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Condensed Consolidated Statements of Cash Flows (Unaudited) - USD ($)
$ in Thousands
6 Months Ended
Jun. 30, 2019
Jun. 30, 2018
Jun. 30, 2019
Jun. 30, 2018
Cash flows from operating activities:        
Net loss $ (360,228) $ (261,120)    
Adjustments to reconcile net loss to net cash used in operating activities:        
Change in fair value of contingent consideration 510 796    
Depreciation and amortization 7,831 8,199    
Stock-based compensation expense 87,452 51,051    
Unrealized loss on equity securities 6,184      
Other non-cash items (7,064) 2,834    
Changes in operating assets and liabilities:        
Prepaid expenses and other assets (20,694) (3,279)    
Operating lease right-of-use assets 11,037      
Accounts payable 6,652 4,097    
Accrued expenses and other liabilities (9,301) 9,789    
Operating lease liabilities (259)      
Deferred revenue (11,716) (21,589)    
Collaboration research advancement (2,431)      
Net cash used in operating activities (292,027) (209,222)    
Cash flows from investing activities:        
Purchase of property, plant and equipment (37,925) (20,689)    
Purchases of marketable securities (471,365) (689,163)    
Proceeds from maturities of marketable securities 704,803 417,640    
Net cash provided by (used in) investing activities 195,513 (292,212)    
Cash flows from financing activities:        
Proceeds from public offering of common stock, net of issuance costs   48,702    
Reimbursement of assets under financing lease obligation   3,098    
Payments on financing lease obligation   (446)    
Proceeds from exercise of stock options and ESPP contributions 15,004 25,624    
Net cash provided by financing activities 15,004 76,978    
Decrease in cash, cash equivalents and restricted cash (81,510) (424,456)    
Cash, cash equivalents and restricted cash at beginning of period 417,099 772,268    
Cash, cash equivalents and restricted cash at end of period 335,589 347,812    
Reconciliation of cash, cash equivalents and restricted cash:        
Cash and cash equivalents     $ 280,995 $ 333,949
Restricted cash included in receivables and other current assets     $ 100 $ 100
Restricted Cash, Current, Asset, Statement of Financial Position [Extensible List]     blue:ReceivablesAndOtherCurrentAssets blue:ReceivablesAndOtherCurrentAssets
Restricted cash included in restricted cash and other non-current assets     $ 54,494 $ 13,763
Restricted Cash, Noncurrent, Asset, Statement of Financial Position [Extensible List]     us-gaap:OtherAssetsNoncurrent us-gaap:OtherAssetsNoncurrent
Total cash, cash equivalents and restricted cash 417,099 772,268 $ 335,589 $ 347,812
Supplemental cash flow disclosures from investing and financing activities:        
Purchases of property, plant and equipment included in accounts payable and accrued expenses 8,869 $ 7,815    
Assets acquired under operating lease obligation $ 17,489