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Condensed Consolidated Statements of Cash Flows (Unaudited) (USD $)
In Thousands
6 Months Ended
Jun. 30, 2011
Jun. 30, 2010
Cash flows from operating activities:    
Net loss $ (103,703) $ (109,227)
Adjustments to reconcile net loss to net cash used in operating activities:    
Realized gains on sales of current marketable securities (1) (55)
Depreciation and amortization 741 1,324
Stock-based compensation 14,152 10,948
Amortization of convertible senior notes discount and debt issuance costs 4,944 4,691
Changes in fair value of liability for contingent consideration 17,250 95,485
Property and equipment write-off 732  
Impairment of equity investment 3,000  
Changes in operating assets and liabilities:    
Restricted cash   (14)
Receivable from collaboration partners 533 (876)
Prepaid expenses and other current assets (2,350) 913
Other assets 14,573 (19,293)
Accounts payable 7 1,245
Accrued liabilities (1,593) (407)
Accrued clinical trials and related expenses 3,797 (1,618)
Accrued compensation (1,052) (6,320)
Escrow liability (31,634) 14
Lease termination exit costs liability 13,087  
Other liabilities 5,610 (431)
Net cash used in operating activities (61,907) (23,621)
Cash flows from investing activities:    
Purchases of marketable securities (260,094) (236,612)
Sales of marketable securities 80,280 248,255
Maturities of marketable securities 149,750 245,010
Transfers from restricted cash 31,910 (4,000)
Payment for liability for contingent consideration, current   (36,000)
Capital expenditures (9,221) (267)
Net cash provided by investing activities (7,375) 216,386
Cash flows from financing activities:    
Repurchases of restricted stock awards (180) (45)
Net proceeds from issuances of common stock 11,865 3,735
Net cash provided by financing activities 11,685 3,690
Net increase (decrease) in cash and cash equivalents (57,597) 196,455
Cash and cash equivalents at beginning of period 226,340 107,668
Cash and cash equivalents at end of period 168,743 304,123
Supplemental cash flow data    
Cash paid during the period for income taxes    
Cash paid during the period for interest $ 4,600 $ 4,677