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Share-Based Payments - Additional Information (Details) - USD ($)
$ / shares in Units, $ in Thousands
1 Months Ended 3 Months Ended 9 Months Ended
Oct. 31, 2016
Nov. 30, 2015
Sep. 30, 2016
Sep. 30, 2016
Apr. 30, 2016
Dec. 31, 2015
Aug. 31, 2013
Chief Executive Officer              
Share-based Compensation Arrangement by Share-based Payment Award [Line Items]              
Monthly compensation, in the form of equity   $ 200          
Lock-up period   3 years          
Initial term of compensation arrangement   12 months          
Chief Executive Officer | Selling, general and administrative              
Share-based Compensation Arrangement by Share-based Payment Award [Line Items]              
Fair value of shares issued     $ 463 $ 1,397      
Intrexon Stock Option Plan - 2008 Plan              
Share-based Compensation Arrangement by Share-based Payment Award [Line Items]              
Remaining shares available to grant (in shares)             0
Options outstanding (in shares)     570,977 570,977      
Intrexon Stock Option Plan - 2013 Plan              
Share-based Compensation Arrangement by Share-based Payment Award [Line Items]              
Remaining shares available to grant (in shares)     3,982,064 3,982,064      
Options outstanding (in shares)     10,532,430 10,532,430      
Number of shares authorized for issuance (in shares)     16,000,000 16,000,000      
Intrexon Stock Option Plan - Other Plan              
Share-based Compensation Arrangement by Share-based Payment Award [Line Items]              
Options outstanding (in shares)     1,000,000 1,000,000      
Intrexon Stock Option Plans              
Share-based Compensation Arrangement by Share-based Payment Award [Line Items]              
Options outstanding (in shares)     12,103,407 12,103,407   11,043,528  
Unrecognized compensation costs related to nonvested awards     $ 106,649 $ 106,649   $ 113,655  
Recognized over weighted-average period       3 years      
Weighted average exercise price of option (in usd per share)     $ 31.24 $ 31.24   $ 32.66  
Shares exercisable at end of period (in shares)     3,369,252 3,369,252      
AquaBounty Stock Option Plan - 2006 Plan              
Share-based Compensation Arrangement by Share-based Payment Award [Line Items]              
Remaining shares available to grant (in shares)         0    
Options outstanding (in shares)     5,567,000 5,567,000   5,382,000  
Weighted average exercise price of option (in usd per share)     $ 0.26 $ 0.26   $ 0.26  
Shares exercisable at end of period (in shares)     5,321,598 5,321,598   4,320,333  
AquaBounty Stock Option Plan - 2016 Plan              
Share-based Compensation Arrangement by Share-based Payment Award [Line Items]              
Options outstanding (in shares)     0 0      
Subsequent Event | Chief Executive Officer              
Share-based Compensation Arrangement by Share-based Payment Award [Line Items]              
Initial term of compensation arrangement 2 months