Consolidated Statements of Comprehensive Income (Loss) - USD ($) $ in Thousands	3 Months Ended
	Mar. 31, 2016	Mar. 31, 2015
Statement of Comprehensive Income [Abstract]
Net income (loss)	$ (65,320)	$ 25,804
Other comprehensive income (loss):
Unrealized gain on investments	587	27
Foreign currency translation adjustments	698	(3,120)
Comprehensive income (loss)	(64,035)	22,711
Comprehensive loss attributable to the noncontrolling interests	923	1,253
Comprehensive income (loss) attributable to Intrexon	$ (63,112)	$ 23,964