-----BEGIN PRIVACY-ENHANCED MESSAGE----- Proc-Type: 2001,MIC-CLEAR Originator-Name: webmaster@www.sec.gov Originator-Key-Asymmetric: MFgwCgYEVQgBAQICAf8DSgAwRwJAW2sNKK9AVtBzYZmr6aGjlWyK3XmZv3dTINen TWSM7vrzLADbmYQaionwg5sDW3P6oaM5D3tdezXMm7z1T+B+twIDAQAB MIC-Info: RSA-MD5,RSA, ODm1LAPUswHRCEDPVYHSM+3YpimukZq7z0LlErQE/HT1/3+sy3tegpfoCH4JpcGh VZNYaINKeYq4MznVB86K0Q== 0000950135-99-001476.txt : 19990325 0000950135-99-001476.hdr.sgml : 19990325 ACCESSION NUMBER: 0000950135-99-001476 CONFORMED SUBMISSION TYPE: 10-K PUBLIC DOCUMENT COUNT: 9 CONFORMED PERIOD OF REPORT: 19981231 FILED AS OF DATE: 19990324 FILER: COMPANY DATA: COMPANY CONFORMED NAME: MILLENNIUM PHARMACEUTICALS INC CENTRAL INDEX KEY: 0001002637 STANDARD INDUSTRIAL CLASSIFICATION: PHARMACEUTICAL PREPARATIONS [2834] IRS NUMBER: 043177038 STATE OF INCORPORATION: DE FISCAL YEAR END: 1231 FILING VALUES: FORM TYPE: 10-K SEC ACT: SEC FILE NUMBER: 000-28494 FILM NUMBER: 99571770 BUSINESS ADDRESS: STREET 1: 640 MEMORIAL DRIVE CITY: CAMBRIDGE STATE: MA ZIP: 02139 BUSINESS PHONE: 6176797000 MAIL ADDRESS: STREET 1: 640 MEMORIAL DR CITY: CAMBRIDGE STATE: MA ZIP: 02139 10-K 1 MILLENNIUM PHARMACEUTICALS, INC. 1 SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 10-K FOR ANNUAL AND TRANSITION REPORTS PURSUANT TO SECTIONS 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934 (Mark One) [X] ANNUAL REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934 For the fiscal year ended: December 31, 1998 OR [ ] TRANSITION REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934 For the transition period from ___________ to ______________ Commission file No.: 0-28494 Millennium Pharmaceuticals, Inc. (Exact Name of registrant as Specified in its Charter) Delaware 04-3177038 (State or Other Jurisdiction of (I.R.S. Employer Incorporation or Organization) Identification No.) 640 Memorial Drive, Cambridge, Massachusetts 02139 (Address of Principal Executive Offices) (Zip Code) Registrant's telephone number, including area code: (617) 679-7000 -1- 2 Securities registered pursuant to Section 12(b) of the Act: NONE Securities registered pursuant to Section 12(g) of the Act: Common Stock, $.001 par value Title of class Indicate by check mark whether the registrant (1) has filed all reports required to be filed by Section 13 or 15(d) of the Securities Exchange Act of 1934 during the preceding 12 months (or for such shorter period that the registrant was required to file such reports), and (2) has been subject to such filing requirements for the past 90 days. Yes [X] No [ ] Indicate by check mark if disclosure of delinquent filers pursuant to Item 405 of Regulation S-K is not contained herein, and will not be contained, to the best of registrant's knowledge, in definitive proxy or information statements incorporated by reference in Part III of this Form 10-K or any amendment to this Form 10-K. [ ] The aggregate market value of voting Common Stock held by non-affiliates of the registrant was $983,696,553 based on the last reported sale price of the Common Stock on the NASDAQ Stock Market on March 15, 1999. Number of shares outstanding of the registrant's class of Common Stock as of March 15, 1999: 35,406,467. Documents incorporated by reference: Annual Report to Stockholders for fiscal year ended December 31, 1998 - Part II Proxy Statement for the 1999 Annual Meeting of Stockholders - Part III -2- 3 PART I ITEM 1. BUSINESS GENERAL Millennium Pharmaceuticals, Inc. has a mission -- to build the biopharmaceutical company of the future. Founded in 1993 as a Delaware corporation, Millennium incorporates large-scale genetics, genomics, high throughput screening, and informatics in an integrated life science and technology platform. We apply this technology platform primarily in discovering and developing proprietary therapeutic and diagnostic human healthcare products and services. The terms "Millennium" or the "Company," as used in this document, generally include our subsidiaries. The term "MPI," as used in this document, refers to the parent company exclusively. Millennium's technology platform includes advanced capabilities in genetics, genomics, molecular biology, cell biology, biochemistry, chemistry and analytical instrumentation. Using these capabilities and advanced robotics and informatics technologies, we have created a series of high-throughput processes that we believe have the potential to transform the discovery and development of life-science-based products and services. Our goal is to improve the speed of the discovery and development process and the value of its output, and to lead a change in medical practice through new uses of information across the spectrum of healthcare, from gene discovery to patient care. Millennium pursues multiple business opportunities through groups within MPI and through subsidiaries that specialize in particular areas. The MPI pharmaceuticals division focuses on the development of small-molecule drugs. The MPI technology division focuses on continuing development and integration of the technology platform, on high-throughput processes and services, and on information and informatics technologies that support our strategic alliances and discovery efforts across the entire organization. The Company has two subsidiaries, Millennium BioTherapeutics, Inc. ("MBio") and Millennium Predictive Medicine, Inc. ("MPMx"), both formed in 1997. MBio focuses on developing therapeutic proteins and antibodies, vaccines and gene therapy, and antisense products. MPMx focuses on Diagnomics(TM) (genomics-based diagnostics) and pharmacogenomics (correlation of patient genotypes to drug responses), and on generating and integrating diverse biomedical data to provide products and services to the healthcare industry. Millennium believes that dedicated business units allow us to pursue opportunities with appropriate focus, maintain an entrepreneurial environment, and attract and retain high-caliber employees. We have established formal and informal relationships between the various units to provide for cooperation and collaboration among them and to allow each business unit access to Millennium information, assets and capabilities relevant to that unit's focus area. -3- 4 Millennium's commercialization strategy has been to form strategic alliances with major companies in the pharmaceutical and/or life science marketplaces. Through December 31, 1998, we had formed ten alliances, nine within MPI, and one within MBio. The MPI alliances include two separate alliances with the Wyeth-Ayerst division of American Home Products Corporation ("AHP"), an alliance with Astra AB ("Astra"), an alliance with Bayer A.G. ("Bayer"), two separate alliances with Eli Lilly and Company, ("Lilly"), an alliance with Hoffmann-La Roche Inc. ("Roche"), an alliance with Monsanto Company ("Monsanto"), and an alliance with Pfizer, Inc. ("Pfizer"). MBio is engaged in an alliance with Lilly. In September 1998, Millennium announced the formation of a broad alliance with Bayer. Under the terms of this agreement, Bayer will receive access to key technologies in gene research as well as a flow of genomics-based drug development targets that Millennium discovers through our research efforts. This collaboration contributes to our ability to expand the scope of our drug discovery efforts because it gives Millennium residual rights to develop, on our own behalf, certain products derived from research conducted under the alliance. As part of the agreement, in November 1998 Bayer made an equity investment of $96.6 million in exchange for approximately 4.96 million shares of MPI Common Stock. In February 1999, MPMx formed an alliance with Becton, Dickinson and Company ("Becton Dickinson"). MPMx has agreed to undertake a research program to identify genetic markers and related assays that may be used to develop diagnostic products for several types of cancer. Becton Dickinson has agreed to manufacture and market any products that result, and MPMx will receive a royalty based upon gross profits from related product sales. The agreement is subject to clearance under the Hart Scott Rodino Antitrust Improvements Act. Upon clearance, Becton Dickinson has agreed to make a $15 million equity investment in MPMx in exchange for approximately 11% of MPMx voting stock, as well as an up-front license payment of $3 million. From its inception in 1993 until 1996, Millennium's main focus was on developing our technology platform and on applying this platform to the early stages of drug discovery for important human diseases. Beginning in 1997, we expanded the scope and scale of our operations through the acquisition of ChemGenics Pharmaceuticals Inc. ("ChemGenics") and through establishing MBio and MPMx. Our key objectives in this expansion were to increase our capabilities and involvement in the later stages of drug discovery and to establish new focused business units to pursue additional commercial opportunities. During 1998, we expanded efforts in our subsidiaries as well as in MPI. We hired additional staff in drug discovery, informatics, biotherapeutics, and diagnostics/prognostics as well as in other support areas. Millennium also formed Millennium Information, Inc. ("MInfo") in 1997. MInfo was established to generate and integrate biomedical data and develop information products and services for use by the healthcare industry. During 1998 we reevaluated the market opportunities and business plans -4- 5 for MInfo and MPMx, and determined that the two companies had major areas of common focus. We combined their operations and, in January 1999, merged MInfo with MPMx. MPMx was the surviving corporation of the merger. Collaborations with medical, research, and academic institutions are also critical to our research and technology development success. During 1998, we formed several new collaborations including agreements with the University of Pittsburgh and the University of Texas M.D. Anderson Cancer Center to gain access to clinical samples and tissue collections as well as additional clinical expertise. In addition, MBio established an umbrella material transfer agreement with Harvard Medical School to facilitate collaboration and sharing of novel genes and other biological materials. MPMx also formed a collaboration with the Mayo Clinic that allows us access to clinical samples and tissue collections. In 1997, we established a corporate consortium with Bristol-Myers Squibb Company ("BMS") and Affymetrix, Inc. ("Affymetrix") to fund a five-year research program in functional genomics at the Whitehead Institute/Massachusetts Institute of Technology Center for Genome Research. During 1999, we expect to continue to pursue additional alliances, and will consider joint development, merger, or acquisition opportunities that may provide Millennium with access to products on the market or in later stages of commercial development than those represented within our current programs. BACKGROUND DISCOVERY AND DEVELOPMENT PROCESSES FOR LIFE-SCIENCE-BASED PRODUCTS AND SERVICES SMALL MOLECULE DRUGS TRADITIONAL APPROACH. The great majority of drugs in use today consist of relatively small chemical compounds. Such drugs are often referred to as "small-molecule drugs," to distinguish them from proteins and other biotherapeutic drugs which are significantly larger molecules. Typically, pharmaceuticals can be formulated into pills for oral consumption. Biotherapeutics, on the other hand, typically are only available in injectable form. As used in this document, the term "pharmaceuticals" refers only to pills, or "small-molecule drugs," and the term "biotherapeutics" is used to describe proteins and other biotherapeutic drugs. The discovery of new small-molecule drugs for a particular disease typically involves several steps. The first step is the identification of a drug "target" for therapeutic intervention -- a molecule or structure somewhere in the body, inside or on the surface of cells, which is either directly involved in the disease or lies in a biochemical pathway leading to the disease. The next step is to identify compounds which interact with this drug target and modulate the drug target's activity in a manner that might help reverse, inhibit or prevent the disease process. This step is -5- 6 normally accomplished by screening large collections (or "libraries") of synthetic chemicals and natural products in a trial-and-error process designed to identify those compounds that can interact with the drug target. The most promising compounds to emerge from this process are advanced to the next stage, in which synthetic derivatives of these compounds are generated and tested to arrive at one or a few "lead compounds." The interactions of these lead compounds with the drug target and their activity in animal and/or cellular models of the disease suggest that they could be developed successfully into new drugs. The best of these lead compounds are then subjected to rigorous testing, first in animals and then in humans, to establish their safety and efficacy as drugs. Because of the absence of any suitable technology for the systematic identification and characterization of molecules and structures involved in disease mechanisms, the selection of new targets for drug discovery historically has been a haphazard process. Drug targets have often been selected based on speculation that they might be involved in disease processes, rather than because of any clear, well-documented association with specific diseases. As a result, many drug candidates fail during clinical trials because they turn out to be ineffective and/or unsafe, and many drugs that do reach the market treat only the symptoms of diseases rather than their underlying causes. GENOMICS AND RELATED TECHNOLOGIES. Diseases ultimately have an underlying genetic basis. The initiation, continuation and progression of a disease reflects some aspect of the structure or expression of the patient's genes and/or the genes of a pathogen. Systematic study of human genes in the context of disease should therefore lead to the identification of those genes that play a role in important diseases. These genes, their protein products and/or the biochemical pathways in which they lie should be important drug targets for therapeutic intervention. In the past, however, systematic study of genes in the context of disease has been extremely difficult. Each person carries a very large number of genes on his or her chromosomes - according to current estimates, more than 100,000 different genes (known collectively as the "human genome"). Because of the large numbers of genes, the identification of individual genes or sets of genes correlated with specific diseases has posed major technological challenges. In recent years, this situation has changed dramatically. Fueled by broad interest in determining the entire DNA sequence of the human genome, major improvements have been made in the technologies available for identifying and cataloguing genes in complex organisms. These technologies include high-throughput methods for sequencing genes, for monitoring and comparing their expression in different situations and for following their inheritance in families prone to particular diseases. These technologies depend crucially on the integration of molecular biology with robotics, informatics and analytical instrumentation. The integration of these disciplines provides powerful capabilities for generating, capturing and analyzing large volumes of data concerning genes and their expression, making it possible for the first time to mount a systematic search to discover and characterize the genes and biochemical pathways which -6- 7 underlie human diseases. At Millennium, this search is providing new drug targets with well-validated roles in various diseases. We believe that compounds active against these targets may be highly effective and specific in treating the underlying causes of these diseases. Major advances have also been made in the technologies available for screening synthetic chemical and natural-product libraries to identify compounds active against specific drug targets and for the subsequent generation of lead compounds optimized for their activity against these drug targets. Intelligent integration of robotics, informatics and analytical instrumentation, coupled with novel combinatorial approaches to the synthesis of chemical libraries, has played an enabling role in these advances. We believe that the combined effect of these developments will permit Millennium and others to more rapidly identify higher-quality lead compounds Taken together, these new technologies for selecting drug targets and developing lead compounds may deliver whole new classes of drugs which are safe and effective for treating a broad range of important diseases in diverse individuals. APPLICATIONS FOR BIOTHERAPEUTICS AND PREDICTIVE MEDICINE Genomics and related technologies have major applications in human healthcare beyond the discovery of small-molecule drugs. Key additional applications include the identification of important new biotherapeutic products and the development of novel approaches to the prediction, diagnosis and management of diseases. Biotherapeutics are proteins or nucleic acids administered to patients for therapeutic benefit. Protein biotherapeutics in current use include: secreted proteins, such as interferons, erythropoietin, insulin and human growth hormone; therapeutic antibodies, such as OKT3 and ReoPro(R); and vaccines, such as the vaccine for hepatitis B. In 1998, biotherapeutic products generated over $12 billion in annual worldwide sales. Nucleic acid biotherapeutics fall into two general classes: gene therapy products and antisense products. Although no product in either nucleic acid class has yet reached the marketplace, a number are currently in development. There are multiple ways in which genomics technologies can contribute to the development of novel biotherapeutics. High-throughput gene-discovery programs can lead to the rapid identification of novel genes. Through the use of informatics and functional genomics strategies, these genes and/or their protein products can be identified as potential candidates for therapeutic protein or gene therapy applications or as potential targets for development of therapeutic antibodies, antisense or vaccine-based drugs. In the realm of predictive medicine, genomics technologies can be used to identify genes that predispose individuals to disease, participate in the initiation, progression and resolution of disease and determine individual responses to different treatments that may be available. As a -7- 8 result, the identification of such genes can form the basis for novel strategies and products for the prediction, diagnosis and management of diseases. Millennium believes that improved methods for the discovery of drug targets and the development of lead compounds will lead to safer and more effective new drugs. Efficacy and safety may be enhanced even further by another important application of genomics technologies, referred to as "pharmacogenomics." The goal of pharmacogenomics is to understand why a particular drug may be more effective in some people than in others and/or have more pronounced side effects in certain people. Differences in the way people respond to a drug are believed to reflect genetic differences between them: different people may have slightly different versions of the genes involved in the beneficial and/or the adverse effects of the drug. Millennium believes that genomics technologies will permit the identification of the genetic differences that underlie variability in responses to drugs and that, as a result, it will be possible to individualize the selection of drugs for patients so that each patient receives only those drugs likely to be effective and safe for him or her. OTHER APPLICATIONS The fundamental power of genomics technologies is their ability to identify, in a rapid and comprehensive manner, genes that underlie complex biological traits. In human healthcare, the traits of interest are diseases. Genomics technologies can be successfully applied outside of human healthcare as well. In plant agriculture, for example, these include the yields, nutritional content, disease-resistance and drought-tolerance of crop plants and the susceptibility of pests, pathogens and weeds to agrochemicals. Millennium's alliance with Monsanto employs genomics technologies in the field of plant agriculture. THE MILLENNIUM STRATEGY Millennium's business strategy is to develop a comprehensive, integrated platform of genomics and related technologies and to use this platform to pursue multiple opportunities in life-science-based industries. Our primary focus is on opportunities relating to the discovery and development of new products and services in the healthcare industry. To pursue multiple business opportunities simultaneously, Millennium has established focused units (divisions or subsidiaries) specializing in particular areas, believing that each unit can then address its designated area with the energy and drive of a start-up enterprise. At the same time, we recognize the importance of enabling each unit to take advantage of the combined capabilities of the overall organization. MPI and its two subsidiaries have formed agreements under which each party has assigned or licensed to the other parties' technology and rights in the other parties' core areas of interest. See "-- Millennium BioTherapeutics, Inc. -- Overview" and "-- Millennium Predictive Medicine, Inc. -- Overview." -8- 9 In general, Millennium's strategy for pursuing business opportunities has been to form alliances with major participants in the relevant markets. We focus in these alliances on the discovery of innovative new products, relying on our partners for product development and marketing. Revenues from these alliances come in the form of fixed up-front payments and research funding, with the right to milestone payments and royalties (or a share of profits) based on the success of any products that result from the alliance. Millennium has also formed alliances based on the transfer of aspects of our technology platform to partners. Revenues in such alliances may include up-front payments and fees associated with the successful transfer of technology. In some instances, we have also obtained access to our partners' technologies (such as libraries of chemical compounds) to enhance our operations outside of the alliance. During 1999, we plan to examine opportunities, through acquisition, merger, or new forms of strategic alliances, to allow us to extend our capabilities in clinical development and the commercialization of therapeutic products. We intend to pursue one or more new relationships, consistent with our vision for Millennium's future and our commitment to current alliance partners. We believe that Millennium is well positioned to capture value from a broad array of opportunities in diverse life-science-based industries. TECHNOLOGY PLATFORM Millennium's broad technology platform reflects our strong belief that success in genomics-based product discovery and development requires the use of multiple parallel approaches, accelerated and integrated through the latest advances in informatics and "process technologies" (i.e., automation, miniaturization, and analytical instrumentation). Millennium has established a number of dedicated technology groups responsible for developing and maintaining our technology platform and for supporting the use of this platform by all of the Millennium companies and our strategic partners. GENE IDENTIFICATION GENETIC APPROACHES TO GENE IDENTIFICATION HUMAN GENETICS. Genetic studies of families and populations prone to particular diseases can identify genes involved in these diseases. "Markers" spaced at regular intervals along the human chromosomes are studied in affected and unaffected individuals, a process known as genotyping. If specific markers are co-inherited more frequently in affected than in unaffected individuals, these markers define a chromosomal region (or a "map position") containing a gene or genes involved in the disease. The genes in question may then be identified by some combination of three approaches: higher-resolution mapping (repeating the co-inheritance studies with additional markers known to fall in the region of interest but located more closely to one another than those used for the initial "genome scan"); "positional cloning" (isolation of microbial clones of human -9- 10 DNA corresponding to the map position which has been identified); and high-throughput sequencing (to identify protein-encoding regions (i.e. genes) in the region of interest, and to compare them in normal and affected individuals). To gain access to suitable families and populations around the world, Millennium has formed a number of collaborations with academic centers. Our capabilities in human genetics include the design and proper clinical management of appropriate studies, technology for automated high-throughput genotyping and sequencing, custom-developed software for data capture and analysis, and positional cloning. With these capabilities, Millennium has made significant progress in the mapping and positional cloning of genes implicated in a number of important human diseases. These capabilities in human genetics can be readily adapted and applied to the identification of genes underlying traits of interest in other species - such as diseases in mice, as described below, or economically important traits in plants and animals. MOUSE GENETICS. Genetic studies in mice can often provide faster identification of human disease genes than corresponding studies in humans. This is because genes and diseases in mice are often closely similar to their human counterparts, but the association between them can be studied more rapidly since mice (unlike humans) can be bred rapidly and selectively. To capitalize on the advantages of working with mice, we have built substantial expertise in mouse genetics. This includes the development of proprietary markers, genetic maps, advanced breeding strategies and a significant animal facility. In combination with technologies adapted from our activities in human genetics, this expertise has allowed us relatively rapidly to identify murine (mouse) genes whose human counterparts may play significant roles in important diseases. Examples of such genes and their human counterparts that we have identified include the tub and db/OB-R genes, believed to be important in obesity. MICROBIAL GENETICS. Genetic and genomic studies of microbes, such as bacteria and yeast, are important for two reasons. First, these studies may result in the identification of genes essential for microbial growth, which should provide attractive drug targets for new antibiotics for the treatment of infectious diseases caused by such microbes. Second, such studies can help determine the functions of human genes, many of which have counterparts in microbial systems. In fact, the study of these microbial counterparts is particularly useful because microbial genes are significantly easier to understand and manipulate than human genes. Millennium has developed considerable expertise in genetic investigation and manipulation of a broad range of bacterial and fungal species, including pathogens important for humans, animals and plants. Millennium has employed this expertise to identify a significant number of drug targets in our antifungal and antibacterial research programs. During 1998, the U.S. Patent and Trademark Office issued Millennium two patents relating to a process for the discovery of antimicrobial drug targets. -10- 11 NON-GENETIC APPROACHES TO GENE IDENTIFICATION TRANSCRIPTIONAL PROFILING. Genes contain encoded information instructing cells how to make proteins. Each gene encodes one protein. When the protein is produced, the gene is said to be "expressed." For a protein to be made, the gene must first be transcribed into a copy known as messenger RNA (mRNA). This copy, also called a transcript, then directs synthesis of the encoded protein in a process known as translation. Cells differ from one another because each cell type makes a different spectrum of proteins, and, along the way, a different population of mRNA transcripts. Similarly, diseased cells differ from normal cells by virtue of the spectrum of proteins, and the population of transcripts, which they produce. Comparison of transcript populations in normal and diseased cells and tissues can therefore identify the transcripts, and thus the genes, associated with a particular disease. For this reason, Millennium has developed or accessed a number of powerful approaches for examining and comparing transcript populations in different cells and tissues representing normal and diseased conditions. Many of these approaches involve conversion of mRNA transcripts into DNA copies known as complementary DNA (cDNA), which is easier to handle than mRNA and can be amplified by the polymerase chain reaction (PCR). Increasingly, these approaches involve the use of cDNA "microarrays" (multiple different cDNAs placed in high-density arrays on various surface types) to determine whether samples of interest contain corresponding mRNAs. Crucial to the success of these approaches are customized software tools developed by Millennium for tracking experiments, generating microarrays and capturing and analyzing data. Millennium has applied its transcriptional profiling technologies to identify a number of genes with potentially significant roles in various diseases. For example, we applied transcriptional profiling to identify the gene that encodes melastatin, a protein that appears to suppress metastasis (spreading to other tissue) in malignant melanomas. HIGH-THROUGHPUT SEQUENCING. The information carried within genes to direct the synthesis of proteins resides within the DNA sequences of those genes. Each gene is part of a polymeric chain built from four nucleotide monomers (represented by the letters A, C, G and T). The sequence of these monomers in the chain specifies what protein should be made. Accordingly, to identify and assign function to the large number of genes in the human and other genomes, it is essential to have very high-capacity methods for determining, storing and analyzing DNA sequence information. Millennium has developed comprehensively automated processes for high-throughput DNA sequencing as well as a proprietary suite of software tools for the capture, storage and analysis of large volumes of DNA sequence data (including Millennium's proprietary Sequence Explorer(TM) software package). Millennium uses these capabilities to support multiple approaches to gene discovery, including positional cloning projects in human and mouse genetics programs; sequencing of genomic regions surrounding known genes to identify unknown relatives derived -11- 12 by gene-duplication events; and sequencing of cDNA copies made from mRNAs extracted from various cells and tissues. EXPRESSION CLONING. Among the most interesting proteins in any organism are those that are secreted or that reside on cell surfaces. Secreted proteins often carry signals from one cell/tissue to another. Cell-surface proteins often serve as the receptors for such signals. Most currently approved biotherapeutics are secreted proteins; many current small-molecule drugs and most current antibody therapeutics exert their effects through cell-surface receptors. Millennium has developed high-throughput methodologies specifically to clone genes that encode secreted and cell-surface proteins and is applying these methodologies to identify such genes and proteins in significant numbers. For example, Millennium has used these methodologies in its discovery of the gene that encodes ob-r, the receptor for the hormone leptin, which is a fundamental regulator of weight and appetite. FUNCTIONAL GENOMICS/DRUG TARGET VALIDATION Genes discovered by genetic and non-genetic approaches may already be implicated in a disease or some other biological trait of interest. However, significant additional study is often required in order to establish more precisely the specific functions of these genes and the roles they play in the disease or trait of interest. The process of ascribing function to genes is known as functional genomics. In a pharmaceutical project, the main purpose of functional genomics is to confirm that specific genes or their products may be appropriate targets for new drugs. Such drug "target validation" requires a demonstration that modulating the function of the possible drug target gene (or its product) is likely to have a beneficial therapeutic effect. For non-pharmaceutical applications such as agriculture, the specifics of what is meant by "validation" is different, but the general principle (demonstrating the usefulness of modifying gene function) is the same. Conversion of newly identified genes into validated drug targets or product candidates is a key step in the overall process of genomics-based product discovery. Efficiency and greater productivity at this stage can provide a significant competitive advantage. Accordingly, we have dedicated a substantial portion of our research and development activities to functional genomics and drug target validation, and to methods to increase the throughput and efficiency of these activities. One of the major challenges in functional genomics is quickly to reduce the relatively large numbers of potential drug targets (or product candidates) that typically emerge from a high-throughput gene-discovery program to a relatively small number of high-priority candidates for further investigation. Millennium addresses this challenge with a staged approach, starting with high-throughput techniques that require relatively little effort per gene, then gradually increasing our effort on each potential drug target as the total number of drug targets decreases. -12- 13 The high-throughput techniques used for initial prioritization include computational biology and microarray-based transcriptional profiling. Candidates which appear promising in these initial studies are then evaluated further by approaches, such as histology-based expression profiling, pathway profiling and cellular and animal models, until sufficient information has been gathered to nominate one or more of these candidates as targets for drug discovery or, in the case of non-pharmaceutical projects, as being suitable for further development into products. These techniques are described in greater detail below. COMPUTATIONAL BIOLOGY Using appropriate software tools, it is possible to infer substantial information about a gene's function from its DNA sequence. Information about previously known genes gathered over many years by scientists from around the world can be accessed and analyzed rapidly. Similarities ("homologies") identified between the previously known genes and newly discovered genes provide insight into what functions the new genes may have. Of particular interest are homologies suggesting that a newly discovered gene falls into the same class as genes with known medical or commercial usefulness, such as those encoding the receptors, ion channels and enzymes that are the targets of many current small-molecule drugs. Millennium's Sequence Explorer software provides powerful tools for accessing and interpreting both public and private Millennium databases of DNA sequence information. We are continually developing enhanced computational capabilities for "mining" DNA sequence data in order to extract the function of the gene (and its protein product) encoded by such DNA sequence. BENCH BIOLOGY EXPRESSION PROFILING. Information about where and when a gene is transcribed and translated, and in which cells and tissues and under what circumstances, provides vital clues to the function of that gene. These expression patterns can be determined using a variety of approaches directed towards either the transcription or the translation stage of expression. Ideally, both stages should be monitored, for two reasons. First, not all mRNAs are translated, and it may be important to know which ones are and which ones are not. Secondly, many proteins undergo significant "post-translational" modifications after being synthesized. These modifications cannot be detected by monitoring transcripts and often have crucial effects on the activities of the proteins under investigation. At the mRNA level, expression can be monitored in cells or tissue samples using cDNA microarrays and other transcriptional profiling technologies, as described above. Alternatively, transcripts can be localized more precisely to specific cells and sub-cellular organelles by a technique known as in situ hybridization, which involves the microscopic examination of tissue slices that have been treated to highlight the presence and location of specific transcripts. -13- 14 Similar options are available for monitoring expression at the protein level. The locations of proteins within tissue slices can be determined using specially stained antibodies (a technique known as immunocytochemistry). In addition, the population of proteins present in a cell or tissue extract can be examined using "proteomics," technologies designed to identify all of the different protein species within a cell or tissue sample and/or those protein species which are present in one sample but not in another. Millennium's platform includes an integrated set of technologies for investigating expression patterns at both the mRNA and the protein level, including cDNA microarrays, in situ hybridization and immunocytochemistry. Millennium has also invested significant resources in building an extensive collection of normal and diseased tissue samples in which the expression patterns of genes of interest can be studied. These technologies and tissue samples have contributed significantly to our validation of a number of genes/gene products as targets for drug discovery. We are also actively developing new proteomics technologies to ascertain differences in expression at the level of translated proteins and/or post-translational modification status. PATHWAY PROFILING. Any given property of an organism usually reflects the coordinated activity of a set of genes (proteins) acting in concert, rather than the isolated activity of an individual gene (protein). Stated another way, most processes within an organism take place via pathways in which signals or metabolites are processed in a defined sequence by different proteins acting in succession. Accordingly, each gene emerging from a discovery effort has a two-fold significance. First, it may prove useful as a drug target (or product candidate) in its own right. Secondly, it represents an entry point into a pathway composed of additional, possibly superior, potential drug targets. To take advantage of this latter possibility, appropriate technologies are required for the identification of other proteins in the pathway, a process known as "pathway profiling." Millennium has developed various pathway profiling capabilities, including the use of yeast two- and three-hybrid systems and BIAcore biosensors (technologies which can detect and monitor interactions between different proteins lying in a biochemical pathway) and the application of transcriptional profiling to identify sets of genes transcribed in a coordinated manner, which indicates that they may participate in a common biochemical pathway. CELLULAR AND ANIMAL MODELS. Important information about the function of a gene can be derived by arranging for expression of the gene to be blocked, or for that gene to be expressed in specific cells or tissues, or in the organism as a whole, at levels higher or lower than usual. For experiments of this type, Millennium has developed significant expertise in the construction and utilization of specialized gene-delivery systems, and in the generation of transgenic and knockout microbes and mice. A "transgenic" organism is one carrying a gene from another species. A "knockout" organism is one in which a particular gene has been disabled. Millennium also has broad experience in a variety of the biochemical and cell-biology assays required to interpret such experiments. INFORMATICS AND ADVANCED PROCESS TECHNOLOGIES -14- 15 Successful application of genomics to the discovery of new drugs and other products requires the simultaneous deployment of multiple different technologies across a broad array of experimental procedures. This multi-disciplinary approach presents numerous challenges, ranging from the diversity and complexity of the overall process to the sheer volume of data to capture and interpret. To address these challenges, Millennium places a heavy emphasis on the use of advanced informatics and process technologies to integrate and accelerate the many diverse activities of its genomics programs. Accordingly, our technology platform includes a number of custom-developed informatics tools, including Sequence Explorer(TM), Expression Explorer(TM), and Sample Manager(TM) that enable users to capture, track and interpret large volumes of data from various activities, such as genotyping, DNA sequencing and expression profiling, and to incorporate data from both Millennium's own programs and published sources into their analyses. Our technology platform also incorporates a high degree of automation, controlled in many cases by proprietary software, and advanced capabilities in analytical instrumentation such as fluorimetry and mass spectrometry. APPLICABILITY OF TECHNOLOGY PLATFORM The technologies and processes from gene identification through target validation, and the use of informatics and advanced process technologies, are similar for the development of pharmaceuticals, biotherapeutics, or diagnostic or pharmacogenomic tests. From this point forward in product discovery and development, the processes and methods begin to differ in the different areas. Further discussion of biotherapeutic and diagnostic/pharmacogenomic discovery is in the sections describing MBio and MPMx, respectively. PHARMACEUTICAL DISCOVERY APPROACHES AND DISEASE PROGRAMS OVERVIEW Through the application of our integrated platform of genomics and related technologies, our pharmaceuticals division is engaged in discovering novel drug targets and lead compounds which may be developed into new small-molecule drugs for major human diseases. Such drugs are the mainstay of the traditional pharmaceutical industry. Generally taken orally, they are particularly appropriate for treating chronic diseases that often require the daily administration of medications over many years. PHARMACEUTICAL DISCOVERY APPROACHES HIGH-THROUGHPUT SCREENING In the discovery process for small-molecule drugs, gene products (that is, proteins) which have been validated as suitable targets for therapeutic intervention are configured into screening systems for testing large libraries of compounds to identify those capable of interacting with these drug targets in a useful manner. Various skills are required for success in this process. Each screen must be configured so that it has an easily detectable readout, can be performed economically, is capable of high throughput, is robust enough to process samples of widely -15- 16 differing purity and quality and has appropriate sensitivity and specificity. Implementing the screen then requires diverse skills in sample tracking, automation, data capture and analysis. Millennium's technology platform incorporates a broad range of skills in the configuration of assays and their implementation as high-throughput screens. We are developing technologies, alone and through collaborations, to configure validated targets into screens in a rapid manner. We believe that these technologies will allow us to eliminate a key bottleneck in the discovery process. During 1998, we formed a number of collaborations and entered into various agreements to allow us access to technology we believe will be useful in screening genomic targets. We currently develop assays and perform all high-throughput screening for the antifungal and antibacterial programs, which are the subjects of our collaborations with Pfizer and AHP, as well as for Millennium drug targets. In connection with our alliance with Bayer and with our proprietary drug development programs, in 1999 we expect to expand our capabilities in assay development and configuration. We intend to license technologies others have developed and expand our staffing and other internal efforts in this area. CHEMICAL DIVERSITY Also key to success in drug discovery is the availability of large, diverse libraries of chemical compounds. Ideally, these libraries encompass both synthetic and natural compounds, since both classes are well represented in the population of drugs currently on the market. For its drug-discovery programs, Millennium has secured access to a broad range of chemical compounds and natural products. Our sources of synthetic chemicals include libraries made available by Lilly and AHP under the terms of Millennium's collaborations with these companies (see "-- Strategic Alliances"), novel combinatorial libraries synthesized at Millennium and compounds purchased from various sources. Millennium is currently expanding its efforts to generate additional proprietary synthetic chemistry libraries. We believe that such libraries will be particularly useful sources of pharmacologically active compounds. Millennium's sources of natural products include a proprietary collection of over 50,000 fungal species collected from numerous sites around the world as well as proprietary transgenic fungi. These transgenic fungi are readily culturable fungi, which we have engineered to synthesize compounds, which are normally made only in fungi that are difficult or impossible to culture. These transgenic fungi provide Millennium with access to a rich diversity of naturally occurring compounds which has not previously been accessible to the pharmaceutical industry. During 1997, Millennium was issued a United States patent on an approach for generating novel sources of natural compounds involving crossing two incompatible strains of the fungus Aspergillus, resulting in synthesis of compounds not found in either of the parent strains. DISEASE PROGRAMS -16- 17 BACTERIAL INFECTIONS In the field of bacterial infections, we are engaged in identifying and validating new targets for antibacterial drugs and in high-throughput screening to identify potential lead compounds. MPI has formed a collaboration with AHP in this field. See "-- Strategic Alliances --American Home Products Corporation." Infectious diseases are the third leading cause of death in the United States, and account for 25% of all physician visits. Antibiotics are the second most frequently prescribed class of drugs. Bacterial resistance to antibiotics is a serious problem. For example, drug-resistant pneumococci cause 15,000 cases of meningitis each year in the United States, 7,000 cases of sepsis/bacteremia (blood infections), 150,000 cases of pneumonia and over one million cases of otitis media (ear infections). Between three and 35% of pneumococcal illness is due to drug-resistant strains, depending on geographical location and season of the year. Mortality and hospital length of stay are at least doubled for resistant strains of bacterial organisms compared with strains responsive to treatment. Only one