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Consolidated Statements of Cash Flows - USD ($)
$ in Thousands
9 Months Ended
Sep. 30, 2016
Sep. 30, 2015
Cash flows from operating activities    
Net loss $ (145,362) $ (54,719)
Adjustments to reconcile net loss to net cash provided by (used in) operating activities:    
Depreciation and amortization 17,657 12,202
Loss on disposal of property, plant and equipment 297 519
Unrealized and realized (appreciation) depreciation on equity securities 45,388 (64,392)
Noncash dividend income (3,676) 0
Amortization of discount/premium on investments 862 298
Equity in net loss of affiliates 16,951 6,565
Stock-based compensation expense 30,631 26,524
Shares issued as payment for services 8,284 480
Shares issued as consideration for license agreement 0 59,579
Provision for bad debts 1,609 1,562
Deferred income taxes (2,967) 374
Other noncash items 1,259 305
Changes in operating assets and liabilities:    
Restricted cash (6,987) 0
Receivables:    
Trade 2,118 (12,014)
Related parties 7,438 (11,182)
Notes (42) 1
Other 381 6,390
Inventory 4,683 3,451
Prepaid expenses and other (985) (4,005)
Other assets 2,134 (3,817)
Accounts payable 2,901 (3,560)
Accrued compensation and benefits (8,001) 5,895
Other accrued liabilities 7,771 1,323
Deferred revenue (14,099) 52,400
Deferred consideration (630) (943)
Related party payables 479 (67)
Other long term liabilities 126 168
Net cash provided by (used in) operating activities (31,780) 23,337
Cash flows from investing activities    
Purchases of investments (75,246) (181,572)
Maturities of investments 71,987 70,000
Purchases of equity securities and warrants (2,308) (17,080)
Acquisitions of businesses, net of cash received 0 (114,480)
Acquisition of noncontrolling interest 0 (1,566)
Investments in affiliates (9,415) (4,699)
Cash paid in asset acquisition (7,244) 0
Purchases of property, plant and equipment (20,197) (9,841)
Proceeds from sale of property, plant and equipment 243 420
Issuances of notes receivable (2,964) 0
Proceeds from notes receivable 0 1,500
Net cash used in investing activities (45,144) (257,318)
Cash flows from financing activities    
Proceeds from issuance of shares in public offerings, net of issuance costs 0 328,234
Advances from lines of credit 2,308 13,719
Repayments of advances from lines of credit (2,320) (15,517)
Proceeds from long term debt 547 81
Payments of long term debt (848) (1,032)
Payments of deferred consideration (6,705) (6,252)
Proceeds from stock option exercises 18,180 12,208
Net cash provided by financing activities 11,162 331,441
Effect of exchange rate changes on cash and cash equivalents (313) 507
Net increase (decrease) in cash and cash equivalents (66,075) 97,967
Cash and cash equivalents    
Beginning of period 135,782 27,466
End of period 69,707 125,433
Supplemental disclosure of cash flow information    
Cash paid during the period for interest 875 1,119
Cash paid during the period for income taxes 0 1,165
Significant noncash financing and investing activities    
Note receivable as consideration for collaboration agreement 0 5,000
Stock received as consideration for collaboration agreements 18,766 4,667
Preferred stock received as consideration for collaboration amendments 120,000 0
Stock issued in business combinations 0 126,863
Stock issued to acquire noncontrolling interest 0 9,412
Stock issued in asset acquisition 4,401 0
Contingent consideration assumed in asset acquisition 3,660 0
Noncash dividend to shareholders 0 172,419
Deferred consideration payable related to acquisition 0 11,440
Purchases of equipment included in accounts payable and other accrued liabilities $ 926 $ 533