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Share-Based Payments - Additional Information (Details) - USD ($)
$ / shares in Units, $ in Thousands
3 Months Ended 6 Months Ended
Jun. 30, 2016
Jun. 30, 2016
Apr. 30, 2016
Dec. 31, 2015
Aug. 31, 2013
Chief Executive Officer          
Share-based Compensation Arrangement by Share-based Payment Award [Line Items]          
Monthly compensation, in the form of equity   $ 200      
Lock-up period   3 years      
Initial term of compensation arrangement   12 months      
Chief Executive Officer | Selling, general and administrative          
Share-based Compensation Arrangement by Share-based Payment Award [Line Items]          
Fair value of shares issued $ 463 $ 934      
Intrexon Stock Option Plan - 2008 Plan          
Share-based Compensation Arrangement by Share-based Payment Award [Line Items]          
Remaining shares available to grant         0
Options outstanding (in shares) 597,491 597,491      
Intrexon Stock Option Plan - 2013 Plan          
Share-based Compensation Arrangement by Share-based Payment Award [Line Items]          
Remaining shares available to grant 3,936,628 3,936,628      
Options outstanding (in shares) 10,714,034 10,714,034      
Number of shares authorized for issuance 16,000,000 16,000,000      
Intrexon Stock Option Plans          
Share-based Compensation Arrangement by Share-based Payment Award [Line Items]          
Options outstanding (in shares) 11,311,525 11,311,525   11,043,528  
Unrecognized compensation costs related to nonvested awards $ 106,977 $ 106,977   $ 113,655  
Recognized over weighted-average period   3 years      
Weighted average exercise price of option (in usd per share) $ 31.81 $ 31.81   $ 32.66  
Shares exercisable at end of period 2,754,250 2,754,250      
AquaBounty Stock Option Plan - 2006 Plan          
Share-based Compensation Arrangement by Share-based Payment Award [Line Items]          
Remaining shares available to grant     0    
Options outstanding (in shares) 5,607,000 5,607,000   5,382,000  
Weighted average exercise price of option (in usd per share) $ 0.26 $ 0.26   $ 0.26  
Shares exercisable at end of period 5,231,040 5,231,040   4,320,333  
AquaBounty Stock Option Plan - 2016 Plan          
Share-based Compensation Arrangement by Share-based Payment Award [Line Items]          
Options outstanding (in shares) 0 0