antibiotic, vancomycin, remains effective against hospital-acquired staphylococcal infections. We are applying our expertise in bacterial genetics and genomics to identify significant numbers of genes that are essential for the growth of pathogenic bacteria, to prioritize these genes on the basis of their likely suitability as targets for novel antibacterial drugs and to pinpoint the molecular targets of compounds identified by other means as having antibacterial activity. In each of 1997 and 1998, AHP accepted three novel targets for antibacterial drug discovery. Targets from this program are now at various stages within the drug discovery process ranging from assay configuration, through screening, to optimization of chemical compounds that interact with the target. CARDIOVASCULAR DISEASE Millennium's research program in cardiovascular disease includes projects in atherosclerosis and congestive heart failure. We have formed a strategic alliance with Eli Lilly concerning these projects. See "-- Strategic Alliances-- Eli Lilly and Company." Heart disease has a prevalence in the United States of approximately 18 million individuals. Its major cause is atherosclerosis. Risk factors for atherosclerosis include gender, elevated cholesterol levels, smoking, high blood pressure, diabetes mellitus and severe obesity. Studies indicate that a person's genetic make-up, as indicated by a family history of heart disease, is the single most significant risk factor for early onset of the disease. However, the genetic basis of atherosclerosis remains largely unclear. Approximately five million Americans suffer from heart failure and an additional 500,000 cases are diagnosed annually. The mortality rate from heart disease is extremely high. Few effective therapies are available. More than two million people in the United States suffer from the effects of congestive heart failure (CHF) and approximately 400,000 new cases are diagnosed each year. CHF results from altered cardiac muscle mechanics and function in response to various conditions including: hypertension, valvular heart disease, and heart attacks due to atherosclerosis. The response of the -17- 18 cardiac muscle to these conditions is felt to be largely under the genetic control of several, complex signaling pathways. Therefore, it is thought that by modulating novel molecular targets in heart muscle, CHF may be more effectively treated. MPI's programs in atherosclerosis and CHF use three different approaches to novel gene discovery: human genetics, mouse genetics and expression profiling. The human genetics program is being conducted through collaborations with academic investigators and aims to identify genes responsible for, respectively, early-onset vascular disease and inherited lipid defects in children that promote atherosclerosis in adulthood. Mouse genetic models of both atherosclerosis and congestive heart failure are being used with the goal of identifying genes that modify or protect against developing the disease. Expression profiling approaches are a major gene/target discovery engine in the atherosclerosis and congestive heart failure programs. These studies include an investigation of how biomechanical forces affect gene expression in cells from the walls of blood vessels (atherosclerosis) and how different mechanical or growth factor stimuli affect gene expression in cardiac myocytes (congestive heart failure). Millennium's efforts in atherosclerosis and CHF have led to the discovery of several genes which appear to play a role in protecting blood vessels from the formation of atherosclerotic lesions or in key signaling pathways involved in regulating cell growth, differentiation and migration - processes that are fundamental to the initiation and progression of cardiovascular disease. Five of these genes have been delivered to Lilly for screening against small molecule compound libraries, including four targets in 1998. In 1998, the US Patent and Trademark Office issued Millennium a number of patents relating to genes discovered in our cardiovascular research programs. CENTRAL NERVOUS SYSTEM DISEASES In the field of central nervous system diseases, Millennium is principally using human genetics to identify the genes responsible for affective disorders and schizophrenia and has formed a strategic alliance with AHP. In addition, we are using cDNA approaches to identify genes potentially implicated in the initiation and/or progression of generalized depression, epilepsy and neurodegeneration. See "-- Strategic Alliances -- American Home Products Corporation." Bipolar affective disorder, also known as manic depression, affects at least two million people in the United States, while the related disorder, common depression, may affect up to 13 million persons. Siblings of people affected with bipolar affective disorder appear tenfold more likely to develop the disease than siblings in the general population, suggesting an underlying genetic basis. Schizophrenia is a debilitating disease of the central nervous system that is characterized by severe cognitive impairment, and that affects approximately 2.5 million people in the United States. For its studies on the genetics of bipolar affective disorder, Millennium is collaborating with academic investigators who have access to appropriate populations. Genetic linkages have been identified in these populations, and positional cloning efforts are in progress to identify the disease genes, which these linkages represent. -18- 19 In the area of schizophrenia and schizoaffective disorders, we are collaborating with a consortium of academic clinicians who have access to populations of schizophrenia-prone families that have undergone extensive clinical characterization. Genotyping of individuals in these populations is in progress. FUNGAL INFECTIONS In the field of fungal infections, MPI is engaged in the identification and validation of new targets for antifungal drugs and in high-throughput screening to identify potential lead compounds. We are conducting these activities in a collaboration with Pfizer. See "--Strategic Alliances -- Pfizer." Approximately two million systemic fungal infections (infections involving the bloodstream and/or internal organs) occur annually worldwide. The proportion of hospital-acquired infections in the United States due to fungi (as opposed to other pathogens) nearly doubled from 1980 to 1990, from 6% to over 10% of all such infections. The increasing incidence of systemic fungal infections is due in part to the growing number of patients whose immune systems are compromised due to HIV infection, chemotherapy treatments, increased use of immunosuppressive drugs or aging. Despite current approaches to treatment, the mortality rate in patients with systemic fungal infections is extremely high, ranging from 30% to 80%, depending on the specific fungal infection. Only two major classes of antifungal drugs are in use today, both of which have significant inadequacies. One class of antifungal drugs, which includes Amphotericin-B, while generally effective against Candida, Aspergillus, and Cryptococcus, must be administered intravenously and has serious side effects in many patients. The other major class of antifungal drugs is the azoles. Azoles are well-tolerated and available in orally active forms. However, they are ineffective against important pathogenic species such as Aspergillus. Moreover, strains of fungal infections that are resistant to the azoles have emerged, particularly in patients with AIDS. Using our expertise in fungal genetics and genomics and in lead-discovery technologies, Millennium scientists have identified significant numbers of genes that are essential for the growth of pathogenic fungi. Our scientists have prioritized these genes on the basis of their likely suitability as targets for novel antifungal drugs, configured screens to identify compounds active against the most promising antifungal drug targets and conducted several high-throughput screens of large chemical libraries. These activities have led to the discovery of several series of lead compounds that are the subject of ongoing medicinal chemistry optimization. During 1998, the US Patent and Trademark Office issued Millennium two patents relating to a process for identifying genes essential for a pathogen's survival. We believe that identifying pathogenic survival genes could be an important step in developing novel drugs that can actually kill the pathogen (fungi or bacteria) in question. In contrast, many existing therapeutics merely ameliorate symptoms of the pathogenic disease or slow the growth of the disease-causing organism. INFLAMMATORY RESPIRATORY DISEASES -19- 20 In the field of inflammatory respiratory diseases, Millennium is conducting gene identification and drug target validation activities and has formed a strategic alliance with Astra. See "--Strategic Alliances --Astra AB." Asthma affects approximately 12 million individuals in the United States. Current treatments for moderate to severe asthma, while effective in managing symptoms of the disease, are known to have significant side effects over the long term. Although asthma has both genetic and environmental factors, a number of studies have indicated that asthma is substantially attributable to a genetic component. Millennium currently is undertaking several projects in the field of inflammatory respiratory diseases through human genetics and cDNA approaches. The human genetics program is being conducted in appropriate populations in both China and Europe. The cDNA - based programs are focused on identifying key genes that control immunological conditions important in inflammatory respiratory diseases, including asthma. In this program, high throughput gene-expression analysis and rapid validation methods are being used to identify critical regulatory genes in inflammatory pathways. Millennium scientists have also established several animal disease models expressing physiologic and inflammatory disease markers for use in both gene discovery and gene validation. These programs are generating knowledge and information useful in understanding both respiratory and non-respiratory inflammatory diseases. OBESITY In the field of obesity, Millennium is conducting gene identification and drug target validation activities and has formed a strategic alliance with Roche. See "-- Strategic Alliances --Hoffmann-La Roche Inc." Approximately 34 million individuals in the United States may be classified as obese (greater than 30% above ideal body weight). This serious medical condition has limited therapeutic alternatives and can increase the risk of additional serious medical conditions, such as coronary heart disease, certain cancers and type 2 diabetes. Although obesity is believed to have multiple contributing causes, studies of identical twins suggest that genetic factors are a principal cause of the disease. We are currently undertaking several projects in the field of obesity, employing animal models, mouse genetics, human genetics and other components of Millennium's technology platform. These have led to the identification of a number of genes responsible for obesity in animal models or strongly implicated in the disease, including: the gene encoding ob-r, the receptor for the hormone leptin, a fundamental regulator of weight and appetite; the gene encoding tub, which we believe is associated with adult onset diabetes; uncoupling protein homologue (UCPH), which regulates metabolism and energy expenditure; and the gene encoding the melanocortin 4-receptor (MC4-R), a G-protein coupled receptor which is an important regulator of body weight. MPI and Roche have conducted drug target identification, validation and development programs with respect to these and other genes. In addition, through collaborations with academic investigators, we are conducting human genetics studies in appropriate populations in the American Midwest and the rural Anhui province of China. -20- 21 During 1998, Millennium announced that Roche had accepted into its small-molecule screening program two drug targets identified by Millennium, achievements for which Millennium received milestone fees under our strategic alliance agreement with Roche. In addition, the US Patent Office issued Millennium two patents in 1998 related to UCPH. The first relates to the gene encoding UCPH, and the second to a drug screening method. Millennium previously received a U.S. patent relating to diagnostic methods involving UCPH. ONCOLOGY In the field of oncology, Millennium is conducting gene identification and small-molecule drug discovery activities related to mechanisms of drug resistance and angiogenesis (formation of blood vessels within and around tumors) in a variety of cancers, including prostate, breast, lung, colorectal cancer and melanoma. Millennium has a strategic alliance with Lilly in select areas within oncology, including prostate cancer and mechanisms of drug resistance, and has granted rights to discoveries and targets in other areas of oncology to Bayer. See "--Strategic Alliances -- Eli Lilly and Company" and "--Strategic Alliances --Bayer AG." Over one million new cancer cases are reported in the United States annually. Cancers of all types result in over 500,000 deaths in the United States each year, making cancer the second leading cause of death in the United States. In addition to surgery and radiotherapy, there are nearly 50 FDA-approved drug therapies for the treatment of a variety of cancers. Many of these therapies have severe adverse side effects. We are currently undertaking several projects focusing on the areas of hormone-refractory prostate cancer, mechanisms of drug resistance, apoptosis (cell death), early-stage breast, lung and colon cancers, and mechanisms of angiogenesis using both data base mining and cDNA approaches. We are also using expression profiling technologies to identify genes that function in the progression of a variety of different types of cancer. We have collaborations with major medical centers to gain access to tumor samples. Millennium has identified drug target candidates in multi-drug resistant tumors, hormone-refractory prostate cancer and genes implicated in the initiation and progression of melanomas. We have begun drug target validation studies on these genes, including gene transfer into animal models of cancer progression. During 1998, Millennium was issued a U.S. patent relating to two novel caspase genes, which may be involved in the regulation of apopotosis. TYPE 2 DIABETES In its type 2 diabetes research program, Millennium is principally using a gene identification strategy based on human genetics and has formed a strategic alliance with Roche. See "-- Strategic Alliances -- Hoffmann-La Roche Inc." Approximately 14 million persons in the United States are affected by type 2 diabetes, also known as adult-onset or non-insulin dependent diabetes mellitus (NIDDM). The disease is the seventh leading cause of death in the United States. Studies of identical twins indicate that type 2 diabetes is primarily due to genetic factors. This condition is a complex disorder involving a -21- 22 combination of factors, including the inability of certain tissues to respond to insulin and an inability of the pancreas to produce appropriate levels of insulin. Millennium's human genetics studies in type 2 diabetes are designed to identify disease genes involved in both of these disease processes. These studies have led to the mapping of a gene, NIDDM2, which may be associated with the development of a form of adult-onset diabetes linked to low insulin secretion. In November 1996, Millennium and Roche announced the achievement of a research milestone associated with the identification of a gene implicated in the development of type 2 diabetes, and in 1998 Millennium and Roche announced two research milestones associated with genes identified under the collaboration that would move forward into high throughput screening. In 1998 the US Patent and Trademark Office granted Millennium a patent covering a method for identify candidate drugs for the treatment of type 2 diabetes, as well as a patent covering a test to determine whether an individual has, or is at risk for developing, certain forms of type 2 diabetes. OTHER PROGRAMS In addition to the foregoing disease research programs, the Millennium is conducting additional research efforts in the fields of osteoporosis, non-respiratory inflammation and autoimmune diseases, and intends, in connection with the alliance with Bayer, to begin additional efforts in pain, liver fibrosis, hematology, and viral infections during 1999. STRATEGIC ALLIANCES - MPI OVERVIEW In accordance with its overall commercialization strategy, Millennium has formed a number of alliances focused on drug discovery with pharmaceutical partners that have substantial resources and expertise in research, preclinical and clinical development, regulatory issues and marketing. We intend to pursue additional such alliances, as well as other commercialization opportunities through product acquisition, as appropriate. MPI has formed a total of nine strategic alliances. These agreements include alliances based on the transfer of our technology platform, alliances which combine technology transfer with a focus on a specific disease or therapeutic approach, and disease-focused programs under which Millennium conducts research funded by its partners. In each of these alliances, Millennium generally has agreed that, while the alliance is in place, we will not conduct certain research, independently or with any commercial third party, that is in the same field covered by the alliance agreement. Millennium has retained commercialization rights to certain therapeutic and diagnostic applications of the discoveries resulting from these funded research programs. See "-- Retained Commercialization Rights." Each of the agreements governing the strategic alliances is subject to certain contingencies including, in certain instances, early termination rights. In the event that specified additional research, product development and associated regulatory milestones are achieved, our strategic -22- 23 partners will be obligated to make milestone payments to Millennium. Generally, each of these agreements also entitles Millennium to royalties and/or a share of the profits on product sales, which are payable for the longer of the life of the applicable patent or a period of time specified in each agreement. To realize value from its investment in technology development, and to access additional resources for such development, Millennium has agreed to transfer components of its technology platform to its partners as part of certain of its strategic alliances. These alliances are with companies operating primarily in the pharmaceutical and plant agriculture industries. Millennium's alliances with Monsanto, Lilly, Astra, Bayer and AHP, as described below, include significant technology transfer components. In each case, Millennium has granted rights to use, and has undertaken to transfer, certain genomics technologies to its partner, primarily technologies for high-throughput sequencing, informatics and transcriptional profiling. Millennium also made certain commitments to provide continuing support for technology it has transferred. Under certain circumstances, Millennium may receive royalties on certain products in whose discovery or development Millennium technologies have played a role. STRATEGIC ALLIANCES AMERICAN HOME PRODUCTS CORPORATION CENTRAL NERVOUS SYSTEM DISORDERS. In July 1996, the Company formed a strategic alliance with the Wyeth-Ayerst division of American Home Products Corporation to discover and develop targets and assays to identify small molecule drugs and vaccines for treatment and prevention of disorders of the central nervous system. The strategic alliance with AHP consists of three major components: central nervous system ("CNS") disease drug-discovery research, informatics technology and support and technology exchange. In June 1998, Millennium and AHP announced the discovery of a novel gene that regulates the activity of a key ion channel in the brain, that is likely to be involved in CNS disorders. Millennium received a milestone payment in connection with this discovery. Millennium has focused the CNS drug discovery research program with Wyeth-Ayerst on psychiatric disorders including anxiety, depression, schizophrenia, and bipolar disease. The Wyeth-Ayerst division of AHP has been granted exclusive, worldwide, royalty-bearing rights for the development and marketing of any small molecule drugs and vaccines arising from the collaboration for the prevention and treatment of CNS diseases and disorders. Millennium generally retains rights relating to the worldwide development and marketing of antisense drugs and diagnostic products and services arising from the collaboration. Millennium has granted a right of first refusal to AHP with respect to further opportunities for the joint development of non-vaccine therapeutic proteins and gene therapy products in the CNS field identified in the research program. The CNS alliance may continue for up to seven years, through August 2003. AHP has the option to terminate the agreement in September 1999 if Millennium has not met certain research -23- 24 objectives, in September 2000 if Millennium has not met certain objectives with respect to technology transfer, or in September 2001 if Millennium has not met additional research objectives. ANTIBACTERIALS. Through its acquisition of ChemGenics in February 1997, Millennium became engaged in a strategic alliance with AHP to discover novel drug leads for treating bacterial infections in humans. During 1998, AHP accepted three antibacterial drug targets from Millennium for drug candidate screening. As a result, AHP made a milestone payment to Millennium for each drug target and a bonus payment for delivering six drug targets within the first two years of the agreement. The alliance agreement provides AHP with exclusive worldwide royalty-bearing rights to develop and commercialize small-molecule drugs arising from the collaboration for human bacterial diseases other than H. pylori infections. Commencing one year after the end of the research term, Millennium will have certain rights to develop and commercialize Millennium or AHP products arising from the collaboration if AHP is not developing a product from the collaboration with the same activity profile. Under the terms of the alliance, AHP is funding and collaborating with Millennium on a five-year program that is due to conclude in December 2001. AHP has the right to terminate in November 1999 if certain research objectives have not been met by that date. OTHER. Millennium has obtained certain rights to screen its own drug targets against small molecule compound libraries owned by AHP as part of a technology exchange program with AHP. ASTRA AB In December 1995, Millennium and Astra formed a strategic alliance in the field of inflammatory respiratory diseases. The agreement also includes a component of informatics technology and support and technology exchange. In December 1998, Astra and Millennium amended the agreement and extended the alliance until December 2003. Astra has the right to terminate the program in December 2001, and would be obligated to make an early termination payment in that case. The agreement gives Astra exclusive worldwide royalty-bearing rights to develop and commercialize small-molecule drugs in the inflammatory respiratory diseases field based on Millennium's target discoveries arising from the collaboration. Millennium and Astra have agreed to explore opportunities to jointly develop and commercialize therapeutic proteins identified in the research program in the field of inflammatory respiratory diseases. In the absence of an agreement on joint development, Astra has exclusive worldwide rights for therapeutic proteins in the field of inflammatory respiratory diseases delivered by oral inhalation or nasal administration. Millennium and Astra also have agreed to explore opportunities to jointly develop and commercialize antisense drugs identified in the research program. In the absence of an agreement on joint development, Astra has exclusive worldwide rights in the field -24- 25 of inflammatory respiratory diseases for antisense drugs delivered by oral inhalation or nasal administration, as well as co-exclusive worldwide rights in such field for antisense drugs not delivered by oral inhalation or nasal administration. We also have granted Astra a non-exclusive right to use certain genomics technologies. Millennium has retained exclusive rights to all diagnostic and gene therapy applications arising from the strategic alliance research program. -25- 26 BAYER AG In September 1998, Millennium and Bayer formed a strategic alliance in the field of pharmaceutical drug discovery. Together, Millennium and Bayer will pursue a new production-oriented approach to rapidly move compounds toward clinical trials based on genomics research. In November 1998, Bayer made an equity investment of $96.6 million in exchange for approximately 4.96 million shares of Millennium common stock, and Bayer paid Millennium $33.4 million as an up-front licensing fee. Future payments which may be made over the full alliance term include $219 million of ongoing license and research program funding, as well as a potential of up to $116 million of performance payments for delivery of targets. Bayer has the right to cancel the agreement after two and three years if certain minimum target delivery objectives are not met. The primary goal of the alliance is for Millennium to supply 225 drug targets to Bayer over a period of five years. These targets will be relevant for cardiovascular disease, areas of oncology not covered by Millennium's alliance with Lilly, osteoporosis, pain, liver fibrosis, hematology and viral infections. From those identified by the alliance, Bayer will select drug targets for its exclusive use; the remainder will be available to Millennium to use in its own proprietary drug development efforts. In addition, both Millennium and Bayer in certain circumstances have rights to royalty payments on the sale of marketed products. ELI LILLY AND COMPANY In October 1995, Millennium and Lilly formed a strategic alliance in the field of atherosclerosis and in March 1996, Millennium and Lilly formed a strategic alliance in select areas within oncology. The atherosclerosis agreement also includes a component of informatics technology and support and technology exchange. Under the terms of the atherosclerosis agreement, Lilly made an $8.0 million equity investment in Millennium. Lilly also agreed to fund five-year programs of atherosclerosis and cancer research by Millennium starting in, respectively, October 1995 and March 1996. In September 1997, Lilly and Millennium expanded the scope of the atherosclerosis research program to include congestive heart failure. In December 1998, Millennium announced that Lilly had accepted two novel targets for drug candidate screening under the cardiovascular program. This achievement triggered a milestone payment to Millennium. Each of the agreements provides Lilly with exclusive worldwide royalty-bearing rights to develop and commercialize small-molecule drugs and therapeutic proteins and co-exclusive rights to develop and commercialize gene therapy products for atherosclerosis, congestive heart failure or cancer based on our gene discoveries in the alliance research programs. Millennium has retained exclusive rights to all diagnostic and antisense drug applications arising from the strategic alliance research programs. In addition, Millennium has granted Lilly a right of first negotiation with respect to research programs in the cardiovascular area falling outside of the field of atherosclerosis. Lilly has granted Millennium non-exclusive rights to use select combinatorial chemistry libraries and high-throughput screening technologies controlled by Lilly to conduct a limited number of -26- 27 screens with our drug targets to identify product candidates for medical indications other than specific medical indications designated by Lilly as being of strategic importance to Lilly. We have exclusive worldwide rights to develop and commercialize such product candidates. Millennium will be required to pay Lilly royalties on the sale of any products that we may identify using Lilly's combinatorial chemistry libraries. Millennium has also granted Lilly a non-exclusive right to use certain genomics technologies (see "-- Strategic Alliances"). Lilly originally had the right to terminate the atherosclerosis agreement at any time after October 1998. In September 1997, based on achievements in several key areas of the program during its first two years, Lilly waived this right and accelerated its commitment to fund the program for a full five years. In December 1998, Millennium and Lilly agreed to extend the oncology alliance to its full term, through March 2001. Lilly retains the right to terminate its research funding obligations under each agreement under various circumstances. HOFFMANN-LA ROCHE INC. In March 1994, Millennium and Roche formed a strategic alliance in the fields of obesity and type 2 diabetes. Under the terms of a related stock purchase agreement, Hoffmann-La Roche Ltd. (Basel, Switzerland), a Roche affiliate, made a $6.0 million equity investment in Millennium, and agreed to fund a five-year program of obesity and type 2 diabetes research. In 1998, Millennium and Roche announced two research milestones associated with genes identified under the collaboration that would move forward into high throughput screening. The research phase of the collaboration with Roche will conclude in March 1999. The agreement provides Roche with exclusive worldwide royalty-bearing rights to develop and commercialize small molecule therapeutics for obesity and type 2 diabetes based on Millennium's target discoveries arising from the collaboration. Roche has an exclusive royalty-bearing right to develop and commercialize therapeutic proteins, antisense drugs, oligonucleotides and gene therapy for obesity and type 2 diabetes outside of North America. Within North America, Millennium has retained the right to develop and commercialize therapeutic proteins, antisense drugs, oligonucleotides and gene therapy for obesity and type 2 diabetes, subject to Roche's right to co-promote such products. MONSANTO COMPANY In October 1997, Millennium formed a broad five-year collaboration agreement with Monsanto relating to the application of genomics technologies in Monsanto's life-science-based businesses. Efforts under this alliance are under way primarily in MPI's technology division. In connection with this agreement, Monsanto has established a wholly owned subsidiary, Cereon Genomics LLC ("Cereon"), based in Cambridge, Massachusetts. Millennium granted Cereon and Monsanto an exclusive license to use Millennium's genomics technologies in plant agriculture and certain aspects of dairy agriculture and agreed to collaborate exclusively with Cereon and Monsanto in these fields. Millennium agreed not to compete or grant licenses to others in these fields for a period of ten years after the five-year term of the collaboration. Millennium also granted a non-exclusive license to Monsanto to apply Millennium's genomics technologies outside of these fields. -27- 28 Monsanto agreed to pay Millennium $118 million in up-front, licensing and technology transfer fees over the five-year term of the agreement. Monsanto also agreed to pay Millennium up to $100 million over five years for achieving mutually determined research objectives and for the payment of royalties to Millennium on the sale of certain products originating from research conducted by Cereon. Millennium was also granted non-exclusive rights outside the field of agriculture to use certain discoveries and technologies developed within Cereon and Monsanto. Millennium realized $38.2 million in revenues associated with technology transfer and license fees, achievement of mutually agreed-upon research objectives, and facilities services under this agreement in 1998, and $38 million in revenues as an up-front payment in 1997. Monsanto has the right to terminate the agreement in the event that a company with sales exceeding $1 billion in plant agriculture and certain aspects of dairy agriculture acquires more than a specified percentage of the combined voting power of Millennium's outstanding securities or acquires all or substantially all of Millennium's assets. PFIZER Through its acquisition of ChemGenics, Millennium also became engaged in a strategic alliance with Pfizer to discover novel drug leads for treating fungal infections in human. Under the terms of this alliance, Pfizer is funding and collaborating with Millennium on a program of antifungal research. This agreement, scheduled to conclude in December 1998, was amended in December 1998 and extended through December 2000. The agreement provides Pfizer the option to acquire exclusive royalty-bearing worldwide rights to develop and commercialize products to treat human fungal infections discovered as part of the collaboration. If the option is not exercised for a particular candidate product and Pfizer is not developing another product with a similar profile of activity arising from the collaboration, Millennium will be permitted under certain circumstances to develop and commercialize that candidate itself or with third parties. If Millennium or a Millennium licensee sells any such product, we may be required to make a royalty payment to Pfizer. RETAINED COMMERCIALIZATION RIGHTS Millennium has retained a broad range of rights to commercialize certain therapeutic and diagnostic applications of discoveries resulting from the disease-focused research programs funded by its strategic partners. These retained rights fall broadly into three categories: small-molecule drugs, biotherapeutics and diagnostics. In each of its strategic alliances, Millennium has retained the co-exclusive right to use the molecular drug targets that result from the funded research programs to identify and develop small-molecule drugs to treat medical indications that fall outside of the field(s) covered by the alliance from which the target originated. We are using a number of these drug targets and retained rights as the basis for additional drug-discovery programs either on our own behalf or in alliances with other current or future partners. -28- 29 Millennium has also retained certain exclusive or co-exclusive rights to develop and market therapeutic proteins and antibodies, vaccines and gene therapy and antisense products stemming from discoveries made in MPI's disease-focused drug-discovery alliances. These rights have been transferred to, and are being used by, our MBio subsidiary. Millennium has retained rights to develop and market diagnostic products and services resulting from the research programs conducted by MPI under the strategic alliances with AHP, Astra, Bayer, Lilly, Roche, and Pfizer. These rights have been transferred to, and are being used by MPMx. MILLENNIUM BIOTHERAPEUTICS, INC. Millennium BioTherapeutics, Inc. (MBio) was founded in May 1997 to leverage the MPI genomics and informatics technology platform toward the discovery of new biotherapeutic drugs. As of March 1, 1999, MBio had approximately 80 full-time employees and was contracting with other units within MPI for the services of approximately 40 additional full-time equivalent employees. MBio's core field is biotherapeutic drugs including therapeutic proteins, therapeutic antibodies, gene therapy, antisense therapy, and vaccine products. MPI owns approximately 82% of MBio's voting stock, and Lilly, which made a $20 million equity investment in MBio in 1997, owns 18% of MBio's voting stock. MBio's initial focus is protein and antibody product discovery efforts. MBio's protein discovery efforts include a genomics-based program that is funded in part by Lilly, working toward identification of therapeutic protein drugs, as well as programs for identification of therapeutic protein opportunities that are exclusive of MBio's relationship with Lilly. MBio's antibody discovery effort is focused on novel antibody drugs in the fields of inflammation and oncology. Potential product opportunities in gene therapy, antisense, and vaccine products may emerge indirectly from our protein and antibody discovery efforts. We intend to attempt to exploit these opportunities by selling rights to assist in funding MBio's efforts in discovery and development of protein and antibody drugs. MPI has generally agreed to transfer to MBio all product development opportunities and technology rights (including opportunities and rights arising under our collaboration agreements) in MBio's core area of interest which focuses on biotherapeutic proteins and antibodies, vaccines, and gene therapy and antisense products. Reciprocally, MBio has generally agreed to transfer to MPI all product development opportunities and technology rights outside MBio's core area of interest. MPI has also granted to MBio a royalty-free, non-exclusive license to MPI's process technologies and a royalty-free, exclusive license to certain product-related technology, in each case within MBio's core area of interest. Similarly, MBio has granted to MPI a royalty-free, non-exclusive license to MBio's process technologies and a royalty-free, exclusive license to certain product-related technology, in each case outside MBio's core area of interest. In addition, there are agreements providing for contracting of research and administrative services. MBio intends -29- 30 to continue to contract with MPI for certain research services (e.g., DNA sequencing) and certain administrative services. BIOTHERAPEUTICS Biotherapeutics fall into five main product classes: therapeutic proteins, therapeutic antibodies, gene therapy products, antisense products and vaccines. Most therapeutic proteins now available are produced from cloned genes. These proteins may represent biotechnology's biggest contribution to date to human healthcare. Examples of therapeutic protein products include: Humulin(R) (human insulin); Humatropin(R) (human growth hormone); Neupogen(R) (granulocyte colony-stimulating factor, G-CSF); Epogen(R) (erythropoietin); Intron-A(R) (interferon alpha); Betaseron(R) and Avonex(R) (interferon beta); Kogenate(R) (factor VIII); Activase(R) (tissue plasminogen activator, TPA); and Ceredase(R) (glucocerebrosidase). Therapeutic proteins are often divided into two main categories. The first category, which may be termed "replacement therapies," consists of proteins which supplement or replace proteins whose absence or deficiency is an underlying cause of the disease in question. Examples include glucocerebrosidase in Gaucher's disease and factor VIII in hemophilia. The second category, which may be termed "pharmacologic therapies," consists of proteins which stimulate natural processes within the body for therapeutic effect, but whose absence is not an underlying cause of the disease. Examples of pharmacologic therapies include G-CSF, which stimulates the regeneration of neutrophils following cancer chemotherapy, thereby protecting patients against infection, and TPA, which stimulates the breakdown of dangerous blood clots in heart-attack and stroke patients. MBio believes that genomics technologies will enable the identification of many new potential products in both of these categories. Therapeutic uses of antibodies are based on the unique ability of antibodies to recognize and bind potently to specific molecular shapes. In some cases, the antibody targets a protein or process in the body, which will otherwise have adverse effects. For example, by blocking the aggregation of platelets, ReoPro(R) inhibits potentially dangerous blood clotting after angioplasty. In other cases, the antibody binds specifically to the surface of unwanted cells, such as tumor cells, and initiates the destruction of these cells by the body's immune system. In an alternative but similar approach, a toxin or radioactive label is coupled with the antibody and used to destroy the unwanted cells. MBio believes that genomics technologies will enable the identification of a new generation of targets whose neutralization or recognition by antibodies could have a beneficial therapeutic effect. Gene therapy consists of the administration to a patient of a gene that encodes a protein having a therapeutic benefit. Gene therapy may have potential advantages in situations in which there is a need for prolonged administration of therapeutic proteins or for their delivery only to defined sites within the body. For example, a protein that is chronically deficient in a particular disease might be provided by relatively infrequent administration of the gene encoding that protein, rather than by frequent intravenous or subcutaneous administration of the purified protein. Alternatively, a disease might most appropriately be treated by localized administration of a -30- 31 specific protein to a particular organ system, which is difficult to achieve with injectable proteins but expected to be achievable by gene therapy. MBio believes that genomics technologies will be successful in enabling the identification of many genes that will be good candidates for use in gene therapy products. Antisense therapy can be viewed as the opposite of gene therapy. Instead of providing a gene that encodes a protein whose effect is beneficial, the goal of antisense therapy is to block the activity of a gene that encodes a protein whose effect is harmful. The gene's activity is blocked using a synthetic DNA- or RNA-like molecule which by virtue of its sequence is capable of binding to mRNA transcripts copied from the gene. This binding prevents translation of the mRNA, and thereby inhibits synthesis of the harmful protein. Genomics technologies have the capability to identify genes and transcripts whose activities it would be beneficial to block. Such genes and transcripts represent potential targets for antisense therapies. A vaccine is a preparation that resembles a pathogen in a way that is sufficient to provoke an immune response, but without causing disease. Vaccination primes the immune system to mount a vigorous response upon subsequent exposure to the pathogen in question, preventing development or progression of the disease that the pathogen causes. Historically, the main targets of vaccines have been infectious diseases. Accordingly, the target pathogens have been viruses and bacteria, such as poliovirus and the bacteria, which cause diphtheria, pertussis and tetanus. More recently, there has been a strong interest in developing both preventive and therapeutic cancer vaccines, for which the target "pathogens" are cancer cells. Whatever the nature of the pathogen, proteins that are present on its exterior surface and unique to the pathogen have the potential to provoke pathogen-specific immune responses. Such proteins therefore represent potential constituents of vaccines. MBio believes that genomics technologies will be useful in identifying such proteins. TECHNOLOGY PLATFORM As applied at MBio, the key components of the technology platform include high-throughput DNA sequencing, advanced informatics technologies including Sequence Explorer(TM) and Expression Explorer(TM), genetic mapping, transcriptional profiling, high-throughput expression cloning, modified retroviral vector technology for gene expression and in vivo functional validation, and generation of transgenic and knock-out mice. In addition, MBio has external agreements to provide transgenic and knockout mice. In addition to technologies obtained through MPI, MBio has expanded its platform to include high-throughput mammalian cell- and yeast-based signal sequence expression cloning technologies, development of a proprietary naive antibody phage display library, and "PLATO", an automated cell panning-based antibody phage display technology for high-throughput generation of antibodies and biological validation of genes through functional knock-out strategies. DISCOVERY PROGRAMS Discovery research efforts at MBio are currently focused on two major product categories, therapeutic proteins and therapeutic antibodies. In the field of therapeutic proteins, MBio has -31- 32 formed a strategic alliance with Lilly. See "-- Strategic Alliances -- Eli Lilly and Company." MBio is not currently engaged in efforts directed specifically to the discovery of gene therapy, antisense or vaccine products, although it anticipates that it may have programs in these areas in the future. MBio's therapeutic protein discovery program includes the Lilly collaboration, which is using cDNA-based sequencing, transcription profiling, and genomic sequencing approaches for gene discovery. At present, MBio has discovered and is engaged in research on approximately 100 priority therapeutic protein candidates in various stages of pre-clinical development. In addition, potential antibody targets have been identified as an outcome of the therapeutic protein discovery effort. The therapeutic focus for MBio's therapeutic antibody efforts is inflammation and oncology. MBio has developed "PLATO", a high-throughput antibody generation platform using phage display technology. "PLATO" allows rapid generation of single-chain antibodies for use as immunohistochemistry reagents as part of antibody target validation. STRATEGIC ALLIANCES ELI LILLY AND COMPANY. In May 1997, MBio and Lilly formed a strategic alliance in the field of therapeutic proteins. Under the terms of this alliance, Lilly and MBio each provides half of the funding for a research program at MBio to discover candidate therapeutic proteins, and each receives exclusive rights to half of the therapeutic proteins discovered. Therapeutic antibodies and certain other proteins are excluded from the alliance. In conjunction with the formation of this alliance, Lilly made an equity investment of $20 million in MBio, for which it received approximately 18% of MBio's voting stock. In the event that Lilly achieves specified research, product development and associated regulatory milestones in its development of proteins resulting from the alliance, Lilly will be obligated to make milestone payments to MBio. Lilly also will be obligated to pay royalties to MBio on the sale of certain therapeutic products that may result from the alliance. Candidate therapeutic proteins identified in the jointly funded research program which meet certain specified criteria become available for selection by either Lilly or MBio for further development. Each company is entitled to select an equal number of the proteins from the pool of qualified candidates, with the companies taking alternating turns to select candidates for further development. Each company is under obligations of diligence to develop each protein it has selected. Any protein that is not diligently developed may be returned to the selection pool, or be transferred to the other partner. Each company has exclusive worldwide rights, sub- licensable under certain conditions, and royalty bearing in the case of Lilly, to develop and commercialize therapeutic proteins it has selected. MBio and Lilly each has royalty-bearing worldwide rights to use proteins from the jointly