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Income Taxes (Details) (USD $)
In Thousands, unless otherwise specified
12 Months Ended
Dec. 31, 2012
Dec. 31, 2011
Dec. 31, 2010
Reconciliation of the Company's effective tax rate to the statutory federal income tax rate      
Federal statutory rate (as a percent) 35.00% 35.00% 35.00%
State taxes, net of Federal benefit (as a percent) 4.50% 4.20% 4.60%
Permanent differences (as a percent) (0.20%) (0.40%) (2.60%)
Stock compensation (as a percent) (0.30%) (1.20%) (2.90%)
Change in valuation allowance (as a percent) (35.50%) (36.30%) (39.20%)
Tax credits (as a percent) 1.10% 3.90% 5.10%
Foreign rate differentials (as a percent) (4.10%) (4.40%)  
Other (as a percent) (0.50%) (0.80%)  
Deferred tax assets      
Net operating losses $ 77,806 $ 40,633  
Capitalized research and development expenses 40,083 47,640  
Credit carryforwards 14,398 13,380  
Depreciation 2,931 2,337  
Deferred compensation 5,068 4,450  
Deferred revenue 29,936 26,462  
Accrued expenses 1,184 676  
Others 1,934 922  
Total gross deferred tax asset 173,340 136,500  
Intangible assets (3,689) (3,817)  
Valuation allowance $ (169,651) $ (132,683)