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Consolidated Statements of Cash Flows - USD ($)
$ in Thousands
6 Months Ended
Jun. 30, 2016
Jun. 30, 2015
Cash flows from operating activities    
Net loss $ (115,351) $ (15,690)
Adjustments to reconcile net loss to net cash used in operating activities:    
Depreciation and amortization 11,674 7,358
Loss on disposal of property, plant and equipment 225 201
Unrealized and realized (appreciation) depreciation on equity securities 45,800 (94,845)
Amortization of discount/premium on investments 598 196
Equity in net loss of affiliates 10,696 4,136
Stock-based compensation expense 19,839 18,139
Shares issued as payment for services 5,689 480
Shares issued as consideration for license agreement 0 59,579
Provision for bad debts 1,183 984
Deferred income taxes (2,659) 952
Other noncash items 391 542
Receivables:    
Trade (2,463) (127,516)
Related parties 9,203 213
Note (24) (20)
Other 626 210
Inventory 2,071 (1,212)
Prepaid expenses and other 1,299 (1,669)
Other assets 2,697 (4,876)
Accounts payable 2,834 (125)
Accrued compensation and benefits (9,543) 4,099
Other accrued liabilities 4,807 839
Deferred revenue (6,078) 60,909
Related party payables 331 57,370
Other long term liabilities 106 188
Net cash used in operating activities (16,049) (29,558)
Cash flows from investing activities    
Maturities of investments 41,987 48,000
Purchases of equity securities and warrants (1,167) (14,900)
Acquisitions of businesses, net of cash received 0 (39,501)
Acquisition of noncontrolling interest 0 (1,566)
Investments in affiliates (5,054) (3,334)
Cash paid in asset acquisition (7,244) 0
Purchases of property, plant and equipment (10,038) (6,740)
Proceeds from sale of property, plant and equipment 140 233
Net cash provided by (used in) investing activities 18,624 (17,808)
Cash flows from financing activities    
Proceeds from issuance of shares in public offerings, net of issuance costs 0 110,041
Advances from lines of credit 1,540 11,680
Repayments of advances from lines of credit (1,640) (13,080)
Proceeds from long term debt 0 44
Payments of long term debt (685) (678)
Proceeds from stock option exercises 17,671 10,382
Net cash provided by financing activities 16,886 118,389
Effect of exchange rate changes on cash and cash equivalents (162) 410
Net increase in cash and cash equivalents 19,299 71,433
Cash and cash equivalents    
Beginning of period 135,782 27,466
End of period 155,081 98,899
Supplemental disclosure of cash flow information    
Cash paid during the period for interest 140 99
Significant noncash financing and investing activities    
Note receivable as consideration for collaboration agreement 0 5,000
Stock received as consideration for collaboration agreements 13,666 0
Preferred stock received as consideration for collaboration amendments 120,000 0
Stock issued in business combinations 0 70,668
Stock issued to acquire noncontrolling interest 0 9,412
Stock issued in asset acquisition 4,401 0
Contingent consideration assumed in asset acquisition 3,660 0
Noncash dividend to shareholders 0 172,419
Purchases of equipment included in accounts payable and other accrued liabilities $ 1,118 $ 1,064