funded program as drug targets to discover small-molecule drugs. MBio has transferred these rights to Millennium for use by MPI. Lilly has the right to terminate the research program on its third and its fourth anniversary upon at least 120 days' written notice. Either party may terminate the agreement at any time upon 30 -32- 33 days' written notice if any pharmaceutical or other health care company acquires majority control of the other party. OTHER AGREEMENTS MBio and Abgenix, Inc., an antibody technology company, have entered into a development and commercialization agreement that provides MBio access to Xenomouse(TM) technology for two therapeutic antibody targets. Xenomouse(TM) technology involves a genetically engineered mouse that, when exposed to an antigen, produces human antibodies in response. The genes encoding these human antibodies can be deciphered and used to produce candidate therapeutic antibodies for human use. Under the agreement, MBio maintains all commercial rights to human antibodies generated from the Xenomouse(TM) and will pay Abgenix certain development milestones as well as royalties upon product commercialization. MBio has entered into an agreement with Harvard Medical School that provides MBio with access to various research capabilities. MBio is also participating in academic collaborations established by MPI, and is engaged in a number of consulting, materials transfer, and collaboration agreements with academic investigators and institutions, primarily to allow us access to expertise in validating genes. MBio has also formed several technology acquisition and research collaboration agreements for generation of transgenic and knockout mice, use of phage display technology and use of certain cell lines. MILLENNIUM PREDICTIVE MEDICINE, INC. Millennium Predictive Medicine, Inc. ("MPMx") was founded in September 1997 as a wholly owned MPI subsidiary. The MPMx vision is to change the practice of medicine by developing products and services that place information in the hands of clinicians and pharmaceutical researchers, allowing them to improve decisions about drug treatment and other aspects of patient management. MPMx is applying the Millennium technology platform to discover novel molecular markers of disease and drug effects. As of March 1, 1999, MPMx had approximately 40 full-time employees. MPMx initially is focusing its efforts in diagnostics and in pharmacogenomic services. MPMx's initial commercialization strategy is to seek partners that will provide funding for product research and development and that will have the capability to manufacture and market these products. MPI has generally agreed to transfer to MPMx all product development opportunities and technology rights (including opportunities and rights arising under our collaboration agreements) in MPMx's core area of interest which focuses on Diagnomics(TM), pharmacogenomics and on generating and integrating diverse biomedical data to provide patient management services to the healthcare industry. Reciprocally, MPMx has generally agreed to transfer to MPI all product development opportunities and technology rights outside MPMx's core area of interest. MPI has also granted to MPMx a royalty-free, non-exclusive license to MPI's process technologies and a royalty-free, exclusive license to certain product-related technology, in each case within MPMx's -33- 34 core area of interest. Similarly, MPMx has granted to MPI a royalty-free, non-exclusive license to MPMx's process technologies and a royalty-free, exclusive license to certain product-related technology, in each case outside MPMx's core area of interest. In addition, there are agreements providing for contracting of research and administrative services. MPMx intends to continue to contract with MPI for certain research services and certain administrative services. In February 1999, MPMx announced the formation of an alliance with Becton, Dickinson Company ("Becton Dickinson"). Overall, the alliance will aim to develop tests designed to provide individualized diagnostic and prognostic information, assist in treatment selection for patients with cancer, and improve the prediction of patient healthcare outcomes. MPMx will supply markers which are clinically validated to Becton Dickinson for the following cancers: melanoma, cervical, breast, ovarian, uterine, prostate and colon. MPMx and Becton Dickinson will jointly determine which tests, from among diagnostics and pharmacogenomics, will be developed for each type of cancer included in the alliance. Becton Dickinson will receive exclusive rights to all diagnostic products (with the exception of colon cancer diagnostic products for which it will have co-exclusive rights), and co-exclusive rights to all pharmacogenomic products, developed in the collaboration. The rights to all therapeutic discoveries and to all products outside of the specific cancers included in the alliance will be retained by MPMx. The agreement also provides Becton Dickinson with certain rights of first refusal to commercialize pharmacogenomic products developed by MPMx in connection with drugs to treat these cancers. The agreement is subject to clearance under the Hart Scott Rodino Antitrust Improvements Act. Upon clearance, Becton Dickinson will make a $15 million equity investment in exchange for approximately 11% of the voting stock of MPMx, as well as an up-front license payment of $3 million. Becton Dickinson has agreed to pay MPMx up to $51.5 million in research funding and additional annual license fees over the five-year term of the agreement. Becton Dickinson has also agreed to pay milestones and royalties to MPMx in connection with the commercialization and sale of any products developed through the alliance. Becton Dickinson has the right to terminate the alliance after three years if MPMx fails to meet certain performance objectives. BACKGROUND Despite tremendous advances during the twentieth century, Millennium believes that much medical care is still suboptimal. Many diseases are diagnosed using tests that provide only a snapshot of current symptoms, rather than a predictive assessment of underlying causes. In addition, many diseases are treated with drugs that, while safe and effective in some patients, may be ineffective and even dangerous in others. We believe that genomics and related technologies can make a fundamental contribution to the optimization of medical care by providing tests that report informatively on the underlying causes and likely outcomes of diseases and predict accurately the responses of individual patients to drugs. We also believe that MPMx can gain a competitive advantage in developing such tests and related services through the application of Millennium's integrated platform of genomics and related technologies. -34- 35 Diagnostic products and services generally have shorter product development and regulatory approval time than therapeutic products. Therefore, Millennium believes that products and services developed by MPMx may be among the first arising from our genomics programs to generate sales revenues. DIAGNOMICS(TM) Many current diagnostic tests are directed towards the symptoms, rather than the causes, of the diseases that they are used to diagnose or monitor. As a result, these tests generally provide information only about a patient's current condition. In contrast, Millennium has coined the term "Diagnomics(TM)" to describe genomics-derived molecular diagnostics that assess the underlying causes of diseases rather than just their symptoms. We believe that Diagnomics(TM) products and services will provide information with inherent prognostic, therapeutic and economic implications, enabling a shift in medical care towards planned and cost-effective treatment of the underlying causes of disease. The initial focus for MPMx's Diagnomics(TM) program is in cancer. PHARMACOGENOMICS Different people often respond in different ways to the same drug. A drug that is safe and effective in one patient may be toxic and ineffective in another. MPMx believes that such differences in response reflect genetic differences between the individuals concerned. Pharmacogenomic studies seek to establish correlations between specific genetic variations and specific responses to drugs. By establishing such correlations, pharmacogenomics may permit both new and existing drugs to be targeted to those patients in whom they are most likely to be both effective and safe. MPMx therefore expects that the pharmacogenomics products and services it is developing will enable pharmaceutical companies to accelerate clinical trials, improve the success rate of such trials and realize significant extra value from existing drugs and failed clinical development candidates. MPMx further expects that these products and services will allow healthcare organizations to provide improved patient care at the same or lower cost. MPMx is currently focusing its pharmacogenomics efforts in clinical areas for which there is a strong need for more informed pharmaceutical care. These areas include therapeutic classes for which drug choice has a strong impact on patient outcome, and areas in which a drug that may be very effective and safe for some patients shows potentially life-threatening toxicities for other patients. Examples of the former category include oncology, arrhythmia, and depression; examples of the latter category include hematological toxicity and hepatotoxicity. For the application of pharmacogenomics to drugs in clinical development, MPMx will pursue strategic alliances with pharmaceutical companies as its initial business model. The objective of these alliances will be to discover molecular markers - at the DNA, RNA, or protein level - of either efficacy or toxicity associated with specific drugs. Such markers may be used for assessing predisposition to efficacy or toxicity or improved assessment of drug response post-administration. Resulting pharmacogenomic tests are expected to improve clinicians' ability to use those drugs in patient management (i.e. the right drug for the right patient). In addition, a pharmacogenomic approach to drug development may improve efficiency by allowing pre-selection of positive responders. -35- 36 RESEARCH AND DEVELOPMENT DIAGNOMICS(TM) The two main phases of the Diagnomics(TM)research program are marker discovery and marker validation. Markers are genes or gene products that are identified with and can be used, in an assay, to diagnose or monitor a particular disease or disease condition. In general, marker discovery involves acquiring and preparing samples, preparing representative cDNA libraries, constructing subtracted libraries, and array profiling. Marker validation involves selection of a subset of candidate markers that are over- or under-expressed in test tumor samples; assay formatting as appropriate; and clinical validation using patient samples. In addition to the research funded by the oncology Diagnomics(TM) alliance with Becton Dickinson, MPMx may conduct internally funded research to position ourselves for further diagnostics collaborations. Millennium owns two issued U.S. patents relating to the gene that encodes melastatin, a protein that appears to suppress metastasis in malignant melanomas. MPMx has a license under these patents for the development of Diagnomics(TM) products and services. PHARMACOGENOMICS MPMx has preliminary plans to develop a pharmacogenomics research program in oncology. The program would involve laboratory-based discovery (including bioinformatics analyses), bioinformatics-based discovery, and clinical validation. RESEARCH AND DEVELOPMENT Millennium's total research and development expenses were $114.2 million, $74.8 million, and $34.8 million for 1998, 1997 and 1996, respectively. Revenues under collaborative research and development agreements totaled $133.7 million, $89.9 million, and $31.8 million in 1998, 1997, and 1996, respectively. SIGNIFICANT CUSTOMERS Substantially all of Millennium's revenues are derived from our strategic alliances. In 1998, revenues from our strategic alliances with Bayer, Monsanto, Lilly, and AHP accounted for approximately 25%, 29%, 15% and 15%, respectively, of the Company's total revenues. Millennium has three alliances with Lilly and two alliances with AHP. A loss of any of these strategic alliance partners could have a material adverse effect on the Millennium's business, financial condition and results of operations. See "-- Strategic Alliances " and "-- Factors That May Affect Results -- Reliance on Strategic Partners." PATENTS AND PROPRIETARY RIGHTS As of March 1, 1999, Millennium and its subsidiaries own, or are the exclusive licensee under, more than 500 pending U.S. and international patent applications and 25 issued U.S. patents. Millennium seeks United States and international patent protection for the genes, proteins and -36- 37 small molecule drug leads that it discovers, as well as therapeutic, diagnostic and pharmacogenomic products and processes, drug screening methodologies, transgenic animals and other inventions based on such genes, proteins and small molecules. Our commercial success will depend in part on obtaining such patent protection. We also intend to seek patent protection or rely upon trade secret rights to protect certain other technologies which may be used to discover and characterize genes, proteins and small molecules and which may be used to develop novel therapeutic, diagnostic and pharmacogenomic products and processes. The patent positions of pharmaceutical, biopharmaceutical and biotechnology companies, including Millennium, are generally uncertain and involve complex legal and factual questions. There can be no assurance that any of Millennium's pending patent applications will result in issued patents. We cannot assure that Millennium will develop additional proprietary technologies that are patentable, or that any patents issued to either Millennium or our strategic partners will provide a basis for commercially viable products. We cannot assure that any issued patents will provide us with any competitive advantages or will not be challenged by third parties, or that the patents of others will not adversely affect our ability to do business. In addition, patent law relating to the scope of claims in the technology fields in which Millennium operates is still evolving, and the extent of protection for our proprietary discoveries is therefore uncertain. We cannot assure that others will not independently develop similar or alternative technologies, duplicate any of our technologies, or design around the patented technologies that we develop. In addition, others may discover uses for genes, proteins and small molecules other than those uses covered in our patents and patent applications, and these other uses may be separately patentable. It is possible, therefore, that we could be excluded from selling a product for which we have a composition of matter claim if another party were to hold a patent covering the use of a product of that same composition. Millennium has applied for patent protection for novel, full-length genes, partial gene sequences of novel genes and novel uses for known genes identified through its research programs. There has been and continues to be uncertainty regarding the patentability of partial gene sequences and full-length genes absent functional data and the scope of patent protection available for full-length genes and partial gene sequences. Based on recent technological advances in gene sequencing technology, a number of groups other than Millennium are attempting to rapidly identify gene sequences, whose functions have not been characterized. Washington University (in conjunction with Merck & Co., Inc.) and The Institute for Genomic Research (in collaboration with the National Center for Biological Information) have made certain gene sequences available in publicly accessible databases. It is possible that these and other similar disclosures could adversely affect our ability to obtain patent protection for full-length genes claimed in subsequent patent applications. We routinely conduct searches of publicly available databases to determine whether other parties have previously identified gene sequences corresponding to the various partial gene sequences and full-length genes that Millennium has discovered. To the extent any patents issue to other parties on such gene sequences, the risk increases that Millennium's or Millennium's partners' potential products and processes may give rise to claims of patent infringement. -37- 38 Others may have filed and in the future are likely to file patent applications covering inventions that are similar or identical to those we have filed. We cannot assure that any such patent application will not have priority over patent applications we have filed. We believe that certain of our patent applications cover genes that may also be claimed in patent applications filed by other parties. Interference proceedings before the USPTO may be necessary to establish which party was the first to invent a particular gene. Our potential products and services may conflict with patents that have been or may be granted to competitors, universities or others. As the biotechnology and biopharmaceutical industries expand and more patents are issued, the risk increases that our potential products and services may give rise to claims that they infringe the patents of others. Other parties could bring legal actions against Millennium or our strategic partner claiming damages and seeking to enjoin clinical testing, manufacturing and marketing of the affected products and services. If any such actions are successful, in addition to any potential liability for damages, Millennium or our strategic partner could be required to obtain a license in order to continue to manufacture or market the affected products and processes. We cannot assure that we or our strategic partners would prevail in any such action or that any license required under any such patent would be made available on commercially acceptable terms, if at all. We believe that there will continue to be significant litigation in the industry regarding patent and other intellectual property rights. If Millennium becomes involved in such litigation, it could consume a substantial portion of the our managerial and financial resources. There is substantial uncertainty concerning whether human clinical data will be required for issuance of patents for human therapeutics. If such data is required, our ability to obtain patent protection could be delayed or otherwise adversely affected. Although the USPTO issued new utility guidelines in July 1995 that address the requirements for demonstrating utility for biotechnology inventions, particularly for inventions relating to human therapeutics, utility will be determined on a case-by-case basis. Moreover, we cannot assure that the USPTO's position will not change with respect to what is required to establish utility for biotechnology inventions. Millennium relies upon trade secret protection for its confidential and proprietary information. We believe that we have developed proprietary technology for use in gene discovery and characterization, including proprietary genetic marker sets, proprietary software (including proprietary software for the capture, storage and analysis of DNA and protein sequence data) and an integrated informatics system. We have not sought patent protection for many of these technologies. In addition, Millennium has developed databases of proprietary gene sequences and biological information, which are updated on an ongoing basis. We have taken security measures to protect our data and we continue to explore ways to further enhance data security. We cannot assure, however, that such measures will provide adequate protection for our trade secrets or other proprietary information. While we require employees, academic collaborators and consultants to enter into confidentiality agreements, we cannot assure that proprietary information will not be disclosed, that others will not independently develop substantially equivalent proprietary information and techniques or otherwise gain access to our trade secrets or disclose such technology, or that we can meaningfully protect our trade secrets. -38- 39 Millennium's academic collaborators have certain rights to publish data and information in which we have rights. While we believe that the limitations on publication of data developed by its collaborators pursuant to its collaboration agreements will be sufficient to permit Millennium to apply for patent protection, there is considerable pressure on academic institutions to publish discoveries. We cannot assure that such publication would not affect our ability to obtain patent protection for some inventions in which we may have an interest. Millennium is a party to various license agreements that give us rights to use certain technologies in our research and development processes. We cannot assure that we will be able to continue to license such technology on commercially reasonable terms, if at all. Our failure to maintain rights to such technology could have a material adverse effect on our business, financial condition and results of operations. GOVERNMENT REGULATION Millennium is applying its technologies to the discovery and development of therapeutic and diagnostic products including: small-molecule drugs, biotherapeutic proteins and antibodies, vaccines, gene therapy and antisense products and genomic-based and proteomic-based diagnostic and pharmacogenomic products. The FDA in the United States, comparable authorities in other countries, will regulate Millennium and our proposed products in a variety of ways. These regulatory authorities and other federal, state, and local entities apply to, among other things, the preclinical and clinical testing, safety, effectiveness, approval, clearance, manufacture, labeling, marketing, export, storage, record keeping, advertising, and promotion of our proposed products. FDA approval or clearance of our proposed products, including a review of the manufacturing processes and facilities used to produce such products, will be required before such products may be marketed in the United States. The process of obtaining approvals or clearance from the FDA can be costly, time consuming, and subject to unanticipated delays. There can be no assurance that approvals or clearances of our proposed products, processes, or facilities will be granted on a timely basis, or at all. Moreover, if Millennium fails to obtain approval or clearance, we would be unable to market the proposed products. If approvals are delayed, our ability to market proposed products would be adversely affected. Approval or clearance may include significant limitations on indicated uses for which a product could be marketed. In addition, the product approval or clearance could be subject to suspension or withdrawal under certain circumstances. Any diagnostic testing products that Millennium may develop will be regulated in the United States as medical devices. Prior to introduction into interstate commerce, medical devices must be found "substantially equivalent" to a legally marketed Class I or Class II device or to a Class III device for which the FDA has not required premarket approval. In order to demonstrate substantial equivalence, a manufacturer must submit a premarket notification (510(k)) under section 510(k) of the Food Drug and Cosmetic Act (the Act). FDA may require additional data to support a substantial equivalence determination, and there is no assurance FDA will find a device substantially equivalent. If FDA finds that a device is not substantially equivalent, the manufacturer may ask the FDA to make a risk-based classification to place the device in Class I -39- 40 or Class II. However, if a timely request for risk-based classification is not made, or if FDA determines that a Class III designation is appropriate, an approved premarket approval application (PMA) will be required before the device may be marketed. The PMA approval process is lengthy, expensive, and typically requires, among other things, extensive data from pre-clinical testing and a well-controlled clinical trial or trials that demonstrates a reasonable assurance of safety and effectiveness. There is no assurance that review will result in timely or any PMA approval, and there may be significant conditions of approval, including limitations on labeling and advertising claims and the imposition of post-market testing, tracking, or surveillance requirements. In addition, although diagnostic devices are exempt from investigation device exemption (IDE) approval requirements for clinical trials under certain specified circumstances, FDA may notify a sponsor that an approved IDE is required before clinical trials may commence. If FDA requires an approved IDE, there is no guarantee that the agency will approve the IDE, and an IDE approval process could result in significant delay. Certain devices may be exempt from premarket notification, but other regulatory requirements will apply, including the Food, Drug and Cosmetic Act's general controls, for example, the Quality System Regulations governing current good manufacturing practices (cGMP) and enforced with periodic inspections, the Medical Device Reporting (MDR) requirements, and the adulteration and misbranding provisions of the Act.. Permission to market may be suspended or withdrawn if compliance with regulatory standards is not maintained or if problems occur following initial marketing. The MDR regulations require that reports be submitted to FDA to report device-related deaths, serious injuries, and malfunctions the recurrence of which would likely cause serious injury or death. MDRs can result in agency action such as inspection, recalls, and patient/physician notifications, and are often the basis for agency enforcement actions. Because MDRs are publicly available, they can also become the basis for private tort suits, including class actions. Depending on their significance, MDRs could have a material adverse effect on Millennium's business, financial condition, results of operations, and ability to market its products. If a manufacturer makes a change to a device cleared for marketing under section 510(k) that is a major change in intended use, or is a change to design, material, composition, energy source, or manufacture that could significantly affect the safety and effectiveness of the marketed device, a new 510(k) will be required before the modified device may be marketed. Changes to approved PMA devices that affect safety and effectiveness require supplemental PMA approvals before the modified PMA device may be marketed. Failure to obtain timely or any approval for changes to marketed devices could have a material adverse effect on Millennium's business, financial condition, and results of operations. The process required by the FDA before drug or biological products may be approved for marketing in the United States generally involves (i) preclinical laboratory and animal tests, (ii) submission to the FDA of an IND, which must become effective before clinical trials may begin, (iii) adequate and well- controlled human clinical trials to establish the safety and efficacy of the -40- 41 product for its intended indication, (iv) submission to the FDA of a marketing application and (v) FDA review of the marketing application in order to determine, among other things, whether for a new drug, the product is safe and effective for its intended uses or whether, for a biological product, the product is safe, pure and potent, and the facility in which it is manufactured, processed, packed or need meets standards designed to assume the products continued safety, priority, and potency. There is no assurance that the FDA review process will result in product approval on a timely basis, or at all. An IND is a submission which the sponsor of a clinical trial of an investigational new drug or biological product (such as a vaccine) must make to the FDA, and which the agency must allow to become effective before clinical trials may commence. The IND submission must include, among other things preclinical testing; a description of the sponsor's investigational plan; protocols for each planned study; chemistry, manufacturing, and control information; pharmacology and toxicology information; and a summary of previous human experience with the investigational drug or biological product. A New Drug Application ("NDA") is an application to the FDA to market a new drug. A Biologics License Application ("BLA") is an application to the FDA to market a biological product. An NDA or BLA, depending on the submission, must contain, among other things, information on chemistry, manufacturing controls and potency and purity; nonclinical pharmacology and toxicology; human pharmacokinetics and bioavailability; and clinical data. The new drug or biologic may not be marketed in the United States until the FDA has approved the NDA or BLA, as the case may be. In addition, for both NDAs and BLAs, the application will not be approved until the FDA conducts a manufacturing inspection and approves the applicable manufacturing process for the drug or biologic. Preclinical tests include laboratory evaluation of product chemistry and animal studies to gain preliminary information about a product's pharmacology and toxicology and to identify any safety problems that would preclude testing in humans. Products must generally be manufactured according to cGMP and preclinical safety tests must be conducted by laboratories that comply with FDA regulations regarding good laboratory practices. The results of the preclinical tests are submitted to the FDA as part of an IND and are reviewed by the FDA prior to the commencement of human clinical trials. Unless the FDA objects to, or makes comments or raises questions concerning, an IND, the IND will become effective 30 days following its receipt by the FDA and initial clinical studies may begin, although companies often obtain affirmative FDA approval before beginning such studies. There can be no assurance that submission of an IND will result in the ability to commence clinical trials. Clinical trials can involve the administration of the investigational new drug or biologic to healthy volunteers and to patients under the supervision of a qualified principal investigator. Clinical trials must be conducted in accordance with the FDA's Good Clinical Practice requirements under protocols that detail, among other things, the objectives of the study, the parameters to be used to monitor safety, the effectiveness criteria to be evaluated and a statistical plan to evaluate the study results. Each protocol must be submitted to the FDA as part of the IND. Further, each clinical study must be conducted under the authority of an Institutional -41- 42 Review Board ("IRB"). The IRB will consider, among other things, ethical factors, the safety of human subjects, the possible liability of the institution and the informed consent disclosure which must be made to participants in the clinical trial. Clinical trials are typically conducted in three sequential phases, although the phases may overlap. During Phase I, when the drug or biologic is initially administered, often to healthy human subjects, the product is tested for safety, dosage tolerance, absorption, metabolism, distribution, and excretion. Phase II involves studies in a limited patient population to (i) evaluate preliminarily the efficacy of the product for specific, targeted indications, (ii) determine dosage tolerance and optimal dosage, and (iii) identify possible adverse effects and safety risks. When a new product is found to have an effect and to have an acceptable safety profile in Phase II evaluation, Phase III trials are undertaken in order to further evaluate clinical efficacy and to further test for safety within an expanded patient population. The FDA may place clinical trials on hold at any point in this process, among other reasons, if it concludes that clinical subjects are being exposed to an unacceptable health risk. The results of the preclinical studies and clinical studies, the chemistry and manufacturing data, and the proposed labeling, among other things, are submitted to the FDA in the form of an NDA or BLA, approval of which must be obtained prior to commencement of commercial sales. The FDA may refuse to accept the NDA or BLA for filing and substantive review if certain administrative and content criteria are not satisfied, and even after accepting the NDA or BLA for review, the FDA may require additional testing or information before approval of the NDA or BLA. In any event, the FDA must deny an NDA or BLA if applicable regulatory requirements are not ultimately satisfied. Moreover, if regulatory approval of a product is granted, such approval may be made subject to various conditions, including post-marketing testing and surveillance to monitor the safety of the product, or may entail limitations on the indicated uses for which it may be marketed. Finally, product approvals may be withdrawn if compliance with regulatory standards is not maintained or if problems occur following initial marketing. In November 1997, Congress amended the Food and Drug Modernization Act of 1997 and eliminated certain previously required filings including Product License Applications (PLAs), which were previously required to market biologic products, and Establishment License Applications (ELAs), which were previously required to obtain biologic manufacturing establishment licenses. All biologic products are now subject only to the BLA process. The FDA has proposed regulations to implement BLAs. Although the FDA's intent in promulgating new regulations for biologics has been, in part, to lessen the burdens of the regulatory approval process, there can be no assurance that any new regulations, will have the effect of reducing review times. Changes to approved drug and biological products that affect safety or effectiveness require approved supplemental applications, as do changes in manufacturing that have a substantial potential to adversely affect product safety or effectiveness. Such supplemental applications must be approved before the product may be marketed as modified. -42- 43 Both before and after approval or clearance is obtained, a product, its manufacturer, and the sponsor of the marketing application for the product are subject to comprehensive regulatory oversight. Violations of regulatory requirements at any stage, including the preclinical and clinical testing process, the approval or clearance process, or thereafter (including after approval or clearance) may result in various adverse consequences, including FDA delay in approving, clearing or refusal to approve or clear a product, or suspension, revocation or withdrawal of an approval or clearance. Violations of regulatory requirements may also result agency enforcement actions including voluntary or mandatory recall, seizure of products, fines, injunctions and/or civil or criminal penalties. In addition, the nature of marketing claims that Millennium will be permitted to make in the labeling and advertising of its products will be limited to those specified in an FDA clearance or approval, and claims exceeding those that are cleared or approved will constitute violation of the Act. Millennium's advertising of its products will also be subject to regulation by the Federal Trade Commission (FTC) under the FTC Act. The FTC Act prohibits unfair methods of competition and unfair or deceptive acts in or affecting commerce. Violations of the FTC Act, such as failure to have substantiation for product claims, would subject Millennium to a variety of enforcement actions, including compulsory process, cease and desist orders, and injunctions. FTC enforcement can result in orders requiring, among other things, limits on advertising, corrective advertising, consumer redress, and recision of contracts. Violations of FTC enforcement orders could result in substantial fines or other penalties. Whether or not FDA approval has been obtained, approval of a therapeutic product by comparable government regulatory authorities in foreign countries must be obtained prior to marketing such product in such countries. Further, applicable FDA export requirements must be met. The approval procedure varies from country to country, and the time required may be longer or shorter than that required for FDA approval. Although there are some procedures for unified filing for certain European countries, in general, each country has its own procedures and requirements. In addition to regulations enforced by the FDA, Millennium also is subject to regulation under the Occupational Safety and Health Act, the Environmental Protection Act, the Toxic Substances Control Act, the Resource Conservation and Recovery Act and other present and potential future federal, state or local regulations. Millennium's research and development involves the controlled use of hazardous materials, chemicals and various radio active compounds. Although we believe that our safety procedures for storing, handling, using an disposing of such materials comply with the standards prescribed by applicable regulations, the risk of accidental contaminations or injury form these materials cannot be completely eliminated. In the event of such an accident, Millennium could be held liable for any damages that result and any such liability could have a material adverse effect. COMPETITION Millennium faces, and will continue to face, intense competition from organizations such as large pharmaceutical, biotechnology, and diagnostic companies, as well as academic and research -43- 44 institutions and government agencies. We are subject to significant competition from organizations that are pursuing the same or similar technologies as those which constitute our technology platform and from organizations that are pursuing pharmaceutical or diagnostic products that are competitive with our potential products. Most of the organizations competing with us have greater capital resources, research and development staffs and facilities, and greater experience in drug discovery and development, obtaining regulatory approval and pharmaceutical product manufacturing and marketing capabilities than Millennium. Research in the field of genomics is highly competitive. Our competitors in the genomics area include, among others, public companies such as Genome Therapeutics Corporation, Human Genome Sciences, Inc., Incyte Pharmaceuticals, Inc., Myriad Genetics, Inc. and Axys Therapeutics, Inc., as well as private companies and major pharmaceutical companies. Universities and other research institutions, including those receiving funding from the federally funded Human Genome Project, also compete with Millennium. A number of entities are attempting to rapidly identify and patent randomly sequenced genes and gene fragments, typically without specific knowledge of the function of such genes or gene fragments. In addition, certain other entities are pursuing a gene identification, characterization and product development strategy based on positional cloning. Millennium's competitors may discover, characterize or develop important genes in advance of Millennium. We also face competition from these and other entities in gaining access to DNA samples used in research and development projects. We expect competition to intensify in genomics research as technical advances in the field are made and become more widely known. In the field of small-molecule drug discovery and development we compete with other companies using using advanced technologies for assay configuration, high-throughput screening and combinatorial chemistry as well as with companies using conventional methods of discovering and developing drugs for the treatment of disease. In the future we may also have to compete with new non-gene therapy treatments which may be developed by our competitors. A number of commercial entities, including major established biotechnology and pharmaceutical companies, as well as development stage entities, currently are involved in the discovery and development of small-molecule drugs. The number and diversity of Millennium's drug discovery programs are comparable to those of major pharmaceutical companies. However, such pharamaceuticals companies have significantly larger organizations and financial resources than Millennium. In most or all of the disease areas for which it is trying to discover drugs, Millennium also faces competition from biotechnology companies focused on particular therapeutic areas or classes of drug targets. Our primary competition in the development of biotherapeutics is from major pharmaceutical and biotechnology companies including Human Genome Science, Lilly, American Home Products, Schering Plough, Novo Nordisk, Amgen, Genentech, Immunes, and Biogen. Several pharmaceutical and biotechnology companies have an established presence in the field of biotherapeutic development and therapeutic protein production. In the diagnostics and pharmacogenomics fields, we compete primarily with other genomic companies such as Genset and Axys Pharmaceuticals as well as certain collaborative ventures -44- 45 involving pharmaceutical and biotechnology companies such as diaDexus (joint venture of Smith Kline Beecham and Incyte Pharmaceuticals). We rely on our strategic partners for support in our disease research programs and we intend to rely on our strategic partners for preclinical evaluation and clinical development of potential products and manufacturing and marketing of products. Each of Millennium's strategic partners is conducting multiple product development efforts within each disease area that is the subject of its strategic alliance with us. Generally, our strategic alliance agreements do not restrict the strategic partner from pursuing competing development efforts. It is therefore possible that any Millennium product candidate could be subject to competition with a potential product under development by a strategic partner. EMPLOYEES As of March 1, 1999, Millennium, including its subsidiaries, had approximately 730 full-time employees, of whom approximately 180 hold Ph.D. or M.D. degrees and approximately 270 hold other advanced degrees, approximately 580 are engaged in research and development activities and approximately 150 are engaged in business development, finance, operations support and administration. Millennium currently has plans to hire up to approximately 200 additional employees by the end of 2000. FACTORS THAT MAY AFFECT RESULTS This Annual Report on Form 10-K contains forward-looking statements. For this purpose, any statements contained in this Annual Report that are not statements of historical fact may be considered to be forward-looking statements. Although this is not a complete list, we use the words "believes," "anticipates," "plans," "expects," "intends," and similar expressions to identify forward-looking statements. There are a number of important factors that could cause our actual results to differ materially from those that are indicated by forward-looking statements. Those factors include, without limitation, those listed below and elsewhere in this Annual Report on Form 10-K. UNCERTAINTIES RELATING TO TECHNOLOGICAL APPROACHES; RISKS RELATED TO PRODUCT DEVELOPMENT. To date, we have not developed or commercialized any products or services based on our genomics and related technologies. Millennium's lead programs and development focus have been primarily directed to disease that may be linked to several or many genes, working in combination. The scientific and medical communities have a limited understanding relating to the role of genes in these diseases. Relatively few products and services based on gene discoveries have been developed and commercialized. Our technological approach to gene identification and target validation may not consistently enable Millennium to successfully identify and characterize genes that predispose individuals to diseases. Any therapeutic, diagnostic or pharmacogenomic products and services based on gene discoveries that Millennium or any of our current and future strategic partners may develop in -45- 46 the future will require significant research, development, testing and regulatory approvals prior to commercialization. Development of these products and services will be subject to the risks of failure that accompany the development of products and services based on new technologies. These risks include the possibilities that any products or services based on these technologies will be found to be ineffective, unreliable or unsafe, or otherwise fail to receive necessary regulatory approvals; that products or services, if safe and effective, will be difficult to manufacture on a large scale or will be uneconomical to market; that proprietary rights of third parties will preclude us or our strategic partners from marketing products or services; and that third parties will market superior or equivalent products or services. Accordingly, even if Millennium is successful in identifying genes associated with specific diseases, there can be no assurance that our gene discoveries will lead to the development of therapeutic and diagnostic products capable of addressing these diseases. The failure to successfully commercialize products based on Millennium-discovered genes would have a material adverse effect on our business, financial condition and operating results. HISTORY OF OPERATING LOSSES; ANTICIPATION OF FUTURE LOSSES; UNCERTAINTY OF ADDITIONAL FUNDING. To date, substantially all of our revenues have resulted from payments from strategic partners. We have not yet generated any therapeutic or diagnostic products or services that have entered preclinical studies. We have not generated any revenue from therapeutic or diagnostic product sales. We anticipate that it will be a number of years, if ever, before we will recognize revenue from therapeutic or diagnostic product sales or royalties. As of December 31, 1998, Millennium had an accumulated deficit of approximately $89 million including a non-recurring charge of $83.8 million in 1997 for acquired in-process research and development related to the acquisition of ChemGenics. We may incur losses for at least the next several years, or may show periods of profitability and periods of losses. Losses may increase as we expand our infrastructure, research and development, and commercialization activities. To achieve sustained profitability, Millennium, alone or with others, must successfully develop therapeutic, diagnostic and pharmacogenomic products or services, conduct clinical trials, obtain required regulatory approvals and successfully manufacture, market and sell such therapeutic or diagnostic products or services. The time required to reach commercial revenue and profitability is highly uncertain. Millennium may not be able to achieve any such revenue and profitability on a sustained basis, if at all. Our approach of applying a comprehensive platform of genomics and related technologies in the discovery of life-science based products and services has required that Millennium establish a substantial scientific infrastructure. Millennium has consumed substantial amounts of