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Income Taxes - Effective tax reconciliation (Details) - USD ($)
$ in Thousands
12 Months Ended
Oct. 03, 2020
Sep. 28, 2019
Sep. 29, 2018
Income Tax Disclosure [Abstract]      
U.S. federal income taxes at statutory rate $ (4,217) $ (226) $ (3,570)
U.S. state and local income taxes (2,798) (9,315) (1,441)
Foreign income tax rate differential (75) 129 (53)
Stock-based compensation 869 (2,399) 4,025
Federal research tax credits (8,012) (8,418) (4,333)
Unrecognized federal tax benefits 815 (2,806) 1,990
Change in tax rate 0 1,161 25,725
Net Impact of GILTI 0 239 0
BEAT (781) 781 0
Other 598 822 259
Change in valuation allowance 13,633 23,722 (21,546)
Provision for income taxes $ 32 $ 3,690 $ 1,056