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Consolidated Statement of Cash Flows
12 Months Ended
Dec. 31, 2015
USD ($)
Dec. 31, 2014
USD ($)
Dec. 31, 2013
USD ($)
Cash flows from operating activities:      
Net loss $ (21,310,000) $ (36,732,000) $ (39,615,000)
Adjustments to reconcile net loss to net cash used in operating activities:      
Share-based compensation expense 1,120,000 427,000 3,371,000
Change in fair value of contingent consideration liability (27,132,000) (8,149,000) 39,913,000
Recognition of right to borrow asset     (2,800,000)
Amortization of debt discount and deferred interest 2,246,000 2,216,000 1,079,000
Amortization of discount on available-for-sale securities 81,000 163,000  
Depreciation and amortization 3,001,000 3,393,000 3,323,000
Loss/(gain) on disposal of property and equipment   8,000 (15,000)
Impairment of property and equipment 8,591,000 0  
Impairment of inventory 1,229,000    
Impairment of prepaid expenses 1,024,000    
Changes in operating assets and liabilities:      
Receivables 173,000 (44,000) (129,000)
Inventory 2,500,000 (282,000) (3,447,000)
Prepaid expenses and other current assets (1,152,000) (822,000) (601,000)
Other assets 1,812,000    
Accounts payable (1,357,000) (1,990,000) 1,642,000
Accrued clinical trial expense and other accrued liabilities 558,000 654,000 1,122,000
Deferred revenues (2,665,000) 413,000 (2,916,000)
Other liabilities (602,000) (754,000) (1,539,000)
Net cash used in operating activities (31,883,000) (41,499,000) (612,000)
Cash flows from investing activities:      
Purchase of available-for-sale securities (5,796,000) (42,003,000) (19,227,000)
Maturities of available-for-sale securities 25,292,000 30,840,000 10,650,000
Purchases of property and equipment (58,000) (2,363,000) (1,784,000)
Proceeds from disposal of property and equipment 15,000   16,000
Net cash (used in) provided by investing activities 19,453,000 (13,526,000) (10,345,000)
Cash flows from financing activities:      
Proceeds from issuance of common stock, common stock warrants and exercise of stock options and stock purchase rights 182,000 5,878,000 6,583,000
Payment of contingent payment to Symphony Allegro Holdings, LLC (868,000) (251,000) (10,313,000)
Change in restricted cash 2,757,000 (2,757,000) 5,051,000
Proceeds from financing obligations 2,914,000 50,830,000 15,000,000
Payments of financing obligations   (781,000) (5,773,000)
Net cash provided by financing activities 4,985,000 52,919,000 10,548,000
Net decrease in cash and cash equivalents (7,445,000) (2,106,000) (409,000)
Cash and cash equivalents at beginning of period 15,200,000 17,306,000  
Cash and cash equivalents at end of period 7,755,000 15,200,000 17,306,000
Supplemental disclosures of cash flow information      
Cash paid for interest $ 2,757,000 4,169,000 863,000
Non cash investing and financing activities:      
Debt discount related to Teva Note     4,405,000
Value of warrants issued with royalty securitization financing   1,721,000  
Value of the beneficial conversion feature related to borrowing against Teva Note   $ 1,032,000 3,112,000
Value of right to borrow asset reclassified as debt discount     $ 2,800,000