cash to date and expects capital and operating expenditures to increase over the next several years as we expand our infrastructure, research and development, and commercialization activities. We believe that existing cash and investment securities and anticipated cash flow from existing strategic alliances will be sufficient to support our operations for the foreseeable future. Our actual future capital requirements, however, will depend on many factors, including progress of our development and discovery programs, the number and breadth of these programs, costs -46- 47 associated with acquisition of products and other opportunities, achievement of milestones under strategic alliance arrangements, our ability to establish and maintain additional strategic alliance and licensing arrangements, and the progress of the development efforts of our strategic partners. Other factors that may affect our future capital requirements include the level of our activities relating to commercialization rights it has retained in its strategic alliance arrangements, competing technological and market developments, costs associated with acquiring rights to technologies developed outside Millennium, costs associated with facility expansion, costs associated with collection of patient information and DNA samples, costs involved in enforcing patent claims and other intellectual property rights and the costs and timing of regulatory approvals. We expect that Millennium will require significant additional financing in the future, which we may seek to raise through public or private equity offerings, debt financings or additional strategic alliance and licensing arrangements. Such additional financing may not be available when needed, or may not be available on terms that are favorable to Millennium or our stockholders. To the extent we raise additional capital by issuing equity securities, ownership dilution to stockholders will result. To the extent that we raise additional funds through strategic alliance and licensing arrangements, we may be required to relinquish rights to certain of our technologies or product candidates, or to grant licenses on terms that are unfavorable, either of which could have a material adverse effect on our business, financial condition and results of operations. In the event that adequate funds are not available, our business would be adversely affected. RELIANCE ON STRATEGIC PARTNERS. Millennium's strategy for development and commercialization of therapeutic, diagnostic and pharmacogenomic products and services based upon our gene discoveries depends upon the formation of various strategic alliances. We may not be able to establish additional strategic alliance or licensing arrangements necessary to develop and commercialize products and services based upon our discovery and development programs. Any such arrangements or licenses may not be on terms favorable to us. Moreover, any current or future strategic alliances or licensing arrangements ultimately may not be successful. In certain of our strategic alliances, we are dependent on our partners for the development, regulatory approval, and commercialization of therapeutic, diagnostic and pharmacogenomic products and services based on the results of these collaborative programs. The agreements with these strategic partners allow them significant discretion in electing whether to pursue any of these activities. We cannot control the amount and timing of resources our strategic partners devote to our discovery and development programs or to the potential products or services which may result from these programs. If any of our strategic partners were to breach or terminate its agreement with us or otherwise fail to conduct its collaborative activities successfully in a timely manner, our discovery and development programs, including the preclinical or clinical development or commercialization of products or services, would be delayed or terminated. Any such delay or termination could have a material adverse effect on our business, financial condition and results of operations. -47- 48 We rely on our strategic partners for strategic alliances in support of our discovery and development programs. We could be required to devote additional internal resources to our product and service development, or scale back or terminate certain development programs or seek alternative collaborative partners, if funding from one or more of our collaborative programs were reduced or terminated. Disputes may arise in the future with respect to the ownership of rights to any technology developed with strategic partners. These and other possible disagreements between strategic partners and Millennium could lead to delays in the collaborative research, development or commercialization of certain products and services, or could require or result in litigation or arbitration, which could be time consuming and expensive. Such disagreements could have a material adverse effect on our business, financial condition and results of operations. Recently there have been a significant number of consolidations among pharmaceutical companies. Any such consolidation involving a company with which Millennium is collaborating could result in the diminution or termination of, or delays in, the development or commercialization of products or research programs under one or more of our strategic alliances. In each of our strategic alliances, we generally agree not to conduct certain research and development, independently or with any commercial third party, that is in the same field as the research and development conducted under the alliance agreement. Consequently, these arrangements may have the effect of limiting the areas of research and development we may pursue, either alone or with others. Our strategic partners, however, may develop, either alone or with others, products and services that are similar to or competitive with the products and services that are the subject of our collaborations with such partners. Competing products and services, either developed by a strategic partner or to which the strategic partner has rights, may result in the partner withdrawing financial and related support for our product and service candidates, which could have a material adverse effect on Millennium's business, financial condition and results of operations. All of our strategic alliance agreements are subject to termination under various circumstances. Each strategic partner has the right to terminate its agreement with Millennium (while maintaining rights and licenses to certain Company discoveries) should we fail to meet certain performance criteria specified in the relevant strategic alliance agreement. Certain of our strategic alliance agreements provide that, upon expiration of a specified period after commencement of the agreement, our strategic partner has the right to terminate the agreement on short notice without cause. We may not be able to successfully negotiate a continuation of such agreements, if we seek to do so. The termination or non-renewal of any strategic alliance could have a material adverse effect on our financial condition and results of operations. RISKS ASSOCIATED WITH ESTABLISHMENT OF SUBSIDIARIES. Millennium has adopted a strategy of establishing business divisions and subsidiaries in order to pursue multiple business opportunities and increase our capabilities and involvement in the later stages of drug discovery and development. In 1997, we organized three subsidiaries, MBio, MPMx and MInfo. During 1998, we combined MPMx and MInfo. We do not hold all of the equity in MBio and, if the -48- 49 alliance between MPMx and Becton Dickinson receives clearance under the Hart-Scott-Rodino Antitrust Improvements Act, we will not hold all of the equity of MPMx. We anticipate that there could be additional minority stockholders in both subsidiaries in the future. Millennium has sought to develop both informal and formal relationships between and among subsidiaries and divisions to provide each unit within the overall group with access to the assets and capabilities of the overall group that are relevant to the business of the particular unit. However, conflicts could arise in the future between or among Millennium and its divisions and subsidiaries with respect to, among other things, future business opportunities and the sharing of rights, technologies, facilities, administrative services or other resources. Certain officers and directors of Millennium, including Mark Levin, Chief Executive Officer and Chairman of the Board of Directors, and Steven Holtzman, Chief Business Officer, currently serve as directors of each of the subsidiaries. Mr. Levin also serves as the President of MBio. Our present executive officers and managers may assume other positions within Millennium's current or future subsidiaries, causing them to be unavailable to serve the parent company or to reduce the amount of time they devote to its affairs. Furthermore, members of the Board of Directors of Millennium and the officers of Millennium who are also affiliated with one or more of the subsidiaries will be required to consider not only the short-term and long-term impact of operating decisions on the parent company, but also the impact of such decisions on the subsidiaries. In some cases, the impact of such decisions could be disadvantageous to Millennium or to any or all of the subsidiaries. Conflicts may arise among the parent company and its subsidiaries and/or the minority stockholders of such subsidiaries, which could have a material adverse effect on our business, financial condition or results of operations. RISKS ASSOCIATED WITH ACQUISITIONS. As part of our business strategy, we may acquire assets and businesses relating or complementary to our operations and business. Such acquisitions could include companies, specific technology, or in-licensed products that are in later stages of development than those in our current programs. Any acquisitions we may make will be accompanied by the risks commonly encountered in acquisitions of companies or products. Such risks include, among other things, potential exposure to unknown liabilities of acquired companies or to acquisition costs and expenses exceeding amounts anticipated for such purposes, the difficulty and expense of assimilating the operations, acquired technology and personnel of the acquired businesses, the potential disruption of our ongoing business, diversion of management time and attention, and the potential failure to achieve anticipated financial, operating and strategic benefits from such acquisitions. In order to finance any such acquisition, it may be necessary for Millennium to raise additional funds through public or private financing. Such financing, if available at all, may be on terms which are not favorable to us, and, in the case of equity financings, may result in dilution to Millennium stockholders. There can be no assurance that we would be successful in overcoming these risks or any other problems encountered in connection with any such acquisitions. If Millennium is unsuccessful -49- 50 in doing so, our business, financial condition and results of operations could be materially and adversely affected. EXPANSION OF OPERATIONS; MANAGEMENT OF GROWTH. We have significantly increased the scale of our operations to support the expansion of our disease research programs and our strategic alliances, including expansion due to the acquisition of ChemGenics in 1997, the organization during 1997 of subsidiaries, the initiation of a major strategic alliance with Monsanto in October 1997 and the initiation of an alliance with Bayer in November 1998. This expansion has included the hiring of a significant number of additional personnel. As of March 1, 1999, Millennium and its subsidiaries had approximately 730 full-time employees, an increase of 210 employees since March 1, 1998. We plan to hire up to approximately 200 new employees by the end of 1999. In addition to hiring new employees, our growth has required and will continue to require the acquisition of significant amounts of additional equipment, including software and informatics resources, and the leasing of additional facilities. Our growth has resulted in an increase in responsibilities placed upon management and has placed added pressures on our operational and financial systems. Our ability to manage such growth effectively will depend upon our ability to broaden our management team and to attract, hire and retain skilled employees. Our success will also depend on the ability of our officers and key employees to continue to implement and improve our operational, management information and financial control systems and to expand, train and manage our employee base. If we are unable to manage growth effectively, such inability could have a material adverse effect on our business, financial condition and operating results. INTENSE SCIENTIFIC AND COMMERCIAL COMPETITION. The fields of genomics and pharmaceuticals are highly competitive. Millennium's competitors in the genomics area include, among others, public companies such as Genome Therapeutics Corporation, Human Genome Sciences, Inc., Incyte Pharmaceuticals, Inc., Myriad Genetics, Inc. and Sequana Therapeutics, Inc., as well as private companies and major pharmaceutical companies. Universities and other research institutions, including those receiving funding from the federally funded Human Genome Project, also compete with Millennium. A number of entities are attempting to rapidly identify and patent randomly sequenced genes and gene fragments, typically without specific knowledge of the function of such genes or gene fragments. In addition, certain other entities are pursing a gene identification, characterization and product development strategy based on positional cloning and other genomics technologies. Many of the organizations competing against Millennium have greater capital resources, research and development staffs and facilities, and greater experience in drug discovery and development, obtaining regulatory approvals and product manufacturing and greater marketing capabilities than us. Our competitors may discover, characterize or develop therapeutic or diagnostic products or services for important genes in advance of Millennium or may make discoveries which render non-competitive or obsolete the products or services that Millennium or our strategic alliance partners may seek to develop, any of which could have a material adverse effect on any related Millennium disease research program. We expect competition to intensify in genomics research as technical advances in the field are made and become more widely known. -50- 51 Generally, our strategic alliance agreements do not restrict the strategic partner from pursuing competing development efforts. Any product candidate of Millennium, therefore, may be subject to competition with a potential product under development by a strategic partner. PATENTS AND PROPRIETARY RIGHTS; THIRD PARTY RIGHTS. Millennium's commercial success will depend in part on obtaining patent protection on gene discoveries and on products, methods and services based on such discoveries. As of March 1, 1999, Millennium and its subsidiaries own, or are the exclusive licensee under, more than 500 pending U.S. and international patent applications and 25 issued U.S. patents. The patent positions of pharmaceutical, biopharmaceutical and biotechnology companies, including Millennium, are generally uncertain and involve complex legal and factual questions. Patent law relating to the scope of claims in the technology fields in which Millennium operates is still evolving, and the extent of protection for our discoveries is therefore uncertain. We may not be issued patents in respect of the patent applications that we file relating to our technology pending patent applications will result in issued patents. Millennium may not develop additional proprietary technologies that are patentable, and any patents issued to either Millennium or our strategic partners may not provide a basis for commercially viable products. Any issued patents may not provide us with any competitive advantages or may not be challenged by third parties. The patents of others may adversely affect our ability to do business. For example, others may independently develop similar or alternative technologies, duplicate any of our technologies, or design around the patented technologies we develop. In addition, others may discover uses for genes, proteins and small molecules other than those uses covered in our patents and patent applications, and these other uses may be separately patentable. It is possible, therefore, that we could be excluded from selling a product for which we have a composition of matter claim if another party were to hold a patent covering the use of a product of that same composition. It is also possible that Millennium could incur substantial costs in litigation if we are required to defend ourselves in patent suits brought by third parties, or if we initiate litigation against others. Millennium has applied for patent protection for novel, full-length genes, partial gene sequences of novel genes and novel uses for known genes identified through its research programs. There has been and continues to be uncertainty regarding the patentability of partial gene sequences and full-length genes absent functional data and the scope of patent protection available for full-length genes and partial gene sequences. Based on recent technological advances in gene sequencing technology, a number of groups other than Millennium are attempting to rapidly identify gene sequences, whose functions have not been characterized. Washington University (in conjunction with Merck & Co., Inc.) and The Institute for Genomic Research (in collaboration with the National Center for Biological Information) have made certain gene sequences available in publicly accessible databases. It is possible that these and other similar disclosures could adversely affect our ability to obtain patent protection for full-length genes claimed in subsequent patent applications. We routinely conducts searches of publicly available databases to determine whether other parties have previously identified gene sequences corresponding to the various partial gene sequences and full-length genes that Millennium has -51- 52 discovered. To the extent any patents issue to other parties on such gene sequences, the risk increases that Millennium's or Millennium's partners' potential products and processes may give rise to claims of patent infringement. Others may have filed and in the future are likely to file patent applications covering inventions that are similar or identical to inventions that we have made. Any such patent applications covered have priority over patent applications filed by Millennium. We believe that certain of our patent applications cover genes that may also be claimed in patent applications filed by other parties. Interference proceedings before the United States Patent and Trademark Office may be necessary to establish which party was the first to discover a particular gene. Our potential products and services may conflict with patents that have been or may be granted to competitors, universities or others. As the biotechnology and biopharmaceutical industries expand and more patents are issued, the risk increases that our potential products and services may give rise to claims that they infringe the patents of others. Other parties could bring legal actions against Millennium or our strategic partner claiming damages and seeking to enjoin clinical testing, manufacturing and marketing of the affected products and services. If any such actions are successful, in addition to any potential liability for damages, We or our strategic partner could be required to obtain a license in order to continue to manufacture or market the affected products and processes. We cannot assure that we or our strategic partners would prevail in any such action or that any license required under any such patent would be made available on commercially acceptable terms, if at all. We believe that there will continue to be significant litigation in the industry regarding patent and other intellectual property rights. If Millennium becomes involved in such litigation, it could consume a substantial portion of the our managerial and financial resources. There is substantial uncertainty concerning whether human clinical data will be required for issuance of patents for human therapeutics. If such data is required, our ability to obtain patent protection could be delayed or otherwise adversely affected. Although the USPTO issued new utility guidelines in July 1995 that address the requirements for demonstrating utility for biotechnology inventions, particularly for inventions relating to human therapeutics, utility will be determined on a case-by-case basis. Moreover, we cannot assure that the USPTO's position will not change with respect to what is required to establish utility for biotechnology inventions. Millennium relies upon trade secret protection for its confidential and proprietary information. We believe that we have developed proprietary technology for use in gene discovery and characterization, including proprietary genetic marker sets, proprietary software (including proprietary software for the capture, storage and analysis of DNA and protein sequence data) and an integrated informatics system. We have not sought patent protection for many of these technologies. In addition, Millennium has developed databases of proprietary gene sequences and biological information, which are updated on an ongoing basis. We have taken security measures to protect our data and we continue to explore ways to further enhance data security. We cannot assure, however, that such measures will provide adequate protection for our trade secrets or other proprietary information. While we require employees, academic collaborators and consultants to enter into confidentiality agreements, we cannot assure that proprietary -52- 53 information will not be disclosed, that others will not independently develop substantially equivalent proprietary information and techniques or otherwise gain access to our trade secrets or disclose such technology, or that we can meaningfully protect our trade secrets. Millennium's academic collaborators have certain rights to publish data and information in which we have rights. While we believe that the limitations on publication of data developed by its collaborators pursuant to its collaboration agreements will be sufficient to permit Millennium to apply for patent protection, there is considerable pressure on academic institutions to publish discoveries. We cannot assure that such publication would not affect our ability to obtain patent protection for some inventions in which we may have an interest. Millennium is a party to various license agreements that give us rights to use certain technologies in our research and development processes. We cannot assure that we will be able to continue to license such technology on commercially reasonable terms, if at all. Our failure to maintain rights to such technology could have a material adverse effect on our business, financial condition and results of operations. IMPACT OF THE YEAR 2000 The Year 2000 issue is the result of computer programs that were written using two digits rather than four to define the applicable year. Any computer program that has date-sensitive software may recognize a date using "00" as the year 1900 rather than the Year 2000. It is possible that this incorrect recognition of dates could cause system failures or miscalculations of data. If these errors were to occur in Millennium systems, they could cause us to be unable to process data and engage in normal business activities. Millennium has determined that we have Year 2000 exposure in the following areas: (i) software and hardware embedded in our laboratory equipment and used in our research and development programs, (ii) computer software and hardware used in our business and facilities operations and (iii) computer systems used by vendors and suppliers with whom we do business. In addition, we have Year 2000 exposure with respect to internally developed informatics application software that is used by Millennium and certain alliance partners who have access to our technology platform. Millennium has a Year 2000 task force that is evaluating our internal computer programs, systems and equipment and overseeing our Year 2000 efforts. We are using both internal and external resources to identify potential issues, costs and solutions to address Year 2000 concerns. For this effort, we are using procedures outlined in the Government Accounting Office's Y2K Guide. We have completed a preliminary inventory of our informatics applications, and we are conducting an in-depth assessment of this inventory. In addition, we have inventoried a substantial amount of software and hardware embedded in our laboratory and facilities equipment as part of our effort to determine Year 2000 compliance. We are also making inquiries of our important suppliers and vendors to assess their Year 2000 readiness. We have inventoried software used in our business operations as well. We intend to identify critical systems and equipment on which to focus our inquiries and testing. -53- 54 To date, we have identified aspects of our computer hardware, network infrastructure and business systems that are not Year 2000 compliant. We have obtained and begun to implement vendor recommendations for correcting these deficiencies. We have also identified aspects of internally developed software applications that are not Year 2000 compliant and have begun testing and corrective programs in this area. In addition, we expect to complete an inventory and assessment of critical laboratory and facilities equipment and systems by the end of the first quarter of 1999. We expect to complete testing and remediation for critical computer hardware, network infrastructure, business systems and internally developed software applications by the end of the third quarter of 1999. We expect to complete testing and any remediation of critical laboratory and facilities equipment by the end of the year. We are not experiencing and do not anticipate any forward-looking problems. At the current time, we expect to be able to correct the problems of which we are aware in a reasonable and timely manner. As we have not completed our evaluation of all of our critical systems, software or equipment, there can be no assurance that we will not find problems that will require us to incur substantial costs to correct or will disrupt our business. Should such problems occur, they could have a material adverse effect on our business, financial position or results of operations. We do not currently have contingency plans for all critical aspects of our systems and operations in the event that we or any of our important suppliers or vendors are not able to become Year 2000 compliant. We expect to develop contingency plans for critical areas if we determine that we or any important vendors or suppliers are not likely to become Year 2000 compliant. We have not incurred material remediation costs to date and we do not currently expect that the aggregate cost of our efforts will be material to our operations or financial position taken as a whole. However, it is possible that remediation costs will be greater than we anticipate and that such costs could have a material adverse effect on our financial position or results of operations. Our alliance partners or collaborators may also experience disruption as a result of the Year 2000 issue. If our alliance partners and collaborators experience disruption, it is possible that our alliances with these partners could be adversely affected, which could have a material adverse effect on our financial position and results of operations. There can be no assurance that we will identify all Year 2000 compliance problems as a result of our efforts or that we will be able to correct compliance problems that are identified in a timely manner. If we are unable, in a timely manner, to identify and correct compliance problems in critical systems and equipment, our business, financial position and results of operations could be adversely affected. UNCERTAINTY OF GOVERNMENT REGULATORY APPROVALS. The FDA, FTC and comparable agencies in foreign countries impose substantial requirements upon the manufacturing and marketing of human therapeutic, diagnostic and vaccine products and services such as those proposed to be developed by Millennium or its strategic alliance partners. Failure to comply with applicable regulations or to obtain the necessary marketing clearances or approvals will significantly impair Millennium's ability to market its products and services. The process of obtaining FDA and -54- 55 other required regulatory approvals is lengthy and expensive. The time required for FDA and other clearances or approvals is uncertain and typically takes a number of years, depending on the complexity and novelty of the product. We and/or our strategic alliance partners may encounter significant delays or excessive costs in our efforts to secure necessary clearances, approvals or licenses. Because certain of the products likely to result from the our research and development programs involve the application of new technologies and may be based on a new therapeutic approach, such products may be subject to substantial additional review by various governmental regulatory authorities. As a result, regulatory approvals may be obtained more slowly than for products using more conventional technologies. For example, proposals to conduct clinical research involving gene therapy at institutions supported by the National Institutes of Health ("NIH") must be approved by the Recombinant DNA Advisory Committee ("RAC") and the NIH. In addition, the U.S. Government has recently established a working group to assess whether additional regulations in the area of genetic testing may be appropriate, which could result in further regulation. There can be no assurance that FDA or other clearances or approvals will be obtained in a timely manner, if at all. Any delay in obtaining, or the failure to obtain, such clearances or approvals could materially adversely affect our ability to generate product or service or royalty revenues. Furthermore, such clearances or approvals may include significant limitations on indications for use for which the product or service may be marketed. Even if FDA or other clearances or approvals are obtained, the marketing and manufacturing of diagnostic and therapeutic products are subject to continuing FDA and other regulatory review. Later discovery of previously unknown problems with a product, manufacturer or facility may result in restrictions on the product or manufacturer, including, suspension, revocation, or withdrawal of product approvals or clearances and/or withdrawal of the product from the market. Violations of the Act or regulatory requirements at any time during the product development process, approval process, or after approval may result agency enforcement actions, including voluntary or mandatory recall, seizure of products, fines, injunctions and/or civil or criminal penalties. Any such agency action could have a material adverse effect on Millennium. Millennium cannot predict the nature of any future laws, regulations, interpretations, or applications, nor can it predict what effect additional governmental regulations or administrative orders, when and if promulgated, would have on its business in the future. Any such requirements could delay or prevent regulatory approval or clearance of products under development. Any such requirements could have a material adverse effect on Millennium's business, financial condition, results of operations, and ability to market its products. Our research and development activities involve the controlled use of hazardous materials, chemicals and various radioactive materials. Millennium is subject to federal, state and local laws and regulations governing the use, storage, handling and disposal of such materials and certain waste products. Although we believe that our safety procedures for handling and disposing of such materials comply with the standards prescribed by federal, state and local laws and regulations, the risk of accidental contamination or injury from these materials cannot be -55- 56 completely eliminated. In the event of such an accident, Millennium could be held liable for any damages that result and any liability could exceed our resources. UNCERTAINTY ASSOCIATED WITH PRECLINICAL AND CLINICAL TESTING. The grant of regulatory approval for the commercial sale of any of our potential products will depend in part on us and/or our strategic alliance partner successfully conducting extensive preclinical and clinical testing to demonstrate the product's safety and efficacy in humans. We have limited experience in conducting preclinical and clinical development activities. Neither Millennium nor any strategic alliance partner has submitted an IND to the FDA for any product candidate based upon our discoveries. The results of preclinical studies by Millennium and/or our strategic alliance partners may be inconclusive and may not be indicative of results that will be obtained in human clinical trials. In addition, results attained in early human clinical trials relating to the products under development may not be indicative of results that will be obtained in later clinical trials. As results of particular preclinical studies and clinical trials are received, we and/or our strategic alliance partners may abandon projects which we might otherwise have believed to be promising. We may not be permitted to undertake and complete human clinical trials of any of our potential products, either in the U.S. or elsewhere. If such trials are permitted. The products under development covered have undesirable side effect or other characteristics that may prevent them from being approved or limit their commercial use if approved. Clinical testing is very expensive, and we and/or our strategic alliance partners will have to devote substantial resources for the payment of clinical trial expenses. In certain circumstances we may rely, in part, on our strategic alliance partners, academic institutions and on clinical research organizations to conduct and monitor certain clinical trials. Such entities may not conduct the clinical trials successfully. Furthermore, we will have less control over such trials than if Millennium were the sole sponsor. As a result, these trials may not begin or be completed as planned. Failure to begin or complete any of our planned clinical trials could have a material adverse effect on our business, financial condition or results of operations. ABSENCE OF SALES AND MARKETING EXPERIENCE; LIMITED MANUFACTURING CAPABILITY. Although Millennium plans to rely significantly on strategic alliance partners for the marketing and distribution of its products and services once developed, we may market and sell certain of our products and services directly and may engage in certain other marketing activities in collaboration with our strategic alliance partners. During 1999, we intend to consider joint development, merger, or acquisition opportunities that could provide Millennium with access to products on the market or in later stages of commercial development than those represented within our current programs. We have no experience in sales, marketing or distribution. We do not expect to establish a direct sales capability until such time as we have one or more products or services in development which are approaching marketing approval. To the extent Millennium enters into marketing or distribution arrangements with strategic alliance partners, any revenues we receive will depend upon the efforts of third parties. Any -56- 57 third party may not market our products and services successfully any third-party collaboration may not be on terms favorable to us. If any marketing partner did not market a product or service successfully, our business and financial results would suffer. If our plan to rely on strategic alliance partners for significant aspects of marketing and selling our products were unsuccessful for any reason, Millennium would need to recruit and train a marketing and sales force which would require us to incur significant additional costs. Millennium may not be able to attract and build a sufficient marketing staff or sales force, the cost of establishing such a marketing staff or sales force may not be justifiable in light of any product or service revenues, and our direct sales and marketing efforts would be successful. In addition, if Millennium succeeds in bringing one or more products or services to market, we may compete with other companies that currently have extensive and well-funded marketing and sales operations. Our marketing and sales efforts may not enable us to compete successfully against such other companies. Millennium does not have commercial-scale facilities to manufacture any products under development in accordance with current Good Manufacturing Practices ("GMP") requirements prescribed by the FDA. We expect to be dependent on third party manufacturers or collaborative partners for our clinical trials and commercial production of products. In the event that we were unable to obtain contract manufacturing, we may not be able to commercialize our products. Where third-party arrangements are established, we expect to depend upon these third parties to manage our clinical trials and meet our production needs in a timely manner. Any such third parties we depend on may not perform. Any failures by third parties could delay clinical trial development or the submission of products for regulatory approval, impair our ability to commercialize products as planned and deliver products on a timely basis, or otherwise harm our competitive position, all of which could have a material adverse effect on our business, financial condition or result or operation. If we determined to develop our own manufacturing capabilities, we would need to recruit qualified personnel and build or lease the requisite facilities and equipment. We do not have any experience in manufacturing on a commercial scale and do not have manufacturing facilities or equipment. We may not be able to successfully develop our own manufacturing capabilities in a cost-effective or timely manner. In addition, the manufacture of any potential Millennium products regulated by the FDA and comparable agencies in foreign countries. Our delay in complying, or our failure to comply with these agencies' manufacturing requirements could materially adversely affect the marketing of our products and our business, financial condition and results of operations. AVAILABILITY OF, AND COMPETITION FOR, FAMILY RESOURCES. Our gene identification strategy includes genetic studies of families and populations prone to particular diseases. These studies are based upon statistical analyses of disease inheritance patterns and require the collection of large numbers of DNA samples from affected individuals, their families and other suitable populations. We are dependent upon collaborations with a number of academic centers for the identification of donor populations and the collection and supply of the DNA samples used in its human disease gene research programs. The availability of DNA samples from large, family- -57- 58 based or other suitable populations is therefore critical to our ability to discover the genes responsible for human diseases through human genetic approaches. The competition for these resources is intense and certain of our competitors have obtained rights to significantly more family resources than we have obtained. We may not be able to obtain access to DNA samples necessary to support our human gene discovery programs and any material lack of availability of such DNA samples would have an adverse effect on our business. ATTRACTION AND RETENTION OF KEY EMPLOYEES AND CONSULTANTS. We are highly dependent on the principal members of our management and scientific staff, none of whom is bound by a long-term employment agreement. The loss of services of any of these personnel could impede significantly the achievement of our development objectives and could have a material adverse effect on our business, financial condition and operating results. Furthermore, recruiting and retaining qualified scientific personnel to perform research and development work in the future will also be critical to our success. There is intense competition among pharmaceutical and health care companies, universities and nonprofit research institutions for experienced scientists, and there can be no assurance that we will be able to attract and retain personnel on acceptable terms. In addition, we rely on our scientific advisors to assist us in formulating our discovery and developing strategy. All of the scientific advisors are employed by employers other than Millennium and have commitments to other entities that may limit their availability to us. Some of our scientific advisors also consult for companies that may be competitors of Millennium. DEPENDENCE ON RESEARCH COLLABORATORS AND SCIENTIFIC ADVISORS. We have relationships with collaborators at academic and other institutions who conduct research at our request. Such collaborators are not Millennium employees. All of Millennium's consultants are employed by employers other than us and may have commitments to, or consulting or advisory contracts with, other entities that may limit their availability to Millennium. As a result, we have limited control over their activities and, except as otherwise required by our collaboration and consulting agreements, can expect only limited amounts of their time to be dedicated to our activities. Our ability to discover genes involved in human disease and commercialize products based on those discoveries may depend in part on continued collaborations with researchers at academic and other institutions. We may not be able to negotiate additional acceptable collaborations with collaborators at academic and other institutions and our existing collaborations may not be successful. Our research collaborators and scientific advisors sign agreements which provide for confidentiality of Millennium's proprietary information and results of studies. There can be no assurance, however, that we will be able to maintain the confidentiality of our technology and other confidential information in connection with every collaboration, and any unauthorized dissemination of our confidential information could have an adverse effect on our business. UNCERTAINTY OF THERAPEUTIC AND DIAGNOSTIC PRICING, REIMBURSEMENT AND RELATED MATTERS. Millennium's business, financial condition and results of operations may be materially adversely affected by the continuing efforts of government and third party payors to contain or reduce the -58- 59 costs of health care through various means. For example, in certain foreign markets pricing and profitability of prescription pharmaceuticals are subject to government control. In the United States, we expect that there will continue to be a number of federal and state proposals to implement similar government control. In addition, increasing emphasis on managed care in the United States will continue to put pressure on the pricing of therapeutic, diagnostic and pharmacogenomic products and services. Cost control initiatives could decrease the price that we or any of our strategic partners receives for any therapeutic, diagnostic and pharmacogenomic products or services in the future and have a material adverse effect on our business, financial condition and results of operations. Further, to the extent that cost control initiatives have a material adverse effect on our strategic partners, Millennium's ability to commercialize our products and to realize royalties may be adversely affected. The ability of Millennium and any strategic partner to commercialize therapeutic, diagnostic and pharmacogenomic products and services may depend in part on the extent to which reimbursement for the products and services will be available from government and health administration authorities, private health insurers and other third party payors. Significant uncertainty exists as to the reimbursement status of newly approved health care products and services. Third party payors, including Medicare, increasingly are challenging the prices charged for medical products and services. Government and other third party payors are increasingly attempting to contain health care costs by limiting both coverage and the level of reimbursement for new therapeutic and diagnostic products and services and by refusing in some cases to provide coverage for uses of approved products for disease indications for which the FDA has not granted labeling approval. Any third party insurance coverage may not be available to patients for any products and services discovered and developed by Millennium or our strategic partners. If adequate coverage and reimbursement levels are not provided by government and other third party payors for our products and services, the market acceptance of these products and services may be reduced, which may have a material adverse effect on our business, financial condition and results of operations. PRODUCT LIABILITY EXPOSURE. Clinical trials, manufacturing, marketing and sale of any of Millennium's or our strategic partners' potential therapeutic products may expose Millennium to liability claims from the use of such therapeutic products. We currently do not carry product liability insurance. There can be no assurance that we or our strategic partners will be able to obtain such insurance or, if obtained, that sufficient coverage can be acquired at a reasonable cost. An inability to obtain sufficient insurance coverage at an acceptable cost or otherwise to protect against potential product liability claims could prevent or inhibit the commercialization of therapeutic products developed by Millennium or our strategic partners. A product liability claim or recall could have a material adverse effect on the business or financial condition of Millennium. While under certain circumstances we are entitled to be indemnified against losses by its strategic partners, there can be no assurance that this indemnification would be available or adequate should any such claim arise. ITEM 2. PROPERTIES -59- 60 The Company's facilities currently consist of an aggregate of approximately 560,000 square feet of office, research and laboratory space in several locations in Cambridge, Massachusetts, pursuant to leases and subleases that expire from 1999 to 2014. ITEM 3. LEGAL PROCEEDINGS The Company is not a party to any material legal proceedings. ITEM 4. SUBMISSION OF MATTERS TO A VOTE OF SECURITY HOLDERS No matters were submitted to a vote of security holders of the Company, through solicitation of proxies or otherwise, during the last quarter of the year ended December 31, 1998. EXECUTIVE OFFICERS OF THE COMPANY The following table sets forth the names, ages and positions of the executive officers of the Company.
