDINGS, INC.</rptOwnerStreet1>
            <rptOwnerStreet2>3801 SOUTH OLIVER</rptOwnerStreet2>
            <rptOwnerCity>WICHITA</rptOwnerCity>
            <rptOwnerState>KS</rptOwnerState>
            <rptOwnerZipCode>67210</rptOwnerZipCode>
            <rptOwnerStateDescription></rptOwnerStateDescription>
        </reportingOwnerAddress>
        <reportingOwnerRelationship>
            <isDirector>0</isDirector>
            <isOfficer>1</isOfficer>
            <isTenPercentOwner>0</isTenPercentOwner>
            <isOther>0</isOther>
            <officerTitle>V.P./G.M. Spirit (Europe) Ltd.</officerTitle>
        </reportingOwnerRelationship>
    </reportingOwner>

    <derivativeTable>
        <derivativeHolding>
            <securityTitle>
                <value>Class B Common Stock</value>
                <footnoteId id="F1"/>
            </securityTitle>
            <conversionOrExercisePrice>
                <footnoteId id="F4"/>
            </conversionOrExercisePrice>
            <exerciseDate>
                <value>2006-11-20</value>
            </exerciseDate>
            <expirationDate>
                <footnoteId id="F2"/>
            </expirationDate>
            <underlyingSecurity>
                <underlyingSecurityTitle>
                    <value>Class A Common Stock</value>
                </underlyingSecurityTitle>
                <underlyingSecurityShares>
                    <value>18150</value>
                    <footnoteId id="F3"/>
                </underlyingSecurityShares>
            </underlyingSecurity>
            <ownershipNature>
                <directOrIndirectOwnership>
                    <value>D</value>
                </directOrIndirectOwnership>
            </ownershipNature>
        </derivativeHolding>
    </derivativeTable>

    <footnotes>
        <footnote id="F1">Each share of class B common stock, par value $0.01, of the issuer (the &quot;Class B Common Stock&quot;) is convertible at any time, at the option of the holder, into one share of class A common stock, par value $0.01, of the issuer (the &quot;Class A Common Stock&quot;).</footnote>
        <footnote id="F2">No expiration.</footnote>
        <footnote id="F3">Excludes 26,295 shares that will become beneficially owned upon the closing of an initial public offering of the Company's Class A Common Stock which is expected to be consummated on November 27, 2006.</footnote>
        <footnote id="F4">Convertible on a one-for-one basis.</footnote>
    </footnotes>

    <remarks></remarks>

    <ownerSignature>
        <signatureName>/s/ Gloria Farha Flentje, as attorney-in-fact for Neil McManus</signatureName>
        <signatureDate>2006-11-20</signatureDate>
    </ownerSignature>
</ownershipDocument>
