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Consolidated Statements of Comprehensive Loss - USD ($)
$ in Thousands
3 Months Ended
Mar. 31, 2017
Mar. 31, 2016
Statement of Comprehensive Income [Abstract]    
Net loss $ (32,377) $ (65,320)
Other comprehensive income (loss):    
Unrealized gain (loss) on investments (20) 587
Gain on foreign currency translation adjustments 3,252 698
Comprehensive loss (29,145) (64,035)
Comprehensive loss attributable to the noncontrolling interests 981 923
Comprehensive loss attributable to Intrexon $ (28,164) $ (63,112)