Name Age Position ---- --- -------- Mark J. Levin 48 Chairman of the Board, Chief Executive Officer and Director Steven H. Holtzman 45 Chief Business Officer Frank D. Lee, Ph.D. 47 Chief Research Technology Officer Michael Pavia, Ph.D. 43 Chief Technology Development Officer Kevin Starr 36 Chief Financial Officer
Mark J. Levin has served as Chairman of the Board of Directors since March 1996, Chief Executive Officer of the Company since November 1994, and as a director of the Company since inception. From 1987 to 1994, Mr. Levin was a partner at Mayfield Fund ("Mayfield") a venture capital firm, and co-director of its Life Science Group. While employed with Mayfield, Mr. Levin was the founding Chief Executive Officer of several biotechnology and biomedical companies, including Cell Genesys Inc., CytoTherapeutics Inc., Tularik Inc. and Focal, Inc. Mr. Levin holds an M.S. in Chemical and Biomedical Engineering from Washington University. Mr. Levin also serves on the Board of Directors of CytoTherapeutics Inc and Focal, Inc. Steven H. Holtzman has served as Chief Business Officer of the Company since May 1994. From 1986 to 1993, Mr. Holtzman was with DNX Corporation ("DNX"), a biomedical company, and its subsidiaries. He was a founder and the first employee of DNX, served as a member of the Board of Directors, and held several senior management positions including, from 1992 to 1993, President of DNX Biotherapeutics Inc., a subsidiary of DNX, and from 1990 to 1993, Executive Vice President of DNX. Mr. Holtzman received his graduate B.Phil. degree in Philosophy from Oxford University, which he attended as a Rhodes Scholar. Mr. Holtzman currently serves as -60- 61 co-chairperson of the Biotechnology Industry Organization's Bioethics Committee and is a member of the National Bioethics Advisory Commission. Frank D. Lee, Ph.D. joined the Company in July 1994 as Vice President, Research, became Chief Scientific Officer in January 1996 and became Chief Research Technology Officer in November 1997. From 1989 to 1994, Dr. Lee served as Director of Molecular Biology at DNAX Research Institute of Molecular and Cellular Biology, Inc., a subsidiary of Schering-Plough Corporation, a pharmaceutical company ("DNAX"), and from 1981 to 1989 he served as a Senior Staff Scientist at DNAX. Dr. Lee received his Ph.D. from Stanford University and did his postdoctoral research at Stanford University School of Medicine in the Department of Pharmacology and was a Senior Fellow of the American Cancer Society. Dr. Lee also did postdoctoral research at the Massachusetts Institute of Technology's Center for Cancer Research as a fellow of the Helen Hay Whitney Foundation. Michael Pavia, Ph.D. has served as Chief Technology Development Officer of the Company since September 1997. From 1993 to 1997, he was employed by Sphinx Pharmaceuticals, a division of Eli Lilly & Company, where he was most recently Vice President-Cambridge Research. From 1992 to 1993, Dr. Pavia was Vice President of Chemistry at Genesis Pharmaceuticals, Inc., a drug development company. Dr. Pavia also worked in senior scientific positions in the Department of Chemistry at the Parke-Davis Pharmaceutical Research Division of Warner-Lambert Co., a pharmaceutical company. He holds a B.S. in Chemistry from Lehigh University and a Ph.D. in Organic Chemistry from the University of Pennsylvania. Kevin Starr joined Millennium in February 1997 as Vice President of Finance, Millennium BioTherapeutics and became Chief Financial Officer of Millennium Pharmaceuticals in January 1999. Mr. Starr was Corporate Controller of Biogen, Inc. from 1994 to 1997 and Manager of Financial Analysis from 1991 to 1994. Mr. Starr also worked in various financial positions at Digital Equipment Corporation from 1984 to 1991. He earned a Master of Science in Finance from Boston College and a Bachelor of Arts from Colby College. Mr. Starr also serves on the Board of Trustees of Cambridge Savings Bank. PART II ITEM 5. MARKET FOR THE COMPANY'S COMMON EQUITY AND RELATED STOCKHOLDER MATTERS (a) MARKET PRICE OF AND DIVIDENDS ON MILLENNIUM'S COMMON STOCK AND RELATED STOCKHOLDER MATTERS The Common Stock of Millennium has been traded on the NASDAQ National Market under the symbol MLNM since May 6, 1996. Prior to May 6, 1996, Millennium's Common Stock was not publicly traded. On March 15, 1999, the closing price for the sale of a share of Millennium's Common Stock on the NASDAQ Stock Market was $34.375. The following table sets forth for the periods indicated the high and low closing prices per share of our Common Stock as reported by the NASDAQ National Market. -61- 62
1997 ---- High Low ---- --- First Quarter $ 21.50 $13.625 Second Quarter $ 17.50 $ 13.00 Third Quarter $21.125 $ 12.50 Fourth Quarter $ 21.25 $ 16.75 1998 ---- High Low ---- --- First Quarter $22.38 $17.75 Second Quarter $19.00 $14.13 Third Quarter $18.69 $10.57 Fourth Quarter $25.88 $14.75
(b) RECENT SALES OF UNREGISTERED SECURITIES On November 10, 1998, Millennium sold 4,957,660 shares of Common Stock, $.001 par value per share, of Millennium to Bayer AG, a corporation organized and existing under the laws of Germany, in exchange for an aggregate of $96,600,000. No person acted as an underwriter with respect to the above transaction. Millennium relied on Section 4(2) of the Securities Act of 1933, as amended (the "Securities Act"), for the exemption from the registration requirements of the Securities Act, since no public offering was involved. On March 15, 1999, Millennium had approximately 394 stockholders of record. Millennium has never declared or paid any cash dividends on its Common Stock. We currently intend to reinvest earnings, if any, to support the development of our business and do not expect to pay cash dividends for the foreseeable future. ITEM 6. SELECTED FINANCIAL DATA Incorporated by reference from Millennium's 1998 Annual Report to Stockholders under the heading "Selected Financial Data", which appears in Exhibit 13 to this Annual Report on Form 10-K. ITEM 7. MANAGEMENT'S DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION AND RESULTS OF OPERATIONS Incorporated by reference from Millennium's 1998 Annual Report to Stockholders under the heading "Management's Discussions and Analysis of Financial Condition and Results of Operations", which appears in Exhibit 13 to this Annual Report on Form 10-K. -62- 63 ITEM 7A. QUANTITATIVE AND QUALITATIVE DISCLOSURES ABOUT MARKET RISK The Company maintains an investment portfolio in accordance with its Investment Policy. The primary objectives of the Company's Investment Policy are to preserve principal, maintain proper liquidity to meet operating needs and maximize yields. The Company's Investment Policy specifies credit quality standards for the Company's investments and limits the amount of credit exposure to any single issue, issuer or type of investment. The Company does not believe that there is any material market risk exposure with respect to derivative or other financial instruments which would require disclosure under this item. ITEM 8. FINANCIAL STATEMENTS AND SUPPLEMENTARY DATA The financial statements filed as part of this Annual Report on Form 10-K are listed under Item 14 below and are incorporated by reference from the Company's 1998 Annual Report to Stockholders under the heading "Financial Statements and Notes Thereto", which appears in Exhibit 13 to this Annual Report on Form 10-K. ITEM 9. CHANGES IN AND DISAGREEMENTS WITH ACCOUNTANTS ON ACCOUNTING AND FINANCIAL DISCLOSURE During the Company's two most recent fiscal years there have been no disagreements with our independent accountants on accounting and financial disclosure matters. PART III ITEM 10. DIRECTORS AND EXECUTIVE OFFICERS The information required by this item (with respect to Directors) is incorporated by reference from the information under the captions "Election of Directors" and "Section 16(a) Beneficial Ownership Reporting Compliance" contained in our Proxy Statement to be filed with the Securities and Exchange Commission in connection with the solicitation of proxies for the Company's 1999 Annual Meeting of Stockholders to be held on June 2, 1999 (the "Proxy Statement"). The required information about Executive Officers of the Company is contained in Part I of this Annual Report on Form 10-K under the heading "Executive Officers of the Company." ITEM 11. EXECUTIVE COMPENSATION The information required regarding executive compensation is incorporated by reference from the information under the captions "Election of Directors -- Compensation for Directors," "Executive Compensation," "Report of the Compensation Committee" and "Compensation Committee Interlocks and Insider Participation" contained in the Proxy Statement. -63- 64 ITEM 12. STOCK OWNERSHIP OF CERTAIN BENEFICIAL OWNERS AND MANAGEMENT The information required by this item is incorporated by reference from the information under the caption "Stock Ownership of Certain Beneficial Owners and Management" contained in the Proxy Statement. ITEM 13. CERTAIN RELATIONSHIPS AND RELATED TRANSACTIONS The information required by this item is incorporated by reference from the information contained under the caption "Certain Transactions" contained in this Proxy Statement. PART IV ITEM 14. EXHIBITS, FINANCIAL STATEMENT SCHEDULES, AND REPORTS ON FORM 8-K (a) The following documents are included as part of this Annual Report on Form 10-K or are incorporated by reference from the Company's 1998 Annual Report to Stockholders. 1. The following financial statements (and related notes) of Millennium are incorporated by reference from the 1998 Annual Report to Stockholders. Report of Independent Auditors on Financial Statements 20 Consolidated Balance Sheets at December 31, 1998 and 1997 21 Consolidated Statements of Operations for the years ended December 31, 1998, 1997, and 1996 22 Consolidated Statements of Cash Flows for the years ended December 31, 1998, 1997, and 1996 23 Statements of Stockholders' Equity for the years ended December 31, 1998, 1997 and 1996 24 Notes to Financial Statements 26
*Refers to page number of 1998 Annual Report to Stockholders 2. All schedules are omitted as the information required is inapplicable or the information is presented in the consolidated financial statements or the related notes. 3. The Exhibits listed in the Exhibit Index immediately preceding the Exhibits are filed as a part of this Annual Report on Form 10-K. -64- 65 (b) The following Current Reports on Form 8-K were filed by the Company during the last quarter of the period covered by this report: 1. Current Report on Form 8-K filed with the Securities and Exchange Commission on December 1, 1998. The following trademarks of the Company are mentioned in this Annual Report on Form 10-K: Millennium, Millennium Pharmaceuticals, Millennium Predictive Medicine, Millennium Information, Millennium BioTherapeutics, MBio, MPMx, MInfo, Diagnomics(TM), Sequence Explorer, Expression Explorer, and Sample Manager . Other trademarks used in this Annual Report on Form 10-K are the property of their respective owners. -65- 66 SIGNATURES In accordance with the requirements of the Section 13 or 15(d) of the Securities Exchange Act of 1934, the undersigned, duly authorized officers of Millennium have signed this report on Millennium's behalf. MILLENNIUM PHARMACEUTICALS, INC. By: /s/ Mark J. Levin --------------------------- Mark J. Levin Chief Executive Officer In accordance with the requirements of the Securities Exchange Act of 1934, the following persons have signed this report below, on behalf of the Company, in the capacities and on the dates indicated.
Signature Title Date - --------- ----- ---- /s/ Mark J. Levin Chief Executive Officer and Director March 18, 1999 Mark J. Levin (Principal Executive Officer) /s/ Steven H. Holtzman Chief Business Officer March 18, 1999 Steven H. Holtzman /s/ Kevin Starr Chief Financial Officer (Principal March 18, 1999 Kevin Starr Financial and Accounting Officer) /s/ Joshua Boger Director March 18, 1999 Joshua Boger, Ph.D. /s/ Eugene Cordes Director March 18, 1999 Eugene Cordes, Ph.D. /s/ A. Grant Heidrich Director March 18, 1999 A. Grant Heidrich, III /s/ William W. Helman Director March 18, 1999 William W. Helman /s/ Raju Kucherlapati Director March 18, 1999 Raju Kucherlapati /s/ Eric S. Lander Director March 18, 1999 Eric S. Lander, Ph.D.
-66- 67 Exhibit Index The following exhibits are filed as part of this Annual Report on Form 10-K.
Exhibit No. Description - ----------- ----------- (2) 3.1 Amended and Restated Certificate of Incorporation of the Company (2) 3.2 Amended and Restated Bylaws of the Company (1) 4.1 Specimen Certificate for shares of Common Stock, $.001 par value, of the Company (8)(1) 10.1 1996 Director Option Plan (1) 10.2 Third Amended and Restated Investors' Rights Agreement, as amended, dated February 1, 1996 by and among the Company and the persons named on the signature pages thereto. (1) 10.3 Agreement dated as of August 10, 1995 by and between the Company and Joshua Boger. (1) 10.4 Agreement dated as of August 10, 1995 by and between the Company and Eugene Cordes. (1) 10.5 Agreement dated as of April 21, 1993, by and between the Company and Raju Kucherlapati. (1) 10.6 Letter Agreement dated November 30, 1994 by and between the Company and Mark J. Levin. (1) 10.7 Letter Agreement dated April 14, 1994 by and between the Company and Steven H. Holtzman. (1) 10.8 Promissory Note dated March 15, 1996 made in favor of the Company by Steven H. Holtzman. (1) 10.9 Master Lease Agreement dated March 22, 1993 by and between the Company and Comdisco, Inc. (1) 10.10 Loan and Security Agreement dated October 28, 1994 by and between the Company and MMC/GATX Partnership No. 1
-67- 68 (1) 10.11 Master Equipment Lease Agreement dated July 14, 1995 by and between the Company and Lighthouse Capital Partners, L.P. (1) 10.12 Loan Agreement dated February 15, 1996 by and between the Company and Lighthouse Capital Partners, L.P. (4) 10.13 Form of Master Equipment Lease Financing Agreement, as amended, dated September 19, 1996 by and between the Company and GE Capital Corporation. (7) 10.14 Amendment to Master Equipment Lease Agreement dated June 16, 1997 by and between the Company and GE Capital Corporation. (1) 10.15 Lease Agreement dated August 25, 1993, as amended, by and between the Company and the Massachusetts Institute of Technology. (4) 10.16 Lease Agreement dated October 26, 1996 by and between the Company and Fort Washington Limited Partnership (5) 10.17 Lease Agreement between the Company and Old Cambridge Realty Trust, Inc. (5) 10.18 Form of Sub-Lease Agreement, dated June 28, 1996, by and between the Company (as successor to ChemGenics) and PerSeptive Biosystems, Inc. (6) 10.19 Lease dated March 28, 1997 by and between the Company and Old Cambridge Property LLC (6) 10.20 Subordination Non-Disturbance and Attornment Agreement dated March 28, 1997 by and among LaSalle National Bank, as Trustee for Asset Securitization Corporation Commercial Mortgage Pass-Through Certificates, Series D-4, Old Cambridge Property LLC and the Company. (7) 10.21 Lease dated May 15, 1997 by and between the Company and Massachusetts Institute of Technology. (11) 10.22 Lease dated November 17, 1997 by and between the Company and FC 45/75 Sidney, Inc. (12) 10.23 Lease dated June 12, 1998 by and between the Company and 270 Albany Street Realty Trust. (12) 10.24 Lease dated June 17, 1998 by and between the Company and TransAmerica Business Credit Corporation.
-68- 69 +(1) 10.25 Sponsored Research Agreement dated March 25, 1994 by and between the Company and F. Hoffman-La Roche Ltd. +(1) 10.26 Research and License Agreement dated October 3, 1995 by and between the Company and Eli Lilly and Company. +(1) 10.27 Research and License Agreement dated December 9, 1995 by and between the Company and Astra AB. + 10.28 Amended and Restated Research and License Agreement dated December 22, 1998 by and between MPI and Eli Lilly and Company . +(3) 10.29 CNS Research, Collaboration and License Agreement effective as of August 1, 1996 by and between American Home Products Corporation and the Company. +(3) 10.30 Bioinformatics Access and License Agreement effective as of August 1, 1996 by and between American Home Products Corporation and the Company. +(3) 10.31 Transcription Profiling Technology Access and License Agreement effective as of August 1, 1996 by and between American Home Products Corporation and the Company. +(5) 10.32 Collaborative Research Agreement, dated as of January 1, 1995, by and between the Company (as successor to ChemGenics) and Pfizer, Inc. +(5) 10.33 License Option, License and Royalty Agreement, dated as of January 1, 1995, by and between the Company (as successor to ChemGenics) and Pfizer, Inc. +(5) 10.34 Collaborative Research and License Agreement, dated as of November 1, 1996, by and between the Company (as successor to ChemGenics) and American Home Products Corporation, represented by its Wyeth-Ayerst Laboratories division. +(5) 10.35 License Agreement, dated as of June 28, 1996, by and between the Company (as successor to ChemGenics) and PerSeptive Biosystems, Inc. (5) 10.36 Master Agreement, dated as of May 7, 1996, by and between the Company (as successor to ChemGenics) and PerSeptive Biosystems, Inc. (5) 10.37 Amendment, dated November 22, 1996, to the Master Agreement dated May 7, 1996 between the Company (as successor to ChemGenics) and PerSeptive Biosystems, Inc. (5) 10.38 Omnibus Amendment Agreement dated December 18, 1996 between the Company (as successor to ChemGenics) and PerSeptive Biosystems, Inc.
-69- 70 (5) 10.39 Consulting and Interim Services Agreement dated as of June 28, 1996, by and between the Company (as successor to ChemGenics) and PerSeptive Biosystems, Inc. (5) 10.40 Confidentiality and Non-Competition Agreement dated as of June 28, 1996, by and between the Company (as successor to ChemGenics) and PerSeptive Biosystems, Inc. (5) 10.41 Amendment, Consent and Waiver dated January 18, 1997 by and among the Company, ChemGenics and American Home Products Corporation acting through its Wyeth-Ayerst Division ("Wyeth-Ayerst"). (5) 10.42 Letter Agreement dated January 18, 1997 by and among the Company, ChemGenics and Pfizer, Inc. (5) 10.43 Letter Agreement dated January 18, 1997 by and among the Company, ChemGenics and PerSeptive Biosystems, Inc. (5) 10.44 Amendment to Collaborative Research and License Agreement dated March 20, 1997 by and among the Company, ChemGenics and Wyeth-Ayerst. +(7) 10.45 Sponsored Research Agreement by and among Whitehead Institute for Biomedical Research, Affymetrix, Inc., Bristol-Myers Squibb Company and the Company dated April 28, 1997. +(7) 10.46 Consortium Member Agreement by and among Affymetrix, Inc., Bristol-Myers Squibb Company and the Company dated April 28, 1997. +(7) 10.47 Collaboration Agreement by and among the Company, Millennium BioTherapeutics, Inc. ("MBio") and Eli Lilly and Company dated as of May 28, 1997. +(7) 10.48 Technology Transfer and License Agreement by and between the Company and MBio dated as of May 28, 1997. +(7) 10.49 Rights Exchange Agreement by and between the Company and MBio dated as of May 28, 1997. +(9) 10.50 Agreement dated October 27, 1997 by and among the Company, Monsanto Company and Cereon Genomics Inc. (formerly Monsanto Agricultural Genomics II LLC).
-70- 71 (10) 10.51 Agreement and Plan of Merger dated January 20, 1997 by and among the Company, CPI Acquisition Corp. and ChemGenics Pharmaceuticals, Inc. + (13) 10.52 Agreement dated September 22, 1998 by and between the Company and Bayer AG. + (13) 10.53 Investment Agreement dated September 22, 1998 by and between Bayer AG and the Company. + (13) 10.54 Registration Rights Agreement dated November 10, 1998 by and between Bayer AG and the Company. + 10.55 Amendment No. 1 dated December 1998 to Collaborative Research Agreement and License Option, License and Royalty Agreement Each Dated As of January 1, 1995. + 10.56 Amended and Restated Research and License Agreement dated December 1998 by and between Astra AB and Millennium Pharmaceuticals, Inc. 10.57 Sixth Amendment dated January 29, 1999 to Lease Agreement dated August 25, 1993 by and between the Company and Massachusetts Institute of Technology. 13 1998 Annual Report to Stockholders (which shall be deemed filed only with respect to those portions specifically incorporated by reference herein). 21 Subsidiaries of the Company. 23.1 Consent of Ernst & Young LLP, Independent Auditors. 27 Financial Data Schedule.
