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License and Collaboration Agreements (Details) (USD $)
3 Months Ended 12 Months Ended 1 Months Ended 12 Months Ended 1 Months Ended 3 Months Ended 12 Months Ended 1 Months Ended 12 Months Ended 1 Months Ended
Dec. 31, 2012
Sep. 30, 2012
Jun. 30, 2012
Mar. 31, 2012
Dec. 31, 2011
Sep. 30, 2011
Jun. 30, 2011
Mar. 31, 2011
Dec. 31, 2012
Dec. 31, 2011
Dec. 31, 2010
Dec. 31, 2012
Sanofi
Phase 2 clinical trials in breast cancer and non-small cell lung cancer and ovarian cancer
Dec. 31, 2011
Sanofi
Phase 2 clinical trials in breast cancer and non-small cell lung cancer and ovarian cancer
Dec. 31, 2010
Sanofi
Phase 2 clinical trials in breast cancer and non-small cell lung cancer and ovarian cancer
Nov. 30, 2009
License and Collaboration Agreements
Sanofi
Dec. 31, 2012
License and Collaboration Agreements
Sanofi
Dec. 31, 2011
License and Collaboration Agreements
Sanofi
Dec. 31, 2010
License and Collaboration Agreements
Sanofi
Jul. 31, 2009
License and Collaboration Agreements
GTC
Dec. 31, 2012
License and Collaboration Agreements
GTC
Dec. 31, 2012
License and Collaboration Agreements
GTC
Dec. 31, 2011
License and Collaboration Agreements
GTC
Dec. 31, 2010
License and Collaboration Agreements
GTC
Jul. 31, 2009
License and Collaboration Agreements
GTC
Series C convertible preferred stock
Dec. 31, 2012
License and Collaboration Agreements
PharmaEngine
Dec. 31, 2011
License and Collaboration Agreements
PharmaEngine
May 31, 2011
License and Collaboration Agreements
PharmaEngine
Development and regulatory milestone
May 31, 2011
License and Collaboration Agreements
PharmaEngine
Sales milestone
License and collaboration agreements                                                        
Upfront license fee received                             $ 60,000,000                          
Milestone payments received                       5,000,000 10,000,000 10,000,000                            
Expected development period from the effective date of agreement                             12 years       19 years                  
License agreement termination period                                       3 months                
Additional revenue recongnized due to a change in estimate                                       657,000                
Recognized revenue under collaboration agreements                                                        
Upfront payment                               5,000,000 5,000,000 5,000,000                    
Milestone payment                               2,975,000 2,616,000 949,000                    
Development services                               36,905,000 25,053,000 13,279,000                    
Manufacturing services and other                               3,307,000 1,456,000 630,000                    
Total                               48,187,000 34,125,000 19,858,000                    
Assets and liabilities related to collaboration agreement                                                        
Accounts receivable, billed                               1,577,000 4,478,000                      
Accounts receivable, unbilled                               7,690,000 2,925,000                      
Deferred revenues                               79,913,000 84,466,000     553,000 553,000 1,279,000 1,356,000          
Collaborative arrangement additional information                                                        
Shares received as consideration under the license agreement                                               662,000        
Fair value of shares received as consideration under the license agreement                                               1,469,000        
Revenue recognized 14,191,000 11,323,000 12,063,000 11,344,000 12,577,000 8,582,000 6,595,000 6,461,000 48,921,000 34,215,000 20,305,000                   733,000 76,000 76,000          
Maximum milestone payment obligation                                                     80,000,000 130,000,000
Research and development expenses                 125,858,000 100,630,000 58,278,000                           6,200,000 11,200,000    
Amounts payable related to the agreement                                                 $ 345,000 $ 280,000