(1) Incorporated herein by reference to the Company's Registration Statement on Form S-1, as amended (File No. 333-2490). (2) Incorporated herein by reference to the Company's 10-Q for the quarter ending March 31, 1996. (3) Incorporated herein by reference to the Company's 10-Q for the quarter ending June 30, 1996. (4) Incorporated herein by reference to the Company's 10-Q for the quarter ending September 30, 1996. -71- 72 (5) Incorporated herein by reference to the Company's 10-K for the fiscal year ending December 31, 1996. (6) Incorporated herein by reference to the Company's 10-Q for the quarter ending March 31, 1997. (7) Incorporated herein by reference to the Company's 10-Q for the quarter ending June 30, 1997. (8) Management contract or compensatory plan or arrangement filed as an exhibit to this Form pursuant to Items 14(a) and 14(c) of Form 10-K. (9) Incorporated hereby by reference to the Company's Amendment No. 1 to Current Report on Form 8-K, filed with the SEC on January 30, 1998. (10) Incorporated herein by reference to the Company's Current Report on Form 8-K, filed with the SEC on February 20, 1997. (11) Incorporated herein by reference to the Company's 10-K for the fiscal year ending December 31, 1997. (12) Incorporated herein by reference to the Company's 10-Q for the quarter ending June 30, 1998. (13) Incorporated herein by reference to the Company's 10-Q for the quarter ending September 30, 1998. + Confidential treatment requested as to certain portions. -72-
EX-10.28 2 AMENDED & RESTATED RESEARCH AND LICENSE AGREEMENT 1 EXHIBIT 10.28 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. AMENDED AND RESTATED RESEARCH AND LICENSE AGREEMENT (Incorporating amendments to the Research and License Agreement made through December 28, 1998 (the "Restatement Effective Date")) This Amended and Restated Research and License Agreement (the "Agreement") is effective as of March 31, 1996 (the "Effective Date"), by and between Millennium Pharmaceuticals, Inc., a corporation organized and existing under the laws of the State of Delaware and having its principal office at 238 Main Street, Cambridge, Massachusetts 02142 ("Millennium") and Eli Lilly and Company, a corporation organized and existing under the laws of the State of Indiana and having its principal place of business at Lilly Corporate Center, Indianapolis, Indiana 46285 (together with its Affiliates, "Lilly"). WHEREAS, Millennium is in the business of conducting research in the field of human genomics, an objective of which is to discover potential biological targets and assays for use in drug discovery, diagnostics and gene therapy. WHEREAS, Lilly is in the business of discovering, developing and marketing pharmaceuticals, diagnostics and animal health products. WHEREAS, Lilly has substantial experience and expertise in assaying for and developing drugs which are useful in various human disorders, and in developing and commercializing protein therapeutics. WHEREAS, Lilly is interested in funding and collaborating with Millennium in discovering and developing assays to develop therapeutics in the area of Oncology (defined hereinafter), in discovering and developing proteins to use as therapeutics, and in obtaining rights to such technology for diagnostics and gene therapy under specified circumstances. WHEREAS, Lilly and Millennium entered into the Research and License Agreement (the "Original Agreement") effective as of the Effective Date, as amended by a certain Addendum to Research and License Agreement executed in May 1997. WHEREAS, Lilly and Millennium are desirous of amending and restating the terms of the Original Agreement, as amended. NOW, THEREFORE, Millennium and Lilly agree as follows: - 1 - 2 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. Article I --------- Definitions ----------- SECTION 1.1. GENERAL. When used in this Agreement, each of the following terms shall have the meanings set forth in this Article. SECTION 1.2. "Affiliate" means a) any corporation or business entity, of which Lilly or Millennium, at the time in question, directly or indirectly owns or controls fifty percent (50%) or more of the stock having the right to vote for directors thereof or otherwise controls the management of the corporation or business entity, or b) any corporation, individual or business entity which now or hereafter directly or indirectly owns or controls fifty percent (50%) or more of the stock of Lilly or Millennium having the right to vote for directors thereof. SECTION 1.3. "Analog Protein Drug" means a protein or polypeptide which has been modified through a change in its primary structure resulting in a functionally significant change (such as a change in its pharmacokinetic or pharmacodynamic properties) to allow it to become a therapeutic Product demonstrating relevant IN VITRO and IN VIVO activity. For purposes of this definition, a polypeptide constituting the pharmacologically active fragment of a protein, that has not been modified through a change in its primary structure resulting in a functionally significant change, shall not be considered an Analog Protein Drug. SECTION 1.4. "Antisense Drug" means any drug or drug candidate which consists of nucleic acid or a functional analog, derivative or homologue thereof and which is complementary to a segment of DNA of a target gene or such target gene's cognate RNA and which, upon delivery by any means, alters the transcription, processing, elaboration, RNA expression, or protein production of or by such target gene. SECTION 1.5. "Candidate Gene" means (a) [**] which has been implicated in a disease or condition in the Field, or (b) [**] in a disease or condition in the Field. The gene must be implicated in the disease or condition in the Field (i) by Millennium prior to the Effective Date or by Millennium, by Lilly or jointly by the parties in the course of the Program and (ii) [**] the Candidate Gene shall mean [**]; or (C) by any other method, including but not limited to expression profiling or other cDNA technique (in which case it shall be appropriately [**] ; all as determined in good faith by the Joint Management Team. Notwithstanding the foregoing, a gene may be designated a Candidate Gene pursuant to Section 5.6. - 2 - 3 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. SECTION 1.6. "Candidate Protein Drug" means a Protein encoded by a Candidate Gene or other Protein, the identification of which other Protein was based upon the identification of a Candidate Gene, and which, in either case, is potentially suitable for development into a therapeutic product. SECTION 1.7. "Confidential Information" means all materials, Know-How or other information, including, without limitation, proprietary information and materials (whether or not patentable) regarding a party's technology, products, business information or objectives, which is designated as confidential in writing by the disclosing party, whether by letter or by the use of an appropriate stamp or legend, prior to or at the time any such material, trade secret or other information is disclosed by the disclosing party to the other party. Notwithstanding the foregoing to the contrary, materials, Know-How or other information which is orally, electronically or visually disclosed by a party, or is disclosed in writing without an appropriate letter, stamp or legend, shall constitute Confidential Information if the disclosing party, within thirty (30) days after such disclosure, delivers to the other party a written document or documents describing the materials, Know-How or other information and referencing the place and date of such oral, visual, electronic or written disclosure and the names of the persons to whom such disclosure was made, provided, however, that any technical information disclosed at a meeting of the Joint Management Team shall constitute Confidential Information unless otherwise specified. SECTION 1.8. "Contract Year" means the twelve (12) month period beginning on the Effective Date, and each succeeding twelve (12) month period thereafter. SECTION 1.9. "Diagnostic Product" means any diagnostic product in the Field, in the form of a device, compound, kit or service discovered, or the utility of which is discovered, or the development of which is undertaken, in the course of the Program or the Lilly Development Program, using or incorporating Millennium Field Know-How and/or Millennium Field Patent Rights. SECTION 1.10. "Field" means the application in Oncology of: (a) All genes located at chromosome [**] , including but not limited to loss of [**] cancer [**], and [**] cancer [**]; (b) Mechanisms of [**] including but not limited to the association with [**] such as [**] and the mechanism of action of factors that mediate [**], including but not limited to [**]; (c) Mechanisms of [**] proliferative conditions including but not limited to the discovery of novel genes implicated in the susceptibility, progression - 3 - 4 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. and metastasis of [**] cancer, analysis of [**] cells and variants of these cells, and malignant tissues; (d) All [**] mechanisms including but not limited to inhibition of [**] activity; and (e) All [**] mechanisms including but not limited to the inhibition of the [**]. SECTION 1.11. "FTE" means a full time equivalent scientific person year (consisting of a total of forty-seven (47) weeks or one thousand eight hundred eighty (1,880) hours per year of scientific work on or directly related to the Millennium Research Program), carried out by a Millennium employee, having at least a Bachelor Degree in a science. Scientific work on or directly related to the Millennium Research Program to be performed by Millennium employees can include, but is not limited to, experimental laboratory work, recording and writing of results, reviewing literature and references, holding scientific discussions, managing and leading scientific staff, development and application of bioinformatic tools related to the Millennium Research Program, and carrying out project management duties. SECTION 1.12. "Gene Therapy Drug" means any drug or drug candidate, excluding an Antisense Drug, which consists of nucleic acid or a functional analog, derivative or homologue thereof and which, upon delivery by any means, provides a gene product encoded therein which is expressed. SECTION 1.13. "Know-How" means any information, data and materials, including organic compounds and biological materials such as cell lines, RNA, DNA, DNA fragments, organisms, proteins, polypeptides, plasmids and vectors and software, user's manuals and guides. SECTION 1.14. "Lilly Development Program" means the development program to be undertaken by Lilly during the term of the Millennium Research Program and for [**] thereafter to discover and develop Products in the Field based on the results arising from the Millennium Research Program and the Lilly Research Program. SECTION 1.15. "Lilly Field Know-How" means Know-How in the Field which is necessary or useful in order to discover, develop, make, use, sell or seek approval to market Products and, in particular, any such information, data or materials that are necessary or useful to the discovery, development, manufacture or use of and relating to the pharmacological, biological or clinical properties of Products, and which is either (a) in Lilly's possession on the Effective Date and to which Lilly has the right to grant licenses without violating the terms of any agreement with a third - 4 - 5 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. party, or (b) Know-How which Lilly develops or acquires in the course of the Lilly Research Program or the Lilly Development Program. SECTION 1.16. "Lilly Field Patent Right(s)" means a Patent Right within the Field that is owned or controlled by Lilly and a Patent Right within the Field as to which Lilly has the right to grant licenses or sublicenses without violating the terms of any agreement or other arrangement with a third party, at least one claim of which covers the making, using or selling of a Product or any methods and substances that were at any time included in Lilly Field Know-How that are useful in discovering Products, and which is developed or acquired in the course of the Lilly Research Program or the Lilly Development Program. Lilly Field Patent Rights are specifically excluded from the definition of Lilly Field Know-How under this Agreement. SECTION 1.17. "Lilly Research Program" means the research program, the term of which is during the time that research at Millennium is funded by Lilly pursuant to this Agreement, and which is to be undertaken by Lilly to discover Products in the Field based on Millennium Field Know-How and Millennium Field Patent Rights. For any specific compound, the Lilly Research Program shall not extend beyond the time that such compound is [**] . SECTION 1.18. "Major Market Countries" means the United States, Canada, Japan, the United Kingdom, Germany, France, Spain and Italy. SECTION 1.19. "Millennium Field Know-How" means Know-How in the Field which is necessary or useful in order to discover, develop, make, use, sell or seek approval to market Products and, in particular, any such information, data or materials that are necessary or useful to the discovery, development, manufacture or use of and relating to the pharmacological, biological, or clinical properties of Products, other than information and biological samples relating to human materials acquired or otherwise accessed by Millennium and used in genetic analysis in the Program, and which is either (a) in Millennium's possession on the Effective Date and to which Millennium has the right to grant licenses without violating the terms of any agreement with a third party, or (b) Know-How which Millennium develops or acquires in the course of the Millennium Research Program, excluding generalized methods for conducting genomic research and characterizing the function of genes. SECTION 1.20. "Millennium Field Patent Right(s)" means a Patent Right within the Field that is owned or controlled by Millennium and a Patent Right within the Field as to which Millennium has the right to grant licenses without violating the terms of any agreement or other arrangement with a third party, at least one claim of - 5 - 6 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. which covers the making, using or selling of a Product or any methods and substances that were at any time included in Millennium Field Know-How that are useful in discovering Products, and which is either (a) owned or controlled by, or under license to, Millennium on the Effective Date, or (b) developed or acquired in the course of the Millennium Research Program. Millennium Field Patent Rights are specifically excluded from the definition of Millennium Field Know-How under this Agreement. SECTION 1.21. "Millennium Research Program" means the research program, the term of which extends during the time that research is funded by Lilly pursuant to this Agreement, and which is to be undertaken by Millennium using genomic technology to discover and characterize Candidate Genes, Validated Targets and Candidate Protein Drugs with potential utility for the development of Products in the Field, as described in greater detail on APPENDIX A to be attached to this Agreement within ninety (90) days after the Effective Date (which APPENDIX A is subject to review and modification by the Joint Management Team). SECTION 1.22. "Modified Drug" means a compound in the Field which, (a) [**], prior to or outside of the Program, was identified by [**] to its development as a therapeutic product in the Field, and (b) was modified through the use of [**] at any time during the term of the Program or the Lilly Development Program. Modified Drug does not include any Candidate Protein Drug, Peptido Mimetic, Analog Protein Drug, Small Molecule Drug, Gene Therapy Drug or Antisense Drug. SECTION 1.23. "Net Sales" means with respect to the Product, the gross amount invoiced by Lilly, its Affiliates or sublicensees to unrelated third parties for the Product, in the Territory, less: (a) Trade, quantity and cash discounts actually allowed; (b) Discounts, refunds, rebates, chargebacks, retroactive price adjustments, and any other allowances which effectively reduce the net selling price; (c) Actual product returns and allowances; (d) That portion of the net selling price associated with the cost of drug delivery systems; (e) Any tax imposed on the production, sale, delivery or use of the product (excluding federal, state or local taxes based on income); (f) Distribution expenses reasonably documented by Lilly; and (g) Any other similar and customary deductions (as defined and accepted by generally accepted accounting principles ("GAAP")), actually incurred. - 6 - 7 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. Such amounts shall be determined from the books and records of the parties maintained in accordance with GAAP, consistently applied. In the event the Product is sold as part of a Combination Product, the Net Sales from the Combination Product, for the purposes of determining royalty payments, shall be determined by multiplying the Net Sales of the Combination Product (as defined in the standard Net Sales definition) by the fraction, A/A+B where A is the average sale price of the Product when sold separately in finished form and B is the average sale price of the other product(s) sold separately in finished form. In the event that the average sale price of the Product can be determined but the average sale price of the other product(s) cannot be determined, Net Sales for purposes of determining royalty payments shall be calculated by multiplying the Net Sales of the Combination Products by the fraction C/C+D where C is the selling party's average sales price of the Product and D is the difference between the average selling price of the Combination Product and the average selling price of the Product. If the average sale price of the other product(s) can be determined but the average price of the Product cannot be determined, Net Sales for purposes of determining royalty payments shall be calculated by multiplying the Net Sales of the Combination Products by the following formula: one (1) minus C/C+D where C is the average selling price of the other product(s) and D is the difference between the average selling price of the Combination Products and the average selling price of the other product(s). In no event, however, shall the Net Sales of Products be less than fifty percent (50%) of the Net Sales of the Combination Products. In the event that the average sale price of both the Product and the other product(s) in the Combination Product cannot be determined, the Net Sales of the Product shall be deemed to be equal to fifty percent (50%) of the Net Sales of the Combination Product. The Net Sales price for a Combination Product shall be calculated once each calendar year and such price shall be used during all applicable royalty reporting periods for the entire calendar year. When determining the average sale price of a Product or product(s), the average sale price shall be calculated using data arising from the twelve (12) months preceding the calculation of the Net Sales price for the Combination Product. As used above, the term "Combination Product" means any pharmaceutical product which comprises the Product and other active compounds and/or ingredients. - 7 - 8 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. SECTION 1.24. "Oncology" means preventative or therapeutic interventions for malignant processes, including, without limitation, initiation, progression, proliferation and metastasis and the development of benign processes that are known, or become known, to become malignant processes, such as adenomas. Oncology shall not mean the discovery of interventions for benign processes that do not become malignant processes, including without limitation, fibroids. The Joint Management Team shall make a good faith determination based on available scientific data whether a benign process becomes known to become a malignant process. Such determination shall be made by a majority vote of the Joint Management Team. In the event that the Joint Management Team is equally divided on the question of whether a benign process becomes known to become a malignant process, such question shall be decided by a majority vote of a panel of three (3) experts in the field of oncology, one expert selected by Millennium, another expert selected by Lilly and the third expert selected by the two experts selected by the parties. Notwithstanding the foregoing, a benign process that (i) becomes known to become a malignant process after the Effective Date, and (ii) is the subject of an agreement between Millennium and a third party that was entered into prior to the time that such benign process became known to become a malignant process and that precludes a collaboration between Millennium and Lilly with respect to such benign process, shall not be included in Oncology. SECTION 1.25. "Patent Right(s)" means a patent or patent application and all divisions, continuations, continuations-in-part, reissues, reexaminations, extensions, Supplementary Protection Certificates and foreign counterparts thereof that is owned or controlled by Millennium or by Lilly, or a license to the same to which either Millennium or Lilly has the right to grant a sublicense. SECTION 1.26. "Peptido Mimetic Drug" means a synthetic organic molecule which is a mimetic of, or is designed or developed using medicinal, SAR or combinatorial chemistry techniques to incorporate, key structural features of a Candidate Protein Drug and which is a therapeutic product. SECTION 1.27. "Product" means (a) any Candidate Protein Drug, Analog Protein Drug, Small Molecule Drug, or Peptido Mimetic Drug discovered or the development of which is undertaken (i) in the course of the Program, or (ii) using Program Know-How and/or Program Patent Rights at any time during the term of the Lilly Development Program, and which is sold for use as a human pharmaceutical or animal health product, and (b) any Modified Drug, provided that Products shall not include (a) Gene Therapy Drugs, subject to the option set forth in Section 5.3, (b) Antisense Drugs, or (c) Diagnostic Products, subject to the option set forth in Section 5.4. SECTION 1.28. "Program" means, collectively, the Millennium Research Program and the Lilly Research Program. - 8 - 9 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. SECTION 1.29. "Program Know-How" means Millennium Field Know-How and Lilly Field Know-How, collectively, whether or not it was developed or acquired solely or jointly by Millennium and/or Lilly. Program Know-How includes but is not limited to Candidate Genes, Validated Targets and Candidate Protein Drugs. SECTION 1.30. "Program Patent Rights" means Millennium Field Patent Rights and Lilly Field Patent Rights, collectively, whether or not it was developed or acquired solely or jointly by Millennium and/or Lilly. SECTION 1.31. "Project Team Status" means the point in the Lilly Development Program when a potential Product has been [**]. SECTION 1.32. "Protein" means any of a class of high molecular weight (i.e., weighing greater than [**]) polymer compounds composed of a variety of amino acids joined by peptide linkages, including aggregates, hybrids and fragments thereof, as well as naturally post-translationally modified variants thereof (i.e., glycosylated proteins) and chemically modified versions thereof (e.g., pegylated or liposomally encapsulated proteins). SECTION 1.33. "Small Molecule Drug" means a small molecule therapeutic product within the Field originating from a screen using a Validated Target, other than a Candidate Protein Drug, an Analog Protein Drug, a Peptido Mimetic Drug, a Modified Drug, a Gene Therapy Drug or an Antisense Drug. SECTION 1.34. "Territory" means all countries of the world. SECTION 1.35. "Validated Target" means a biological target which, based on demonstrating relevant IN VITRO and IN VIVO activity, is appropriate for [**] , and which has been [**]. A Validated Target may be a Candidate Gene, a Protein encoded by a Candidate Gene or other qualifying biological molecule in a relevant biochemical pathway, the identification of which or the linkage with a disease is based upon the identification of a Candidate Gene. SECTION 1.36. "Valid Claims" means any claim(s) pending in a patent application or in an unexpired patent which has not been held unenforceable, unpatentable or invalid by a decision of a court or other governmental agency of competent jurisdiction, unappealable or unappealed within the time allowed for appeal, and which has not been admitted to be invalid or unenforceable through reissue or disclaimer. If in any country there should be two or more such decisions - 9 - 10 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. conflicting with respect to the validity of the same claim, the decision of the higher or highest tribunal shall thereafter control; however, should the tribunals be of equal rank, then the decision or decisions upholding the claim shall prevail when the decisions are equal in number, and the majority of decisions shall prevail when the conflicting decisions are unequal in number. SECTION 1.37. "Program Gene" means an isolated gene that (a) was identified or discovered in the course of the Program, (b) is not designated as a Candidate Gene, and (c) is permanently dropped from investigation for use in the Field as part of the Program or the Lilly Development Program. Without limiting the generality of the foregoing, a Program Gene does not include any gene that is temporarily dropped from investigation for use in the Field as part of the Program or the Lilly Development Program. SECTION 1.38. "Outside of the Field" means (a) all human medical indications other than those in the Field and (b) all animal medical indications. Article II ---------- Research and Collaboration Program ---------------------------------- SECTION 2.1. EXCLUSIVE ARRANGEMENT. During the term of the Millennium Research Program, Millennium agrees that it shall not participate, either directly or in collaboration with others in any genomics research relating to the Field except pursuant to the terms of this Agreement, including the provisions of Section 5.2 hereof, provided that the foregoing shall not apply to activities in the Field by Millennium relating to the research, development and commercialization of Diagnostic Products (subject to the provisions of Section 5.4), Gene Therapy Drugs (subject to the provisions of Section 5.3) and Antisense Drugs. Wherever used in the immediately preceding sentence, the term "Field" shall be limited in its scope to the areas set forth in subsections (a), (b) and (c) of Section 1.10. Millennium acknowledges that Lilly has independent research efforts directed to the Field but not relating to the Millennium Research Program. To the extent that such activities do not fall within the scope of the Lilly Research Program, Millennium acknowledges that it is not granted any right to such research. SECTION 2.2. JOINT MANAGEMENT TEAM. As soon as practicable after execution of the Original Agreement, the parties shall establish a Joint Management Team, consisting of four (4) representatives designated by Lilly and four (4) representatives designated by Millennium. Each party shall make its initial designation of its representation not later than thirty (30) days after execution of the Original Agreement. Each party shall cause its representatives to attend the meetings of the Joint Management Team. If a representative of a party is unable to attend a meeting, such party may designate an alternate to attend such meeting in place of the missing representative. In addition, each party may at its discretion invite non-voting - 10 - 11 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. employees, consultants or scientific advisors to attend the meetings of the Joint Management Team. The Joint Management Team shall meet no less frequently than once each calendar quarter, and shall meet at such other times as deemed appropriate by the Joint Management Team. Each party may change any one or more of its representatives to the Joint Management Team at any time upon notice to the other party. The location of the Joint Management Team meetings shall alternate between Massachusetts and Indiana, or as otherwise mutually agreed. SECTION 2.3. JOINT MANAGEMENT TEAM RESPONSIBILITIES. The Joint Management Team shall be responsible for coordinating and reviewing the activities of the parties under this Agreement, including without limitation the Program. Without intending to limit the generality of the foregoing, the Joint Management Team shall oversee the disclosure and transfer of relevant Know-How to facilitate the research and development of Candidate Genes, Validated Targets, Candidate Protein Drugs and Products pursuant to Article III. Subject to the minimum funding levels established in Section 8.1, the Joint Management Team shall determine the level and extent of research work to be conducted by Millennium and funded by Lilly under this Agreement. The Joint Management Team shall be informed of the specific individuals who will work on the Millennium Research Program. The Joint Management Team shall also attempt to settle any disputes that may arise between the parties. SECTION 2.4. GOALS AND OBJECTIVES. As soon as practical after the execution of the Original Agreement, the Joint Management Team shall agree on the initial goals and objectives and research and development activities of the Program, including the specific targets to be initially pursued under the Program. At each meeting of the Joint Management Team, the progress of the Program will be reviewed and if necessary the goals and/or resource allocation for the Millennium Research Program will be modified. No later than October 1 of each year during the Millennium Research Program, the Joint Management Team shall meet to discuss in detail the progress of the Program and agree upon the short- and long-term goals and prospective budget for the Millennium Research Program. In the event a significant development occurs which may affect the short- or long-term goals or resource allocations of the Program or methods of achieving said goals, the Joint Management Team shall reconvene, reassess and change such methods, resource allocations and/or goals of the Millennium Research Program. - 11 - 12 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. SECTION 2.5. JOINT MANAGEMENT TEAM DECISIONS. The affirmative vote of [**] of the members of the Joint Management Team shall be required to take any action. Any member of the Joint Management Team who is not present at any meeting either in person or by a designated alternate may appoint another representative or alternate as his proxy to act on his behalf on all matters coming to a vote. The Joint Management Team may conduct meetings by telephone or videoconference. Except as otherwise provided in this Agreement, if the Joint Management Team is unable to reach a [**] or greater vote on any issue, it shall refer that issue to the President of Lilly Research Laboratories (a division of Lilly) and the Chief Executive Officer of Millennium for resolution. If the President of Lilly Research Laboratories and the Chief Executive Officer of Millennium are unable to reach agreement on any issues relating to the Program, [**]; provided, however, that in the event of a disagreement pertaining to [**] comprising the Millennium Research Program (or any current or future collaborative programs) with regards to any current or future Programs agreed upon between the parties, then [**]. For purposes of this Section 2.5,[**] shall be deemed to be significant if more than [**]. SECTION 2.6. PROGRAM PLAN. The parties shall engage in the Program to expedite the discovery and development of Candidate Genes, Validated Targets, Candidate Protein Drugs and Products in substantial accordance with the research schedule and goals set forth in APPENDIX A. SECTION 2.7. MILLENNIUM'S COMMITMENT TO MILLENNIUM RESEARCH PROGRAM. Millennium shall conduct the Millennium Research Program for the first five (5) Contract Years. Prior to the close of the fifth Contract Year, Lilly shall have the option to extend the Millennium Research Program at Millennium for three (3) consecutive one Contract Year periods provided that Lilly gives notice to Millennium at least six (6) months prior to the expiration of the fifth Contract Year and any succeeding Contract Year. However, Lilly and Millennium shall begin discussions concerning the expiration or extension of the Millennium Research Program at least twelve (12) months prior to the end of the fifth Contract Year and each Contract Year thereafter. If Lilly so exercises such option, Millennium and Lilly will diligently attempt to mutually agree on the level and extent of research to be conducted at Millennium during such additional period. If the parties are unable to agree on the level of research for such additional period, then at Lilly's request Millennium shall conduct, and Lilly shall fund, research at a level that is the lesser of (i) the level that was funded during the immediately preceding Contract Year, or (ii) the number of FTEs agreed upon in Section 8.1 for the fifth Contract Year. In the absence of such agreement or request, the Millennium Research Program shall not be extended. Nothing herein shall be interpreted to eliminate any required adjustments to the FTE - 12 - 13 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. rate pursuant to Section 8.1(a). During the term of the Millennium Research Program, Millennium shall submit to Lilly a quarterly report stating the name of each Millennium employee working on the Millennium Research Program and the number of hours that employee spent on the Millennium Research Program. SECTION 2.8. DILIGENCE. Millennium shall use reasonable efforts in pursuing and conducting research and development of all Candidate Genes, Validated Targets, Candidate Protein Drugs and related assays developed under the Millennium Research Program. Millennium shall use reasonable efforts to carry out all work done in connection with the Millennium Research Program in compliance with any federal, state or local laws, regulations and guidelines governing the conduct of such work. In addition, all animals involved in the Millennium Research Program shall be provided humane care and treatment in accordance with generally acceptable current veterinary practices. Article III ----------- Disclosure of Know-how ---------------------- SECTION 3.1. MILLENNIUM KNOW-HOW. Commencing with the execution of the Original Agreement, Millennium shall disclose to Lilly all existing Millennium Field Know-How which Millennium reasonably believes to be pertinent to the Program. Millennium shall disclose to Lilly on an ongoing basis all additional Millennium Field Know-How which Millennium reasonably believes to be pertinent to the successful execution of the Program for the duration of the Program. Notwithstanding the foregoing, Millennium need not disclose to Lilly any Know-How which Millennium is precluded from disclosing under any agreement binding upon it. SECTION 3.2. BIOLOGICAL MATERIALS. Millennium shall also provide Lilly with genes, gene fragments, vectors, cell lines, strains, transgenic organisms, model organisms, DNA and DNA fragments and other biological materials, as well as information relating to such materials, which Millennium reasonably believes to be pertinent to Lilly's activities in the Program. Notwithstanding the foregoing, Millennium need not provide Lilly with any such biological materials or related information which Millennium is precluded from providing under any agreement binding upon it. SECTION 3.3. LILLY KNOW-HOW. Lilly shall disclose to Millennium such Lilly Field Know-How which Lilly reasonably believes is needed by Millennium to carry out its obligations within the Millennium Research Program hereunder; provided, however, that Lilly need not disclose to Millennium any Know-How which Lilly is precluded from disclosing under any agreement binding upon it or which Lilly deems to be inappropriate for disclosure. - 13 - 14 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. Article IV ---------- Confidentiality --------------- SECTION 4.1. CONFIDENTIAL INFORMATION AND KNOW-HOW. All Know-How or other Confidential Information disclosed by one party to the other during the term of this Agreement shall not be used by the receiving party except in connection with the Program or the identification, selection, preparation, development, manufacture or sale of Products, shall be maintained in confidence by the receiving party, and shall not be disclosed by the receiving party to any other person, firm, or agency, governmental or private, without the prior written consent of the disclosing party, except to the extent that the Know-How or other Confidential Information: (a) is known by or in possession of the receiving party at the time of its receipt as documented in contemporaneous written records; or (b) is properly in the public domain; or (c) is subsequently disclosed to the receiving party without obligation of confidentiality by a third party who may lawfully do so; or (d) is required to be disclosed to governmental agencies in order to gain approval to sell Products; or (e) is necessary to be disclosed to agents, consultants, Affiliates and/or other third parties for the research and development and/or marketing of Products, under this Agreement, which entities first agree to be bound by the confidentiality obligations contained in this Agreement. SECTION 4.2. EMPLOYEE OBLIGATIONS. Millennium and Lilly each agree that it shall provide Know-How and other Confidential Information received from the other party only to its employees, consultants and advisors who have a need to know and have an obligation to treat such information and materials as confidential. On a regular basis, Millennium agrees to explicitly counsel its consultants and advisors of the implications arising from such obligations. SECTION 4.3. TERM. All obligations of confidentiality and non-use imposed under this Article IV shall expire ten (10) years following termination of the Millennium Research Program. Notwithstanding the foregoing, with respect to Know-How necessary to manufacture Products, such obligations shall not expire until the first to occur of an event specified in clause (a), (b) or (c) of Section 4.1. - 14 - 15 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. Article V --------- Grant of Rights --------------- SECTION 5.1. LICENSE TO LILLY. Subject to the terms and conditions of this Agreement, Millennium hereby grants to Lilly: (a) an exclusive, worldwide, non-royalty bearing license (subject to Millennium's retained rights), under Millennium Field Patent Rights and Millennium Field Know-How, to make, have made, use, and have used Candidate Genes and Validated Targets within Oncology; such license [**] on prior notice to Millennium, provided however, that Lilly [**]; (b) an exclusive, worldwide, royalty bearing license, under Millennium Field Patent Rights and Millennium Field Know-How to make, have made, import, use, have used, offer to sell and sell Products; such license [**] on prior notice to Millennium, provided however, that [**]; (c) an option to obtain exclusive licenses to [**] (as defined in Section 5.2), pursuant to the provisions of Section 5.2; (d) a right to either i) negotiate for rights to collaborate on Gene Therapy Drugs, which embody or are discovered or developed using Millennium Field Patent Rights or Millennium Field Know-How, or ii) a co-exclusive right to make, have made, import, use, have used, offer to sell and sell Gene Therapy Drugs, which embody or are discovered or developed using Millennium Field Patent Rights or Millennium Field Know-How, pursuant to the provisions of Section 5.3; (e) an option to co-develop and/or co-promote certain Diagnostic Products, for use in the Field and the area of Oncology, which embody or are discovered or developed using Millennium Field Patent Rights or Millennium Field Know-How, pursuant to the provisions of Section 5.4; and (f) a co-exclusive (with Millennium), worldwide, non-royalty bearing license, under Millennium Field Patent Rights and Millennium Field Know-How, to make, have made, use, and have used Program Genes [**] and to make, have made, use, and have used Candidate Genes and Validated Targets [**]; such license shall include the right to grant sublicenses on prior written notice to Millennium, provided however, [**]. - 15 - 16 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. SECTION 5.2. [**]. (a) The parties understand and agree that during the term, [**], Millennium may undertake genomics research activities designed primarily to yield biological molecules likely to be useful as targets or as pharmaceutical products in the Field (such as the use of [**] . For the purposes of the foregoing definition of [**], which definition shall apply wherever such term is used in this Agreement, the term "Field" shall be limited in its scope to the areas set forth in subsections (a), (b) and (c) of Section 1.10, PROVIDED THAT the limitation set forth in this sentence shall only apply prospectively from the Restatement Effective Date and PROVIDED FURTHER THAT [**] by Millennium to Lilly pursuant to the provisions of this Section 5.2(a) set forth below shall not be affected by such limitation. The parties agree that [**] shall have the [**]. In order to achieve this goal, for the term of the Millennium Research Program, [**] at its regularly scheduled quarterly meetings of any [**] it intends to commence in the upcoming quarter as well as a progress report on any ongoing Non-Program Field Project (the first such notice of a Non-Program Field Project hereinafter referred to as the "Notice Date"). If the Joint Management Team reasonably determines that such [**] shall either [**] or shall [**], provided however, that [**] shall not be required to [**] on a process that, at the time of such initiation, was not known to be a [**] and was only subsequently included in [**] by the Joint Management Team pursuant to Section [**]. If a [**] is approved by the Joint Management Team,[**] during the term of the Millennium Research Program [**] and, in so doing, obtain all rights and incur all obligations associated therewith as if such [**] , except as otherwise provided in this Section 5.2 and Section 8.3. [**] . If such [**] is used in a [**], then the parties shall [**] to the terms by which such [**] shall be used in said [**] before the [**] is used in said [**]. In the event that [**] with respect to a [**], all prior Patent Rights and prior Know-How developed or acquired in the course of such [**] under this Section 5.2) shall be deemed to be [**], respectively. [**] at any time during the term of the Millennium Research Programs as follows: (i) during the first year after a Notice Date,[**] (as determined by Millennium's certified public accountants) to the relevant [**] that Millennium has incurred from the Notice Date to the date [**], including but not limited to [**] which are directly attributable to such [**] (the "External Reimbursement Cost"),[**] (a "Milestone Payment"); (ii) during the second year after a Notice Date, [**] External Reimbursement Cost [**] of any Milestone Payment; (iii) during the third year after a Notice Date,[**] of the Internal Reimbursement Cost [**] of the External Reimbursement Cost [**] of any Milestone Payment; or (iv) anytime during or after the fourth year after a Notice Date until the end of the term of the Millennium Research Program,[**] of the Internal Reimbursement Cost [**] of the External Reimbursement Cost [**] of any Milestone Payment. In the event that [**] - 16 - 17 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. with respect to a [**] in order to recompense Millennium for relevant pre-Notice Date expenditures, Lilly shall pay to Millennium, in addition to the other relevant payments set forth above in this Section 5.2(a),[**], reasonably allocable (as determined by Millennium's certified public accountants) to all prior research included in the [**] that Millennium has incurred in the conduct of such research from the date of its inception (as shown by documentation reasonably acceptable to Lilly) to the Notice Date. (b) The parties further understand and agree that during the term [**], Millennium, alone or in collaboration with a third party, may undertake (i) genomic research activities primarily designed to identify genetic and other biological markers of disease initiation and progression as well as drug and treatment responsiveness useful for diagnostic, prognostic and pharmacogenetic purposes but which may also yield biological molecules of possible utility as targets or as pharmaceutical products in the Field (a "Millennium Diagnostic Project"), and/or (ii) genomic research activities not designed primarily to yield biological molecules likely to be useful as targets or as pharmaceutical products in the Field but which may yield such biological molecules (the [**]). In the event that (x) a biological molecule with utility as a target or a pharmaceutical product in the Field is identified in the course of a Millennium Diagnostic Project or a [**] during the term of the Millennium Research Program; (y) Millennium elects to exploit the potential of such biological molecule for therapeutic use in the Field on its own or in collaboration with a third party and (z) Millennium has no prior commitment to a third party concerning the research, development and/or commercialization of such biological molecule, then Millennium shall (1) [**] in the Field of such [**] and (2)[**] regarding the possibility of a [**] concerning the research, development and/or commercialization of such [**] for therapeutic purposes within the Field. Wherever used in this Section 5.2(b), the term "Field" shall be limited in its scope to the areas set forth in subsections (a), (b) and (c) of Section 1.10. SECTION 5.3. GENE THERAPY. During the term of the Program, Millennium and Lilly agree to discuss collaborations within the Field and the area of Oncology concerning candidates for gene therapy arising from the Program. The initial opportunity to begin such discussions concerning gene therapy shall arise when a gene that is appropriate for use in gene therapy is discovered in the course of the Millennium Research Program or a [**] and is brought to the attention of the Joint Management Team. When this occurs, the parties shall have a period of [**] in which to decide whether to begin good faith negotiations with each other concerning a potential gene therapy collaboration on such a gene. If the parties decide to - 17 - 18 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. collaborate on a gene therapy project, the terms of such collaboration shall be governed by the terms and conditions of a separate agreement. If, either (a) a gene described in the preceding paragraph has a potential application only outside of Oncology, (b) the parties choose not to negotiate with each other concerning a collaboration within Oncology, or (c) the parties cannot agree to the terms of a collaboration within Oncology, then each party shall have a co-exclusive right to make, use and sell a Gene Therapy Drug embodying such a gene for all gene therapy applications, both within the Field and outside the Field, within the Territory. Each party shall be entitled to sublicense the co-exclusive rights to make, use and sell each Gene Therapy Drug embodying such gene to one (1) sublicensee per country. Any further licensing of the Gene Therapy Drug embodying such gene shall require the [**]. Each party shall pay the other party a [**] on its Net Sales of the Gene Therapy Product within the Territory. All royalty payments shall be made subject to the provisions of Article VIII of this Agreement. In the event that the total royalty burden of any Gene Therapy Product sold by a party is greater than [**] of the Net Sales of the Gene Therapy Product in the Territory (inclusive of the [**] paid under the terms of this Section 5.3), then that party's royalty payable to the other party shall [**] of the excess over [**] paid by that party; provided, however, the royalty payment to the other party shall not fall below [**] of Net Sales of the Gene Therapy Product in the Territory. Nothing within this Section 5.3 grants Millennium any rights to Candidate Genes, Candidate Protein Drugs or Validated Targets within the Field, except as necessary for Millennium fully to exercise its rights to Gene Therapy Products as granted herein. SECTION 5.4. [**]. During the term of the Program and the Lilly Development Program,[**] Products arising from the Millennium Research Program and related to the Field and the area of Oncology under the following circumstances: (a) [**] or its development partner [**] (provided that Millennium is made aware of the Lilly [**] product at least three (3) years in advance of the date on which this [**] as specified in this paragraph) which are not being developed by Millennium, a Millennium Affiliate or a commercial partner of Millennium. With respect to each [**] shall become [**] in a Major Market Country for a [**] in the event that Millennium, a Millennium Affiliate or its commercial partner has not earlier submitted the pertinent regulatory approval package for said [**] to the FDA (or its equivalent in any Major Market Country) for marketing approval or, if relevant, is not capable of providing, or is unwilling to provide, [**] of its interest, and the parties shall negotiate the specific terms of such an - 18 - 19 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. agreement in good faith. [**] set forth in this Section 5.4(a), [**] Millennium's Net Sales of the [**] in the Territory. (b) The parties acknowledge and agree that promotion by [**] of a [**] associated with a product marketed by [**] or a [**] in development by [**] may advantageously affect the sales of [**] and the associated product or Product. Therefore,[**] related to the Field and the area of [**] on the market related to such [**] or a product or Product in development which is also related to such [**]. The [**] shall not be [**] but shall be [**]. Millennium shall review the position of Lilly and the parties shall negotiate in good faith a [**] with respect to such [**] . Millennium shall [**] on the Net Sales of the [**] in those countries where Lilly co-promotes the [**] , whichever is lower; provided, however, that [**] if Lilly is receiving royalty payments pursuant to Section 5.4(a). Millennium shall also [**] , at Millennium's, its Affiliate's or its partner's [**]. SECTION 5.5. USE OF PROGRAM GENES, CANDIDATE GENES, AND VALIDATED TARGETS. Pursuant to the grant set forth in Section 5.1(f), Lilly shall have a co- exclusive right (with Millennium) to use Program Genes [**]. In the event that any such use results in the identification of a compound (i) derived from the use of a [**] or (ii) derived from the use of a [**] the clinical development and commercialization of such [**] (where such compound was derived from the use of a Program Gene) or [**] (where such compound was derived from the use of a Candidate Gene or a Validated Target), [**] (Net Sales as redefined for purposes of this Section 5.5 to include amounts invoiced by Lilly [**]); provided however, that (i) in the case of a [**] that is identified through the use of a Program Gene, [**] pursuant to Section 8.3, as if such [**], and (ii) in the case of a [**] that is identified through the use of a Candidate Gene or Validated Target,[**] pursuant to Section 8.3, as if such [**]. Millennium shall retain a co-exclusive right to use Program Genes [**] and to use Candidate Genes and Validated Targets [**] (including but not limited to any [**]) any work in the Field arising from any resulting compound discovered using a Program Gene or any work [**] arising from any resulting compound discovered using a Candidate Gene or Validated Target. SECTION 5.6. THIRD PARTY GENE. The parties agree that during the term of the Program, an isolated gene that has been implicated in a disease or condition in the Field by a third party before or during the term of the Program (a "Third Party Gene") may be designated a Candidate Gene if it is determined by the Joint - 19 - 20 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. Management Team that the study of such Third Party Gene may lead to further development of such Third Party Gene as a Candidate Gene and Validated Target. Article VI ---------- Patent Ownership, Protection, Validity and Related Matters ---------------------------- SECTION 6.1. PATENTABLE INVENTIONS. If a patentable invention related to the Field is conceived in the course of and within the scope of the Program and is reduced to practice within the course of the Program or within twelve (12) months after its expiration or termination, Lilly and Millennium shall discuss that invention and the desirability of filing a United States patent application covering the invention, as well as any foreign counterparts. The party owning the invention shall make the final decision with respect to any such filings. If an invention is made jointly pursuant to 35 U.S.C. ss.116, the Joint Management Team shall determine which party shall file and prosecute the application. If no decision is made regarding which party shall file and prosecute the application covering such jointly owned invention, Lilly shall make the decision. SECTION 6.2. OWNERSHIP. Lilly shall own all inventions within the scope of the Program made solely by its employees, and Millennium shall own all inventions within the scope of the Program made solely by its employees. All inventions made jointly by employees of Lilly and employees of Millennium shall be owned jointly by Millennium and Lilly. All patent applications and patents covering any invention made within the scope of the Program shall be owned by the parties or party, as the case may be, that own(s) said invention. SECTION 6.3. REVIEW AND COMMENT. Each party shall provide the Joint Management Team with a copy of any patent application which first discloses any specific Program Know-How, including without limitation any DNA fragment, gene, Candidate Gene, Candidate Protein Drug, Validated Target or assay within the Field and/or any IN VITRO or IN VIVO data from such Candidate Genes, Candidate Protein Drug, Validated Targets or assays within the Field prior to filing the first of such applications in any jurisdiction, if possible, for review and comment by the Joint Management Team or its designees. The Joint Management Team and/or its designees shall maintain any such patent application in confidence, pursuant to Article IV. SECTION 6.4. NOTICE OF DECISION. If a party decides not to file or maintain an application or patent on its invention, or on a joint invention, in any country, it shall give the other party reasonable notice to this effect. After such notice, the other party may file or maintain the application or patent. - 20 - 21 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. SECTION 6.5. RETENTION OF RIGHTS. Each party shall continue to own and retain proprietary rights to its Know-How and Patent Rights which are licensed or disclosed under this Agreement except as specifically provided herein. SECTION 6.6. PROSECTION AND MAINTENANCE. Each party agrees to prosecute and maintain the Patent Rights owned by it, and to prosecute any interference proceedings with respect to such Patent Rights. Patent Rights jointly owned by the parties shall be prosecuted and maintained, including the prosecution of any interference proceedings with respect thereto, by the party who has decision-making authority with respect thereto under Section 6.1. The party initially responsible for such prosecution and maintenance (the "Initial Responsible Party") shall give notice to the other party of any decision to cease such prosecution and maintenance and, in such case, shall permit the other party at its sole discretion to continue prosecution or maintenance. If the other party elects to continue prosecution or maintenance, the Initial Responsible Party shall execute such documents and perform such acts as may be reasonably necessary for the other party to continue prosecution or maintenance. SECTION 6.7. THIRD PARTY INFRINGEMENT. Millennium and Lilly each agrees to take reasonable actions to protect the Program Patent Rights from infringement in the Field and the area of Oncology and to protect the Program Know-How from unauthorized use in or Outside of the Field and the area of Oncology, when, from its own knowledge or upon notice by the other party, the party with knowledge or receiving notice becomes aware of the reasonable probability that such infringement or unauthorized use exists in or Outside of the Field and the area of Oncology. SECTION 6.8. COOPERATION. If within sixty (60) days of becoming aware of the reasonable probability of an interference or infringement of the Program Patent Rights in the Field and the area of Oncology or unauthorized use of the Program Know-How in the Field and the area of Oncology, the Initial Responsible Party refuses to institute an infringement suit or take other appropriate action that the other party feels is reasonably required to protect the Program Patent Rights and Program Know-How in the Field and the area of Oncology, the other party shall have the right at its sole discretion to institute such suit or other appropriate action in the name of either or both parties. In such event, the Initial Responsible Party shall cooperate with the other party to the extent reasonably possible. SECTION 6.9. NOTICE OF CERTIFICATION. Millennium and Lilly each shall immediately give notice to the other of any certification filed under the U.S. "Drug Price Competition and Patent Term Restoration Act of 1984" claiming that a Program Patent Right is invalid or that any infringement will not arise from the manufacture, use or sale of any product in the Field and the area of Oncology by a third party. If Millennium decides not to bring infringement proceedings against the entity making such a certification, Millennium shall give notice to Lilly of its decision not to bring suit within twenty-one (21) days after receipt of notice of such certification. Lilly - 21 - 22 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. may then, but is not required to, bring suit against the party that filed the certification. Any suit by Lilly or Millennium shall either be in the name of Lilly or in the name of Millennium, or jointly by Lilly and Millennium, as may be required by law. For this purpose, the party not bringing suit shall execute such legal papers necessary for the prosecution of such suit as may be reasonably requested by the party bringing suit. SECTION 6.10. COSTS AND EXPENSES. Lilly shall bear its own costs and expenses in filing, prosecuting, maintaining and extending Lilly Field Patent Rights under this Article VI and shall reimburse Millennium for [**] of Millennium's external costs of filing, prosecuting, maintaining and extending any Millennium Field Patent Rights to which Lilly is licensed under the terms of this Agreement and for which costs are incurred after the Effective Date. The Joint Management Team shall review and have oversight responsibility for all patent matters pertaining to Millennium Field Patent Rights concerning technology relating to the Program. SECTION 6.11. NOTICE OF INFRINGEMENT. If the activities of either party in connection with the Program or as the result of making, using or selling a Product in the Field and the area of Oncology result in a claim of patent infringement or other violation of the intellectual property rights of any third party, the party to this Agreement first having notice of that claim shall promptly notify the other party in writing. The notice shall set forth the facts of the claim in reasonable detail. Except as otherwise provided herein, Lilly shall have the primary obligation to defend against said claim (whether or not it arises as a counterclaim in any infringement action commenced by Millennium hereunder) and to prosecute any counterclaims, or any other claims that may arise in connection with such litigation. Millennium shall cooperate with Lilly in such defense and prosecution and shall have the right to be represented by counsel of its own choice. If Lilly shall fail to diligently commence and continue defense against such claim (or prosecution of any claim or counterclaim), Millennium may assume the primary obligation for such defense or prosecution, and Lilly shall cooperate with Millennium and shall have the right to be represented by counsel of its own choice. Notwithstanding the foregoing, if the claim involves an allegation of a violation of the trade secret rights of a third party, the party accused of such violation shall have the obligation to defend against such claim and shall indemnify the other party against all costs associated with such claim. SECTION 6.12. LITIGATION EXPENSES. Each party shall assume and pay all of its own out-of-pocket costs incurred in connection with all litigation described in this Article VI, including without limitation, the fees and expenses of that party's counsel. - 22 - 23 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. SECTION 6.13. SETTLEMENT APPROVAL. Neither party shall settle any such proceeding without the approval of the other party, which approval shall not be unreasonably withheld. SECTION 6.14. RECOVERY. Any recovery obtained by any party as a result of any proceeding described in this Article VI, by settlement or otherwise, shall be applied in the following order of priority: (a) first, to reimburse each party for all litigation costs in connection with such proceeding paid by that party under Section 6.12 and not otherwise recovered; and (b) second,[**]. SECTION 6.15. PATENT TERM EXTENSIONS. The parties shall cooperate with each other in gaining patent term extension wherever applicable to Program Patent Rights covering Products. The party selling the product shall determine which patents shall be extended. All filings for such extension shall be made by the party to whom the patent is assigned after consultation with the other party, provided, however, that in the event that the party to whom the patent is assigned elects not to file for an extension, such party shall (i) inform the other party of its intention not to file and (ii) grant the other party the right to file for such extension. Article VII ----------- Commercial Diligence -------------------- SECTION 7.1. CANDIDATE GENES. After the term of the Program and during the term of the Lilly Development Program, Lilly shall commit resources to continue research on Candidate Genes sufficient to move each Candidate Gene into Validated Target or Candidate Protein Drug status within three (3) years from the date of the termination or expiration of the Program. If a Candidate Gene does not attain Validated Target or Candidate Protein Drug status within said three (3) year period, then Lilly's exclusive right to use said Candidate Gene in the Field and the area of Oncology shall be converted into a co-exclusive right to use said Candidate Gene in the Field and the area of Oncology, subject to the other terms of this Section 7.1. Millennium may thereafter pursue the creation of a Validated Target or the development of a Candidate Protein Drug from said Candidate Gene the Field and the area of Oncology, and retain rights to therapeutic leads found by Millennium using such a Validated Target or to protein therapeutics based on such Candidate Protein Drug, and proceed with the development of such therapeutic products on its own or sublicense the rights to such therapeutic products and [**]. - 23 - 24 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. Notwithstanding the provisions of the prior paragraph, after the term of the Program and during the term of the Lilly Development Program, [**] of a Validated Target or a Candidate Protein Drug based upon any Candidate Gene if Lilly is [**] which demonstrates [**] if the project succeeds in bringing a Product to the market. SECTION 7.2. VALIDATED TARGETS. During the term of the Program and the Lilly Development Program, Lilly shall diligently screen the Validated Targets to discover and develop Products. Lilly shall screen all Validated Targets within [**] of the date upon which the Validated Target milestone is paid to Millennium pursuant to Section 8.2. If a Validated Target is not screened within [**] of the payment of the milestone, then Lilly's exclusive right to use said Validated Target in the Field and the area of Oncology shall be converted into a co-exclusive right to use said Validated Target in the Field and the area of Oncology, subject to the other terms of this Section 7.2. Millennium may thereafter screen such a Validated Target in the Field and the area of Oncology, and retain rights to therapeutic leads found by Millennium using such a Validated Target, and proceed with the development of such compound on its own or sublicense the rights to such a compound and [**]. After a Validated Target is first screened, Lilly shall screen said Validated Target at least once every [**]. For each Validated Target, Lilly will be deemed to be diligent under this Section 7.2 so long as Lilly presents a compound arising from a screen against such Validated Target to [**] from the use of the Validated Target in a screen. In the event Lilly does not screen against a specific Validated Target within the time period set forth above, or does not present a compound arising from said screen to [**] within the time specified, Lilly's exclusive right to use said Validated Target in the Field and the area of Oncology shall be converted into a co-exclusive right to use said Validated Target in the Field and the area of Oncology, subject to the other terms of this Section 7.2. Millennium may thereafter screen such a Validated Target in the Field and the area of Oncology, provided, however, that such screening efforts shall be deemed to be a Non-Program Field Project subject to Lilly's rights under Section 5.2, except Lilly's rights thereto shall extend for [**] , Millennium may proceed with the development of such compound on its own or sublicense the rights to such a compound and [**]. Lilly shall not be required to continue to screen a Validated Target [**] from the Program in its development program (defined as a program that has been [**], or its successor) which (i) reacts with said Validated Target or which demonstrates the same clinical utility (and no significant clinical advantages) as a compound which reacts with said Validated Target, and (ii) for which [**] from the Program in its development program or its product portfolio which (i) reacts with the Validated Target or which demonstrates the same clinical utility (and no significant clinical - 24 - 25 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. advantages) as a compound which reacts with said Validated Target, and (ii) for which [**]. Furthermore, if Lilly, or its sublicensee, is diligently screening a Validated Target which would lead to compounds with the same clinical utility (and no significant clinical advantages) as a drug identified using other Validated Target, then Lilly's diligent use of the first Validated Target will be deemed to demonstrate diligence for all Validated Targets which would lead to compounds with the same clinical utility (and no significant clinical advantage). SECTION 7.3. PROTEIN PRODUCTS. During the term of the Program and the Lilly Development Program, Lilly shall diligently pursue the development of Candidate Protein Drugs by either continuing the development of the Candidate Protein Drug within the Lilly product development program (defined as a program that has been accepted by Lilly's Project Team Approval Committee, or its successor) or by pursuing [**] said Candidate Protein Drug, provided [**] to the diligence requirements of this Section 7.3. Lilly shall review the feasibility of continuing the development of those Candidate Protein Drugs in the development program on a yearly basis. In the event Lilly abandons the development of a Candidate Protein Drug for reasons other than a [**] , Millennium shall have the right to obtain exclusive rights to such a Candidate Protein Drug so long as (i) there are [**] which demonstrate the same clinical utility (and no significant clinical advantages), and (ii) [**]. In the event [**] with the Candidate Protein Drug, [**] the right to develop and commercialize the Candidate Protein Drug according to the terms set forth in the previous paragraph, or (ii) maintain the exclusive rights to the Candidate Protein Drug and [**]. SECTION 7.4. COMMERCIALIZATION. Lilly agrees to use commercially reasonable efforts to seek regulatory approval in all Major Market Countries for all Products and, upon receipt of such approval, to market and sell such Product in all Major Market Countries. In the event Lilly enters into an arrangement with a third party concerning research, development, registration, marketing and selling of any Product in a Major Market Country, Lilly shall guarantee the diligence of such third party. - 25 - 26 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. SECTION 7.5. MILLENNIUM'S RECIPROCAL OBLIGATIONS. In the event Millennium obtains any rights to Candidate Genes, Validated Targets or Candidate Protein Drugs under this Article VII, and thereafter does not demonstrate the same degree of diligence as is required by Lilly in this Article VII, then Millennium's rights to such Candidate Genes, Validated Targets or Candidate Protein Drugs shall revert back to Lilly. Article VIII ------------ Payments -------- SECTION 8.1. RESEARCH FUNDS. In support of research and development to be conducted by Millennium pursuant to this Agreement, Lilly will make the following payments to Millennium: (a) From the Restatement Effective Date through the end of the fifth Contract Year or, if the Millennium Research Program is extended pursuant to Section 2.7, through the end of such extension, Lilly shall pay to Millennium [**] per FTE to fund the Millennium Research Program, as adjusted in the immediately following sentence for periods subsequent to December 31, 1999 (the "FTE Rate"). On each January 1 thereafter, the FTE Rate shall be increased by an amount equal to the percentage increase, if any, in the United States Consumer Price Index (or any comparable successor index thereto) from the immediately preceding January 1. The FTE Rate for all periods prior to the Restatement Effective Date shall remain as stated in the Original Agreement. (b) From the Effective Date to March 31, 1997, Millennium shall provide (subject to reasonable ramp-up considerations) and Lilly shall fund up to (but not more than the number of FTEs actually provided by Millennium) [**] FTEs for research. From April 1, 1997 to the Restatement Effective Date, Millennium shall provide (subject to reasonable ramp-up considerations) and Lilly shall fund up to (but not more than the number of FTEs actually provided by Millennium) [**] FTEs for research, provided however, that if, in the reasonable judgment of the majority of the Joint Management Team, there is not research and development of sufficient scientific and commercial merit within the Field to justify all [**] FTEs, this number may be reduced but not below [**] FTEs. From the Restatement Effective Date through the end of the fifth Contract Year, Millennium shall provide and Lilly shall fund up to (but not more than the number of FTEs actually provided by - 26 - 27 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. Millennium) [**] FTEs for research. Millennium shall keep Lilly reasonably informed of its plans for research staffing and shall afford Lilly a reasonable opportunity to review such plans and provide input to Millennium. After the Restatement Effective Date through the end of the fifth Contract Year, Millennium shall ensure, for so long as he remains employed by Millennium, that Andy Shyjan (i) remains assigned as Millennium's leader with respect to Millennium Research Program activities, (ii) devotes at least eighty percent (80%) of his employment efforts to Millennium Research Program activities for the six months immediately following the Restatement Effective Date and (iii) devotes one hundred percent (100%) of his employment efforts to Millennium Research Program activities after the date six months subsequent to the Restatement Effective Date, unless the members of the Joint Management Team mutually agree otherwise. After January 1, 1999 through the end of the fifth Contract Year, Millennium shall also ensure that no Millennium employee assigned on a full-time basis to Millennium Research Program activities is reassigned to other activities by Millennium unless (i) Millennium has identified a replacement for such employee prior to such reassignment, (ii) the Joint Management Team has determined that the replacement for such employee has credentials that are acceptably similar to those of the employee to be reassigned and (iii) the Joint Management Team has approved such reassignment, which approval shall not be unreasonably withheld. Millennium shall further ensure that none of the scientists assigned on a full-time basis to the discovery and validation of Candidate Genes and Validated Targets within the Millennium Research Program are at the time completing their post-doctoral fellowships at Millennium. All FTEs shall be deployed by the Joint Management Team in accordance with the provisions of Section 2.3. The numbers set forth above for FTE employees to be provided by Millennium, and funded by Lilly, for research and development from the Effective Date through the end of the Millennium Research Program may be adjusted from time to time by decision of the Joint Management Team, provided, however, that the number of FTEs funded by Lilly shall not be below the minimums set forth above, except by mutual agreement of the parties or as provided by Section 8.1(d), below. (c) Within fifty (15) working days of the execution date of the Original Agreement, Lilly shall pay to Millennium the full amount of the level of FTE funding for the first contract quarter (execution date through June 30, 1996). Within five (5) working days of the first day of each contract - 27 - 28 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. quarter, Lilly shall pay to Millennium the total amount due for the upcoming quarter. Within thirty (30) days of the completion of each contract quarter, Millennium shall provide Lilly with a written statement setting forth the actual numbers of FTEs provided and the funds expended during such contract quarter, and shall provide Lilly with a credit for any amounts overpaid by Lilly or bill Lilly for any amounts underpaid during such contract quarter. (d) If third party collaborative research expenses incurred by Millennium in support of the Program in any Contract Year exceeds an amount equal to the product of [**] multiplied by the number of FTEs for such Contract Year, then Millennium can request, through and with the approval of the Joint Management Team, that Lilly provide additional funding to reimburse Millennium for such excess collaborative research expenses. Nothing in this Section 8.1 relieves Millennium of its obligations to be responsible for all past and future payments of funding, milestones and royalties arising from Millennium's prior third party research agreements. SECTION 8.2. MILESTONES. Upon the achievement of the following milestones, Lilly shall also pay to Millennium the specified milestone payments,[**] in connection with the Net Sales of the Product with respect to which [**]; provided, however, that the [**]: (a) The sum of [**] provided that no more than [**] may qualify for this milestone payment [**] under subsection (b) or [**] under subsection (c). Upon each and every approval of a [**] , the number of [**] . (b) The sum of [**] for the successful [**] . (c) The sum of [**] for each [**] which has been placed into [**]. (d) Upon the [**] or the sum of [**]. (e) Upon the [**] or its equivalent in the first Major Market Country, the sum of [**] or the sum of [**]. (f) Upon [**] or its equivalent in the first Major Market Country, the sum of [**] or the sum of [**] . If Lilly begins the development of a Product and later ceases development of said Product due to lack of efficacy, potency or adverse reactions found in the course of human clinical trials or the Product is not registered after the filing of an NDA, then [**] which reacts with the same [**] and which [**]. SECTION 8.3. ROYALTY PAYMENTS TO MILLENNIUM ON PRODUCTS. In addition to the foregoing, with respect to each calendar quarter, Lilly shall pay to Millennium royalties equal to [**] of Net Sales of Products which are [**] of Net Sales of Products - 28 - 29 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. which are [**] of Net Sales of Products which are either [**]; and [**] of Net Sales of Products which are [**] . Notwithstanding the terms of the prior paragraph, for any Products that are the result, to any extent, of research conducted by Millennium in a [**] with respect to which [**], conducted in accordance with [**] standards, then [**] of Net Sales of such products which are [**] , except as provided in the following paragraph;[**] of Net Sales of such products which are [**] of Net Sales of such products which are [**] of Net Sales of such products which are [**] . If the compound which is the basis of the [**] of Net Sales of such product. In addition, for any [**] that are the result, to any extent, of research conducted by Millennium in a [**] with respect to which [**] conducted in accordance with [**] standards capable of fulfilling such requirements for an [**] (or its equivalent) in any Major Market Country, then [**] of Net Sales of such products which are [**]. If the Joint Management Team decides that it is desirable to have a third party provide support on the Program (a "Third Party Collaborator"), and in an agreement between Lilly or Millennium and such Third Party Collaborator payment by either Millennium or Lilly of a royalty on the sale of Products is required, then Millennium and Lilly, at that time shall discuss in good faith whether an increase or decrease in the royalty on Net Sales of Products payable to Millennium under this Agreement is appropriate, and if agreed shall negotiate and agree to such an increase or decrease in royalty. SECTION 8.4. LENGTH OF ROYALTY PAYMENTS. The royalties payable under Sections 8.3 shall be paid on a country-by-country basis from the date of first commercial sale of each Product in a particular country until the expiration of the last to expire Lilly Field Patent Right or Millennium Field Patent Right owned by Millennium or Lilly or any of their respective Affiliates in such country with respect to which a Valid Claim covers the manufacture, use or sale of such Product, or until ten (10) years after such first commercial sale in such country, whichever is longer. SECTION 8.5. ROYALTY ADJUSTMENT. If (i) Lilly sells a Product in any country for which there is no Valid Claim which, if legally enforced, would prevent the making, using or selling of a competing product in that country, (ii) such competing product is generically equivalent to the Product, and (iii) [**] in any given two (2) year period, as measured against the year prior to the year in which the competing product was introduced, then the royalty payable by Lilly in any such country shall - 29 - 30 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. [**] under Section 8.3 of this Agreement. [**] shall be retroactive to the first year used to calculate the two (2) year period and Lilly's future royalty payments shall be [**] made within the two (2) year period. If (i) Lilly sells a Product in any country for which there is no Valid Claim which, if legally enforced, would prevent the making, using or selling of a competing product in that country, (ii) such competing product [**] as the Product, and (iii) [**] in any given two (2) year period, as measured against the year prior to the year in which the competing product was introduced, then the royalty payable by Lilly in any such country shall [**] under Section 8.3 of this Agreement. This [**] shall be retroactive to the first year used to calculate the two (2) year period and Lilly's future royalty payments shall be [**] made within the two (2) year period. SECTION 8.6. SALES TO AFFILIATE. Sales of Products between Lilly and its permitted sublicensees or Affiliates, or among such Affiliates and permitted sublicensees, shall not be subject to the royalty, but in such cases the royalty shall be calculated upon Lilly's or its sublicensee's or Affiliate's Net Sales to an independent third party. SECTION 8.7. ROYALTIES PAYABLE ONLY ONCE. The obligation to pay royalties is imposed only once with respect to the same unit of Product. Except as specifically provided in this Agreement, it is understood and agreed that there shall be no deductions from the royalties payable hereunder. Article IX ---------- Accounting ---------- SECTION 9.1. ROYALTY REPORTS. Lilly shall deliver to Millennium within sixty (60) days after the end of each calendar quarter a written accounting, of Lilly's and its Affiliates and sublicensees' sales and other consideration received subject to royalty payment due to Millennium for such quarter. Such quarterly reports shall indicate the Net Sales of Products on a country-by-country basis. SECTION 9.2. DELIVERY OF ROYALTY. When Lilly delivers the accounting to Millennium, Lilly shall also deliver all royalty payments due to Millennium for the calendar quarter. SECTION 9.3. AUDITS. Lilly shall keep accurate records in sufficient detail to enable the amounts due to Millennium to be determined. Within the term of this Agreement and within one year after its termination, Millennium shall not more than - 30 - 31 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. once each year have the right at its expense to have Lilly's independent certified public accountants inspect Lilly's records for any of the two preceding years for the purpose of determining the accuracy of royalty payments. The independent certified accountants shall keep confidential any information obtained during such inspection and shall report to Millennium only the amounts of royalties due and payable. If Lilly has underpaid a royalty amount due under this Agreement by more than five percent (5%), Lilly shall promptly pay the appropriate amount to Millennium and shall also reimburse Millennium for the cost of such audit. SECTION 9.4. EXCHANGE RATES. All payments to be made by Lilly to Millennium under this Agreement shall be made in United States dollars. In the case of sales outside the United States, the rate of exchange to be used in computing the amount of currency equivalent in United States dollars due Millennium shall be made using Lilly's then current standard exchange rate methodology, which methodology shall be in conformity with generally accepted accounting principles. SECTION 9.5. MILLENNIUM'S OBLIGATIONS. The accounting and payment obligations set forth in this Article IX shall also apply to Millennium in the case of Gene Therapy Products and Diagnostic Products sold by Millennium, its Affiliates or sublicensees, upon which a royalty is due Lilly hereunder, and in which case all references to Lilly shall mean Millennium and all references to Millennium shall mean Lilly. SECTION 9.6. WITHHOLDING TAXES. The party who pays a royalty hereunder to the other party shall have no liability for any income taxes levied against such other party on account of such royalties. If laws or regulations require that any such taxes be withheld by the party paying the royalty, such party shall deduct such taxes from the payment due the other party, pay the taxes so withheld to the proper taxing authority, and send proof of payment to the other party within thirty (30) days following such payment. If the other party desires to obtain a refund of any taxes so withheld and paid to a taxing authority, upon request the party who withheld and paid such taxes shall cooperate in the pursuit of such refund. Article X --------- Corporate Control ----------------- In the event that a third party makes an unsolicited offer to purchase all or substantially all of the assets or securities of Millennium or proposes a merger or similar transaction, or in the event that Millennium's Board of Directors determines to seek proposals for or the sale of all or substantially all of the assets of Millennium or the merger or consolidation with a third party, then Millennium, to the extent consistent with applicable law and the fiduciary duties of the Board of Directors of Millennium, as reasonably determined by the Board of Directors of Millennium, shall - 31 - 32 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. notify Lilly thereof and shall provide Lilly with the opportunity to engage in discussions with Millennium regarding such a transaction. Article XI ---------- Duration -------- This Agreement becomes effective as of the Effective Date, may be terminated as set forth in Article XII hereof, and otherwise remains in effect until the expiration of the term of Lilly's or Millennium's obligation to pay royalties. Notwithstanding the foregoing, Article IV and Article V shall remain in effect for the respective periods stated therein. Article XII ----------- Termination ----------- SECTION 12.1. TERMINATION FOR MATERIAL BREACH. Upon any material breach by either party under this Agreement, the other party may terminate this Agreement by ninety (90) days' written notice to the breaching party, specifying the material breach, default or other defect. The termination becomes effective at the end of the ninety (90) day period unless the breaching party cures the breach during the ninety (90) day period. The parties will use best efforts to work together to cure any breach. SECTION 12.2. RIGHTS UPON TERMINATION FOR BREACH. If a party (the "Non- Breaching Party") terminates this Agreement under Section 12.1 following material breach by the other party (the "Breaching Party"), (a) the Breaching Party shall return to the Non-Breaching Party all Confidential Information and materials received from the Non-Breaching Party after the Effective Date, (b) the Breaching Party shall cease all use of the Confidential Information and materials received from the Non- Breaching Party for any purpose, except that the Breaching Party may keep a copy of all documents for record keeping purposes only, (c) the Breaching Party shall deliver to the Non-Breaching Party all data and information developed by the Breaching Party prior to such termination as a result of the Program which can reasonably be viewed as necessary or useful to obtain governmental regulatory approvals, (d) subject to any agreements with third parties, the [**] and shall have [**], and (e) the licenses granted under Article V to the Breaching Party shall terminate and the licenses granted under Article V to the Non-Breaching Party shall continue. SECTION 12.3. VOLUNTARY TERMINATION BY AGREEMENT. The parties may agree to terminate the Millennium Research Program at any time after the first twenty-four (24) months of the Program. If the Millennium Research Program is voluntarily - 32 - 33 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. terminated under this Section 12.3, all rights and obligations under this Agreement concerning the making, using or selling of all Candidate Genes, Candidate Protein Drugs and Validated Targets already produced by the Program, and any future Products arising therefrom, shall not be affected by the termination of the Program. Following any termination of the Millennium Research Program under this Section 12.3, Millennium shall have the right to undertake, either alone or in collaboration with a third party, research, development and commercialization in the Field, including research, development and commercialization that utilizes Millennium Field Know-How and/or is covered by Millennium Field Patent Rights, other than research, development and commercialization in the Field exclusively related to Candidate Genes, Candidate Protein Drugs and Validated Targets already produced by the Program and any future Products arising therefrom. SECTION 12.4. KEY PERSONNEL. During the term of the Millennium Research Program,[**] , for any reason, Lilly may voluntarily terminate the Millennium Research Program upon thirty (30) days written notice to Millennium if within one hundred twenty (120) days following the departure of the last to leave of said individuals Millennium is unable to select replacements for such individuals that are reasonably acceptable to Lilly. If the Millennium Research Program is voluntarily terminated under this Section 12.4, all rights and obligations under this Agreement concerning the making, using or selling of all Candidate Genes, Candidate Protein Drugs and Validated Targets already produced by the Program, and any future Products arising therefrom, shall not be affected by the termination of the Program. Following any termination of the Millennium Research Program under this Section 12.4, Millennium shall have the right to undertake, either alone or in collaboration with a third party, research, development and commercialization in the Field, including research, development and commercialization that utilizes Millennium Field Know-How and/or is covered by Millennium Field Patent Rights, other than research, development and commercialization in the Field exclusively related to Candidate Genes, Candidate Protein Drugs and Validated Targets already produced by the Program and any future Products arising therefrom. SECTION 12.5. CHANGE OF CONTROL. Lilly may terminate the Millennium Research Program upon thirty (30) days written notice if at any time majority control of Millennium is acquired by any health care company or any other party reasonably deemed to be a competitor of Lilly. If the Millennium Research Program is voluntarily terminated under this Section 12.5, all rights and obligations under this Agreement concerning the making, using or selling of all Candidate Genes, Candidate Protein Drugs and Validated Targets already produced by the Program, and any future Products arising therefrom, shall not be affected by the termination of the - 33 - 34 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. Program. Following any termination of the Millennium Research Program under this Section 12.5, Millennium shall have the right to undertake, either alone or in collaboration with a third party, research, development and commercialization in the Field, including research, development and commercialization that utilizes Millennium Field Know-How and/or is covered by Millennium Field Patent Rights, other than research, development and commercialization in the Field exclusively related to Candidate Genes, Candidate Protein Drugs and Validated Targets already produced by the Program and any future Products arising therefrom. SECTION 12.6. VOLUNTARY TERMINATION BY LILLY. If at any time after the first thirty-six (36) months of the Millennium Research Program, Lilly decides to voluntarily terminate the Millennium Research Program, Lilly may do so by providing to Millennium ninety (90) days notice of such termination, and by paying to Millennium the value of the FTE payments which otherwise would have been due between the date of such notice and the twelve (12) month period following such notice. If the Millennium Research Program is voluntarily terminated under this Section 12.6, all rights and obligations under this Agreement concerning the making, using or selling of all Candidate Genes, Candidate Protein Drugs and Validated Targets already produced by the Program, and any future Products arising therefrom, shall not be affected by the termination of the Program. Following any termination of the Millennium Research Program under this Section 12.6, Millennium shall have the right to undertake, either alone or in collaboration with a third party, research, development and commercialization in the Field, including research, development and commercialization that utilizes Millennium Field Know-How and/or is covered by Millennium Field Patent Rights, other than research, development and commercialization in the Field exclusively related to Candidate Genes, Candidate Protein Drugs and Validated Targets already produced by the Program and any future Products arising therefrom. SECTION 12.7. RESIDUAL RIGHTS. Upon expiration or early termination of this Agreement, except as provided herein to the contrary, all rights and obligations of the parties shall cease, except as follows: (a) Obligations to pay royalties and other sums accruing hereunder up to the date of termination; (b) The right to complete the manufacture and sale of Products, which qualify as "work in process" under generally accepted cost accounting standards or which are in stock at the date of termination, and the obligation to pay royalties on Net Sales of such products; (c) The obligation to pay milestones as achieved and royalties with respect to Products; (d) All provisions regarding confidentiality shall continue in full force and effect; (e) Obligations for record keeping and accounting reports for so long as Products are sold. At such time after termination of this Agreement - 34 - 35 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. when sales or other dispositions of products have ceased, Lilly shall render a final report along with any royalty payment due; (f) Millennium's (and/or Lilly's) rights to inspect books and records as described in Article IX; (g) Obligations of defense and indemnity; (h) Obligations set forth in Sections 6.10-6.14 but only with respect to those causes of action which accrued prior to such termination; (i) Any cause of action or claim of Millennium or Lilly accrued or to accrue because of any breach or default by the other party hereunder; (j) All other terms, provisions, representations, rights and obligations contained in this Agreement that by their sense and context are intended to survive until performance thereof by either or both parties. SECTION 12.8. RIGHTS TO WORK IN PROCESS. Within three (3) months following the expiration of the Millennium Research Program, Lilly may designate any potential Candidate Gene as a Candidate Gene, any potential Candidate Protein Drug as a Candidate Protein Drug and/or any potential Validated Target as a Validated Target, provided, however, that at the time of such designation(s) Lilly shall pay to Millennium the appropriate milestone payment(s) set forth in Article XVII. Upon any such designation(s), each designated Candidate Gene, Candidate Protein Drug and/or Validated Target shall be subject to all terms and conditions of this Agreement that relate to any Candidate Gene, Candidate Protein Drug and/or Validated Target. Article XIII ------------ Product Liability Indemnification --------------------------------- Lilly agrees to defend Millennium at Lilly's cost and expense, and will indemnify and hold Millennium and its directors, officers, employees and agents (the "Millennium Indemnified Parties") harmless from and against any losses, costs, damages, fees or expenses arising out of any claim relating to personal injury from the development, manufacture, use, sale or other disposition of any Product. In the event of any such claim against the Millennium Indemnified Parties by any party, Millennium shall promptly notify Lilly in writing of the claim and Lilly shall manage and control, at its sole expense, the defense of the claim and its settlement. The Millennium Indemnified Parties shall cooperate with Lilly and may, at their option and expense, be represented in any such action or proceeding. Lilly shall not be liable for any litigation costs or expenses incurred by the Millennium Indemnified parties without Lilly's prior written authorization. In addition, Lilly shall not be responsible for the indemnification of any Millennium Indemnified Party arising from any negligent or intentional acts by such party. - 35 - 36 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. Article XIV ----------- Good Faith Negotiation/Dispute Resolution ----------------------------------------- Any controversy, claim, or dispute arising out of or relating to this Agreement shall be settled if possible through good faith negotiations between the parties. Only if such efforts are not successful shall such dispute be resolved by arbitration (if agreed by the parties) or litigation. Article XV ---------- Governing Law ------------- This Agreement shall be construed and the respective rights of the parties hereto determined according to the substantive laws of the State of Delaware notwithstanding the provisions governing conflict of laws under such Delaware law to the contrary. Article XVI ----------- Assignment ----------- Neither party may assign this Agreement in whole or in part without the consent of the other, except if such assignment occurs in connection with the sale or transfer of all or substantially all of the business and assets of Millennium or Lilly. Article XVII ------------ Insolvency ---------- The parties hereto intend that the Agreement shall not be deemed an executory contract under the Bankruptcy or Insolvency laws of the United States. Article XVIII ------------- Amendments ---------- This Agreement constitutes the entire agreement between the parties and supersedes all previous arrangements whether written or oral, including the Original Agreement, as amended. Any amendment or modification to this Agreement shall be made in writing signed by both parties. - 36 - 37 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. Article XIX ----------- Notices ------- Notices to Millennium shall be addressed to: Millennium Pharmaceuticals, Inc. 238 Main Street Cambridge, Massachusetts 02142 Attention: Chief Executive Officer Facsimile No.: [(617) 621-0264] with a copy to: Attention: Legal Department Notices to Lilly shall be addressed to: Eli Lilly and Company, Inc. Lilly Corporate Center Indianapolis, Indiana 46285 Attention: Vice-President, Oncology Discovery and Clinical Development Research Facsimile No.: (317) 277-3652 with a copy to: Attention: General Counsel Either party may change its address by giving notice to the other party in the manner herein provided. Any notice required or provided for by the terms of this Agreement shall be in writing and sent by registered or certified mail, return receipt requested, postage prepaid and properly addressed in accordance with the paragraph above. The effective date of notice shall be the actual date of receipt by the party receiving the same. Article XX ---------- Force Majeure ------------- No failure or omission by the parties hereto in the performance of any obligation of this Agreement shall be deemed a breach of this Agreement or create - 37 - 38 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. any liability if the same shall arise from any cause or causes beyond the control of the parties, including, but not limited to, the following: acts of God; acts or omissions of any government; any rules, regulations or orders issued by any governmental authority or by any officer, department, agency or instrumentality thereof; fire; storm; flood; earthquake; accident; war; rebellion; insurrection; riot; and invasion and provided that such failure or omission resulting from one of the above causes is cured as soon as is practicable after the occurrence of one or more of the above-mentioned causes. Article XXI ----------- Representations and Warranties ------------------------------ SECTION 21.1. REPRESENTATION OF AUTHORITY. Millennium and Lilly each represents and warrants to the other that as of the date of execution hereof it has full right, power and authority to enter into this Agreement, including the right to grant the licenses and sublicenses granted under Articles V hereof and provide the Know- How under Articles III hereof, including the biological materials, subject to the limitations set forth in this Section 21.1. Millennium has furnished Lilly with a copy of all license agreements and options pertaining to the Millennium Field Patent Rights and Millennium Field Know-How existing as of the Effective Date, and by its execution and delivery of the Original Agreement, Lilly agreed to be bound by the terms of such agreements to the extent required thereby. SECTION 21.2. OUTSTANDING AGREEMENTS. Appendix B lists all material outstanding options, licenses or agreements of any kind between Millennium and any third party relating to Millennium Field Patent Rights and Millennium Field Know- How as of the Effective Date. SECTION 21.3. KNOWLEDGE OF PENDING OR THREATENED LITIGATION. Each party represents and warrants to the other that it is not aware of any pending or threatened litigation (and has not received any communication) which alleges that such party's activities in the Field to date have violated, or by conducting its business as currently proposed under the Program contemplated herein would violate, any of the intellectual property rights of any other person. To the best of each party's knowledge, there is no material unauthorized use, infringement or misappropriation of any of its intellectual property rights licensed hereunder to the other party. SECTION 21.4. EMPLOYEE OBLIGATIONS. Each party represents and warrants that all of its employees, officers, and consultants have executed agreements or have existing obligations under law requiring, in the case of employees and officers, assignment to such party of all inventions made during the course of and as the result of their association with such party and obligating the individual to maintain as confidential such party's Confidential Information as well as confidential - 38 - 39 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. information of a third party which such party may receive, to the extent required to support such party's obligations under this Agreement. Article XXII ------------ Public Announcements -------------------- SECTION 22.1. PRESS RELEASES AND ANNOUNCEMENTS. Any announcements or similar publicity with respect to the execution of this Agreement shall be agreed between the parties in advance of such announcement. Lilly understands that this Agreement and Millennium's efforts hereunder are likely to be of significant interest to investors, analysts and others, and Millennium therefore intends to make such public announcements with respect thereto. Millennium agrees that any such announcement will not contain confidential business or technical information and, if disclosure of confidential business or technical information is required by law or regulation, will make reasonable efforts to minimize such disclosure and obtain confidential treatment for any such information which is disclosed to a governmental agency or group. Each party agrees to provide to the other party a copy of any public announcement as soon as reasonably practicable under the circumstances prior to its scheduled release. Except under extraordinary circumstances, each party shall provide the other with an advance copy of any press release at least five (5) working days prior to the scheduled disclosure. Each party shall have the right to expeditiously review and recommend changes to any announcement regarding this Agreement or any studies carried out under this Agreement. Except as otherwise required by law, the party whose press release has been reviewed shall remove any information the reviewing party reasonably deems to be inappropriate for disclosure. SECTION 22.2. PUBLICATIONS. The parties acknowledge that scientific lead time is a key element of the value of the research to be performed under this Agreement and further agree that scientific publications must be strictly monitored to prevent any adverse effect of premature publication. The Joint Management Team will establish a procedure for publication review and approval and each party shall first submit to the Joint Management Team an early draft of all such publications, whether they are to be presented orally or in written form, at least sixty (60) days prior to submission for publication. The Joint Management Team shall review each such proposed publication in order to avoid the unauthorized disclosure of a party's Confidential Information and to preserve the patentability of inventions arising from the research performed in the course of the Program. If, within thirty (30) days of receipt of an advance copy of a party's proposed publication, the Joint Management Team informs such party that its proposed publication contains Confidential Information of the other party, then such party shall delete such Confidential Information from its proposed publication. If, within thirty (30) days of receipt of an advance copy of a party's proposed publication, the Joint Management Team informs such party that its proposed publication could be expected to have a material adverse effect on any Program Patent Rights or Program Know-How, then such party shall - 39 - 40 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. delay such proposed publication, sufficiently long to permit the timely preparation and filing of a patent application(s) on the information involved. If, within forty five (45) days of receipt of an advance copy of a party's proposed publication, the Joint Management Team fails to approve of such party's proposed publication, then such proposed publication shall be regarded as denied by the Joint Management Team and shall not be published. Article XXIII ------------- Additional Agreements --------------------- SECTION 23.1. INDEPENDENT CONTRACTORS. It is understood and agreed that the relationship between the parties hereunder is that of independent contractors and that nothing in this Agreement shall be construed as authorization for either Lilly or Millennium to act as agent for the other. Members of the Joint Management Team shall be, and shall remain, employees of Millennium or Lilly, as the case may be. Neither party shall incur any liability for any act or failure to act by members of the Joint Management Team who are employees of the other party. SECTION 23.2. CONSENTS NOT UNREASONABLY WITHHELD. Whenever provision is made in this Agreement for either party to secure the consent or approval of the other, that consent or approval shall not unreasonably be withheld, and whenever in this Agreement provisions are made for one party to object to or disapprove a matter, such objection or disapproval shall not unreasonably be exercised. SECTION 23.3. NO STRICT CONSTRUCTION. This Agreement has been prepared jointly and shall not be strictly construed against either party. SECTION 23.4. HEADINGS. The captions or headings of the Sections or other subdivisions hereof are inserted only as a matter of convenience or for reference and shall have no effect on the meaning of the provisions hereof. SECTION 23.5. SEVERANCE OF CLAUSES. Each party agrees that, should any provision of this Agreement be determined by a court of competent jurisdiction to violate or contravene any applicable law or policy, such provision will be severed or modified by the court to the extent necessary to comply with the applicable law or policy, and such modified provision and the remainder of the provisions hereof will continue in full force and effect. SECTION 23.6. NO WAIVER. The waiver of a breach hereunder may be effected only by a writing signed by the waiving party and shall not constitute a waiver of any other breach. - 40 - 41 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. IN WITNESS WHEREOF, this Agreement is executed this 28 day of December, 1998 to be effective as of the Effective Date. ELI LILLY AND COMPANY, INC. MILLENNIUM PHARMACEUTICALS, INC. By: /S/AUGUST M. WATANABE, M.D. By: /S/STEVEN H. HOLTZMAN ----------------------------- ---------------------- August M. Watanabe, M.D. Steven H. Holtzman Vice President and President, Chief Business Officer Lilly Research Laboratories December 28, 1998 December 28, 1998 - 41 - 42 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. APPENDIX A Millennium Research Program To be provided. - 42 - EX-10.55 3 AMEND NO. 1 TO COLLABORATIVE RESEARCH AGREEMENT 1 EXHIBIT 10.55 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. AMENDMENT NO. 1 TO COLLABORATIVE RESEARCH AGREEMENT AND LICENSE OPTION, LICENSE AND ROYALTY AGREEMENT EACH DATED AS OF JANUARY 1, 1995 This Agreement dated as of December 1998 by and between Pfizer Inc, a Delaware corporation having an office at 235 East 42nd Street, New York, New York 10017 (together with its Affiliates, "Pfizer") and Millennium Pharmaceuticals, Inc., a Delaware corporation having an office at 238 Main Street, Cambridge, Massachusetts 02142 (together with its Affiliates, "Millennium"). Whereas, Pfizer and Myco Pharmaceuticals, Inc. ("Myco") entered into a Collaborative Research Agreement dated as of January 1, 1995 (the "Research Agreement") and a License Option, License and Royalty Agreement dated as of January 1, 1995 (the "License Agreement" and together with the Research Agreement, the "1995 Agreements"); and Whereas, Millennium is the successor in interest to Myco under the 1995 Agreements; and Whereas, Pfizer and Millennium wish to extend the Research Program under the Research Agreement, modify the scope of the research and other licenses thereunder and under the License Agreement, and amend certain other provisions of the 1995 Agreements; NOW THEREFORE, the parties agree as follows: 1. Amendments to the Research Agreement 1.1 The term "Millennium" shall replace the term "Myco" wherever the latter appears in the Research Agreement. 1.2 Section 1 is hereby amended by adding the phrase", subject to such written amendment as the parties, acting through the Research Committee, may adopt from time to time," at the end of the existing text of Section 1.9 and by deleting -1- 2 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. the existing definitions after Section 1.18 and adding the following new definitions after the text of Section 1.18: "1.19 `Patent Rights" shall mean the issued patents and pending applications, whether domestic or foreign, claiming all inventions within Program Technology and all inventions made by Pfizer using Program Technology during the Exclusivity Period including all continuations, continuations-in-part, division and renewals, all letters patent granted thereon, and all reissues, reexaminations and extensions thereof." "1.20 `Product' means an Antifungal Drug the manufacture, use, sale, offer for sale or importation of which in the absence of a license would infringe a claim within Patent Rights." "1.21 `Cost/person year' means, in the first four Commitment Years of the Contract Period, [**]; and, in the fifth and sixth Commitment Years of the Contract Period, [**] "1.22 `Program Technology' means, collectively, Millennium Program Technology, Pfizer Program Technology and Joint Technology." "1.23 `Program Materials' means any biological, synthetic chemical and biochemical materials that are part of Program Technology." "1.24 `Target' means any Program Technology consisting of any gene or protein encoded by such gene which in the course of the Research Program is identified as a potentially useful target for the identification or development of Antifungal Drugs." "l.25 `[**]' means the [**]." "1.26 `[**]' means any Product acting at the [**]." "1.27 `Exclusivity Period' means the period beginning January 1, 1999 and ending on the first to occur of (a) the third anniversary of the conclusion of the Contract Period or (b) the second anniversary of the conclusion of the Contract Period if, before such anniversary, Millennium has notified Pfizer that Millennium is exercising its option to shorten such period so that it ends on said second anniversary." "1.28 `Candidate Product' means a compound (a) which Pfizer identifies in the course of the Research Program or the Exclusivity Period, and (b) which Pfizer believes satisfies (1) a Profile of Activity and (2) an appropriate safety profile and (c) which Pfizer believes is a bona fide candidate for development as an Antifungal Drug." "1.29 `Lead' means a compound (a) which is identified in a screen employing a Target and (b) which Pfizer selects to begin structural modification to yield a Candidate Product." -2- 3 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. 1.3 The membership of the Research Committee, as provided by Section 2.2, is hereby amended to be as follows: Pfizer Appointees: [**] [**] [**] Millennium Appointees: [**] [**] [**] 1.4 Section 3.1 is hereby amended and restated in its entirety to read as follows: "3.1 The Annual Commitment for each Commitment Year is as follows: Commitment Year Annual Commitment [**] [**] [**] [**] [**] [**] [**] [**] [**] [**] [**] [**]" 1.5 Section 4.1.1 is hereby amended and restated in its entirety to read as follows: "4.1.1 Pfizer and Millennium each recognize that the other's Confidential Information constitutes highly valuable confidential information. Subject to the terms and conditions of the License Option, License and Royalty Agreement of even date with this Agreement (the "License Agreement"), the obligations set forth in Section 4.3 and the publication rights set forth in Section 4.2, Pfizer and Millennium each agree that during the term of this Agreement and during the Exclusivity Period, it will keep confidential, and will cause its Affiliates to keep confidential, all Millennium Confidential Information or Pfizer Confidential Information, as the case may be, that is disclosed to it or to any of its Affiliates under this Agreement. Neither Pfizer nor Millennium or any of their respective Affiliates shall use such Confidential Information of the other party except as expressly permitted in this Agreement or the License Agreement." -3- 4 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. 1.6 Section 4.5 is hereby amended and restated in its entirety to read as follows: "4.5 RESTRICTIONS ON TRANSFERRING PROGRAM MATERIALS. Pfizer and Millennium recognize that Program Materials represent valuable commercial assets. During the Exclusivity Period, neither party shall transfer to a third party any Program Materials, unless such transfer is (1) first approved in writing by the other party or (2) otherwise expressly permitted by this Agreement or the License Agreement; provided that the foregoing restriction shall not apply to Pfizer Non-Program Technology in the case of Pfizer or to Millennium Non-Program Technology (including improvements to Millennium Non-Program Technology made in the course of the Research Program) in the case of Millennium." 1.7 Section 5.2 is hereby amended and restated to read in its entirety as follows: "5.2 GRANTS OF RESEARCH LICENSES. (a) Millennium and Pfizer each hereby grants to the other a nonexclusive, irrevocable, worldwide, royalty-free, perpetual license, including the right to grant sublicenses to Affiliates to make and use Confidential Information, Program Technology and Patent Rights for all research purposes. (b) During the exclusivity Period, Pfizer shall have the exclusive right to seek Products based on the Program Technology. (c) Notwithstanding the provisions of Subsection 5.2(b), if during the exclusivity Period Pfizer withdraws its medicinal chemistry program associated with the [**], Pfizer shall so notify Millennium in writing and Millennium shall then have the right, exercisable within 90 days of such notice, to obtain from Pfizer (1) an exclusive royalty-fee research license for the [**] to discover Products (the "NMT Research License"); (2) subject to Pfizer's exclusive reservation set forth in Section 2.2 of the License Agreement, an exclusive, royalty-bearing, worldwide license to make, use, sell, offer for sale and import Products discovered using the NMT Research License (the "NMT Commercial License"); (3) copies of, and the right to use under the NMT Research License, Pfizer Confidential Information relating to the NMT program and (4) up to six different samples, each of 50 milligrams, selected by Millennium from among the analogues prepared by Pfizer in the course of its medicinal chemistry program associated with the [**], to the extent such samples are then available. Pfizer shall be under no obligation to re-synthesize any compounds in order to provide Millennium with such samples." -4- 5 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. 1.8 Section 5.4 is hereby amended to add the following phrase before the first sentence of the existing text "Subject to the obligations to pay royalties on products set forth in Section 3.2 of the License Agreement". Further, Section 5.4 is hereby amended so that the term "Program Technology" replaces the term "Joint Technology" wherever the latter appears, and so that the term "Patent Rights" replaces the term "Joint Patent Rights" wherever the latter appears. 1.9 Section 9.1 is hereby amended so that the term "December 31, 2000" replaces the term "December 31, 1998." 2. Amendments to the License Agreement 2.1 The term "Millennium" shall replace the term "Myco" wherever the latter appears in the License Agreement. 2.2 Sections 2.1 and 2.2 are amended and restated to read in their entirety as follows: "2.1 Licenses Under the Patent Rights. (a) Subject to the provisions of Section 2.1(c) below, Millennium hereby grants Pfizer an exclusive license ("License"), including the right to grant sublicenses, under the Patent Rights to make, use, sell, offer for sale and import any Product for human pharmaceutical purposes. (b) Subject to the provisions of Section 5.2(b) of the Research Agreement, Pfizer hereby grants Millennium an exclusive license, including the right to grant sublicenses, under the Patent Rights to make, use, sell, offer for sale and import Program Technology for research purposes [**] after the end of the Exclusivity Period. (c) Whenever Pfizer, in the course of the Research Program or during the Exclusivity Period, identifies a Candidate Product, then Pfizer shall so notify Millennium and issue a "Candidate Alert Notice" or equivalent in accordance with Pfizer's internal procedures. Pfizer shall then have [**] in which to determine whether to pursue the development of such Candidate Product. If Pfizer determines to pursue the development of such Candidate Product, it will be treated as a Product under Section 2.1(a) above. If Pfizer does not pursue the development of such Candidate Product, Pfizer shall nevertheless have the right to reconsider such Candidate Product during the [**] period following its decision not to pursue its -5- 6 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. development. If Pfizer does not pursue the development of such Candidate Product during such time period, Millennium will be free to develop and commercialize such Candidate Product itself or with third parties after the expiration of such [**] time period, provided however that Millennium shall not have such right if (1) Pfizer discontinues development of such Candidate Product because of Pfizer's determination, in its sole unfettered discretion, that the Candidate Product is unsafe or (2) Pfizer is developing or selling a Product with the same Profile of Activity. If Millennium commercializes such Candidate Product, Millennium shall be obligated to pay Pfizer a royalty with respect to commercial sales of such Product, as set forth in Section 3.10 hereof. In such circumstances, Pfizer shall have no rights to such Candidate Product or any resulting Product. 2.2 OPTION EXERCISE BY PFIZER AS TO POTENTIAL [**] IDENTIFIED BY MILLENNIUM. (a) Millennium hereby grants Pfizer the option to acquire an exclusive, worldwide, royalty-bearing license to commercialize any [**] arising under an NMT Research License obtained by Millennium under Section 5.2(c) of the Research Agreement. (b) If Millennium identifies any potential [**] arising under an NMT Research License and if Millennium thereupon decides, using a format substantially similar to a Candidate Product, to nominate such potential [**] for development, Millennium will notify Pfizer within [**] of such decision and will supply Pfizer, as Pfizer may request before or after such notification, with all Millennium Confidential Information relating to such potential [**]. Pfizer shall have a period of [**] following such notification in which to exercise the option as to that potential [**]." 2.3 Section 2.3 is hereby amended to read in its entirety as follows: "Unless terminated earlier as provided below, the licenses granted hereunder shall terminate on the date of the last to expire of the Patent Rights." 2.4 Section 3.1 is hereby amended by renumbering and recaptioning "3.1 Payment of Royalties" as "3.1(a) Payment of Royalties by Pfizer" and adding, after the end of the existing text, the following text; "3.1(b) PAYMENT OF ROYALTIES BY MILLENNIUM. During the term of any license granted by Pfizer to Millennium to commercialize any [**] pursuant to Section 5.2(c) of the Research Agreement, Millennium shall pay Pfizer a royalty equal to [**] of the Net Sales of such [**]. Such -6- 7 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. royalties shall be determined and paid in the same manner as Pfizer would be required by the terms of this Agreement to determine and pay royalties." 2.5 Section 3.2.3 is hereby amended and restated to read in its entirety as follows: "3.2.3 (a) The royalty paid by Pfizer to Millennium for any (i) Product or (ii) therapeutic or prophylactic product for human pharmaceutical use made under the licenses granted in Section 5.4 of the Research Agreement, in each case for which Pfizer identifies a Lead during the Exclusivity Period, shall be the sum of the Net Sales in each Tier multiplied by the applicable royalty rate for that Tier as follows:
Minimum Royalty Rates Net Sales in Millions of Royalty Rates as a as a Percentage of Net Dollars ("Tiers") Percentage of Net Sales Sales - -------------------------- -------------------------- ------------------------- [**] [**] [**] [**] [**] [**] [**] [**] [**] [**] [**] [**] [**] [**] [**]
Except for the deduction permitted by Section 3.2.4 and the credit permitted by Section 3.8, the Minimum Royalty Rate in the third column above is the absolute minimum after all offsets and deductions permitted under this Agreement. (b) The royalty paid by Pfizer to Millennium for any (i) Product or (ii) therapeutic or prophylactic product for human pharmaceutical use made under the licenses granted in Section 5.4 of the Research Agreement, in each case for which Pfizer identifies a Lead after the Exclusivity Period shall be 5% of the Net Sales of such Product or such product." 2.6 Section 3.2 is hereby further amended by adding, after Subsection 3.2.3, a new Subsection 3.2.4 reading as follows: "3.2.4 (a) If Millennium or any Millennium sublicensee develops and sells a Product that acts at the same Target as a Product sold by Pfizer, Pfizer's royalty obligations to Millennium under Section 3.2.3 shall be calculated on a country-by-country basis using a percentage equal to [**] of the relevant percentage -7- 8 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. shown in Section 3.2.3 for any country in which Millennium or any Millennium sublicensee sells such product." 2.7 Section 3.6 is hereby amended to add, at the end of the first sentence of the existing text, the following phrase; ", for a period ending with the expiration of the last European or United States patent covering such Product." 2.8 Section 3.8 is hereby amended by renumbering and recaptioning the existing text as "3.8.1 Milestones -- General" and by adding the phrase "Except as provided in Subsection 3.8.2" before the existing text and by adding, after the existing text, a new Subsection 3.8.2 reading as follows; "3.8.2 Milestones -- [**] If Pfizer exercises its option pursuant to Section 2.1 (a)(ii) to license from Millennium the rights to make, use and sell a [**] developed by Millennium, then the payments otherwise required under Subsection 3.8.1 for such Product shall as set forth below: EVENT AMOUNT [**] [**] [**] [**] [**] [**] [**] [**] [**] [**] [**] [**] [**] [**] [**] 2.9 Section 10 is hereby amended to insert the following new Section 10.3 and 10.4 after the text of existing Section 10.2: "10.3 Indemnification of Pfizer by Millennium Millennium shall indemnify, defend and hold harmless Pfizer and its directors, officers, employees, and agents and their respective successors, heirs and assigns (the "Pfizer Indemnitees"), against any liability, damage, loss or expense (including reasonable attorneys' fees and expenses of litigation) incurred by or imposed upon -8- 9 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. the Pfizer Indemnitees, or any one of them, in connection with any claims, suits, actions, demands or judgments, including without limitation personal injury and product liability matters (except in cases where such claims, suits, actions, demands or judgments result from the material breach, negligence or willful misconduct on the part of Pfizer), arising out of the production, manufacture, promotion, sale or use by any person of any Product or Antifungal Drug which is manufactured or sold by Millennium or by an Affiliate, sublicensee, distributor or agent of Millennium. 10.4 The indemnification set forth in Section 10.3 shall not apply if a Pfizer Indemnitee fails to give Millennium prompt notice of any claim it receives and such failure materially prejudices Millennium with respect to any claim or action to which Millennium's obligation pursuant to this Section applies. Millennium, in its sole discretion, shall choose legal counsel, shall control the defense of such claim or action, and shall have the right to settle same on such terms and conditions as it deems advisable." 3. Other Matters Except as expressly provided herein, all of the terms and provisions of the Agreements remain in full force and effect. In Witness Whereof, the parties have caused their respective authorized representatives to execute and deliver counterparts of this Amendment No. 1. Pfizer Inc By /s/ George M. Milne, Jr. ------------------------------- (Signature) George M. Milne, Jr., Vice President - ------------------------------------ Name and Title (Print) Millennium Pharmaceuticals, Inc. By /s/ Mark J. Levin ------------------------------- (Signature) Mark J. Levin, President and CEO - ------------------------------------ Name and Title (Print) -9-
EX-10.56 4 AMENDED & RESTATED RESEARCH AND LICENSE AGREEMENT 1 EXHIBIT 10.56 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. AMENDED AND RESTATED RESEARCH AND LICENSE AGREEMENT BY AND BETWEEN ASTRA AB AND MILLENNIUM PHARMACEUTICALS, INC. 2 TABLE OF CONTENTS ----------------- Page ---- Introduction ............................................................ 1 Article I - Definitions ................................................. 2 Section 1.1. "Affiliate" ......................................... 2 Section 1.2. "Airway Delivery" ................................... 2 Section 1.3. "Analog Protein Drug" ............................... 2 Section 1.4. "Antisense Drug" .................................... 2 Section 1.5. "Astra Development Program" ......................... 3 Section 1.6. "Astra Program Know-How" ............................ 3 Section 1.7. "Astra Program Patent Right(s)" ..................... 3 Section 1.8. "Astra Research Program" ............................ 3 Section 1.9. "Bioinformatics" .................................... 3 Section 1.10. "Candidate Drug" .................................... 3 Section 1.11. "Candidate Gene" .................................... 3 Section 1.12. "Confidential Information" .......................... 4 Section 1.13. "Contract Year" ..................................... 4 Section 1.14. "Diagnostic Product" ................................ 4 Section 1.15. "Field" ............................................. 4 Section 1.16. "First Commercial Sale" ............................. 4 Section 1.17. "FTE" ............................................... 5 Section 1.18. "Gene Therapy Drug" ................................. 5 Section 1.19. "Genetics Candidate Gene" ........................... 5 Section 1.20. "Genetics Validated Target" ......................... 5 Section 1.21. "Geographical Region" ............................... 6 Section 1.22. "Hit" ............................................... 6 Section 1.23. "Know-How" .......................................... 6 Section 1.24. "Lead" .............................................. 6 Section 1.25. "Major Market Country" .............................. 6 Section 1.26. "Marketing Exclusivity" ............................. 6 Section 1.27. "Millennium Core Technology" ........................ 6 Section 1.28. "Millennium Core Technology Know-How" ............... 6 Section 1.29. "Millennium Core Technology Patent Right(s)" ........ 7 Section 1.30. "Millennium Drug" ................................... 7 Section 1.31. "Millennium Field Know-How" ......................... 7 Section 1.32. "Millennium Field Patent Right(s)" .................. 7 Section 1.33. "Millennium Research Program" ....................... 7 Section 1.34. "Modified Drug" ..................................... 7 Section 1.35. "Net Sales" ......................................... 7 Section 1.36. "Novel Validated Target" ............................ 9 Section 1.37. "Other Products" .................................... 9 Section 1.38. "Party" ............................................. 9 (i) 3 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. Section 1.39. "Patent Right(s)" 9 Section 1.40. "Peptido Mimetic Drug" .............................. 10 Section 1.41. "Pre-Candidate Gene" ................................ 10 Section 1.42. "Product" ........................................... 10 Section 1.43. "Program Analog Protein Drug" ....................... 10 Section 1.44. "Program Antisense Drug" ............................ 10 Section 1.45. "Program Know-How" .................................. 10 Section 1.46. "Program Patent Rights" ............................. 11 Section 1.47. "Program Peptido Mimetic Drug" ...................... 11 Section 1.48. "Program Protein Drug" .............................. 11 Section 1.49. "Program Protein Mimic Drug" ........................ 11 Section 1.50. "Program Small Molecule Drug" ....................... 11 Section 1.51. "Protein" 11 Section 1.52. "Protein Drug" ...................................... 11 Section 1.53. "Protein Mimic Drug" ................................ 11 Section 1.54. "Public Domain" ..................................... 12 Section 1.55. [**] ................................................ 12 Section 1.56. "Related Antisense Drug" ............................ 12 Section 1.57. "Related Peptido Mimetic Drug" ...................... 12 Section 1.58. "Related Small Molecule Drug" ....................... 12 Section 1.59. "Research Program" .................................. 12 Section 1.60. [**] ............................................... 12 Section 1.61. "Small Molecule Drug" ............................... 13 Section 1.62. "Small Molecule Process Flow Schedule" .............. 13 Section 1.63. "Sublicensee" ....................................... 13 Section 1.64. "Territory" ......................................... 13 Section 1.65. "Validated Protein" ................................. 13 Section 1.66. "Validated Target" .................................. 13 Section 1.67. "Valid Claims" ...................................... 14 Article II - Research and Collaboration Program ......................... 14 Section 2.1. Exclusive Arrangement. ............................... 14 Section 2.2. Joint Management Team. ............................... 14 Section 2.3. Joint Management Team Responsibilities. .............. 15 Section 2.4. Goals and Objectives. ................................ 17 Section 2.5. Joint Management Team Decisions. ..................... 17 Section 2.6. Research Program Plan. ............................... 18 Section 2.7. Term of the Millennium Research Program. ............. 18 Section 2.8. Diligence. ........................................... 20 Section 2.9. Small Molecule High Throughput Screening ............. 21 (ii) 4 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. Article III - Disclosure of Know-How .................................... 21 Section 3.1. Millennium Know-How. ................................. 21 Section 3.2. Biological Materials. ................................ 22 Section 3.3. Astra Program Know-How. 22 Article IV - Confidentiality ............................................ 22 Section 4.1. Confidential Information and Know-How. ............... 22 Section 4.2. Employee Obligations. ................................ 23 Section 4.3. Publications. ........................................ 24 Section 4.4. Term. ................................................ 24 Article V - Grant of Rights ............................................. 25 Section 5.1. Licenses to Millennium Core Technology. .............. 25 Section 5.2. Licenses to Millennium Field Patent Rights and Millennium Field Know-How for Research Purposes ...... 25 Section 5.3. Product Licenses. .................................... 25 Section 5.4. Millennium's Retained Rights. ........................ 30 Section 5.5. Millennium Drugs. .................................... 30 Section 5.6. Rights to Potential Candidate Genes, Validated Targets and Validated Proteins. ...................... 31 Section 5.7. Astra's Rights to Diagnostic Products Not Being Commercialized by Millennium. ........................ 32 Article VI - Patent Ownership, Protection And Related Matters ........... 32 Section 6.1. Ownership. ........................................... 32 Section 6.2. Patentable Inventions. ............................... 32 Section 6.3. Review and Comment. .................................. 33 Section 6.4. Notice of Decision. .................................. 34 Section 6.5. Patent Term Extensions. .............................. 34 Section 6.6. Costs and Expenses. .................................. 34 Section 6.7. Third Party Infringement. ............................ 34 Section 6.8. Millennium Core Technology. .......................... 36 Section 6.9. Notice of Certification. ............................. 36 Section 6.10. Claimed Infringement; Claimed Invalidity. ............ 36 Article VII - Astra Due Diligence ....................................... 37 Section 7.1. Candidate Genes. ..................................... 37 Section 7.2. Validated Proteins. .................................. 37 Section 7.3. Validated Targets. ................................... 38 Section 7.4. Astra Minimum Efforts. ............................... 38 Section 7.5. Commercialization .................................... 38 Section 7.6. Niche Products ....................................... 39 (iii) 5 Article VIII - Payments ................................................. 40 Section 8.1. Initial License Fees. ................................ 40 Section 8.2. Additional Fees. ..................................... 41 Section 8.3. Research Funding. .................................... 43 Section 8.4. Milestones. .......................................... 45 Section 8.5. Royalty Payments to Millennium on Products. .......... 45 Section 8.6. Length of Royalty Payments. .......................... 45 Section 8.7. Royalties Payable Only Once. ......................... 46 Section 8.8. Other Products. ...................................... 46 Section 8.9. Payment Obligations to Third Parties. ................ 46 Section 8.10. Bankruptcy. .......................................... 46 Article IX - Accounting ................................................. 47 Section 9.1. Royalty Reports. ..................................... 47 Section 9.2. Delivery of Royalty. ................................. 47 Section 9.3. Records and Audits. .................................. 47 Section 9.4. Currency of Payments. ................................ 47 Section 9.5. Tax Withholding. ..................................... 48 Article X - Term and Termination ........................................ 48 Section 10.1. Term. ............................................... 48 Section 10.2. Material Non-Performance. ........................... 48 Section 10.3. Rights Upon Termination for Default. ................ 49 Section 10.4. Residual Rights. .................................... 50 Article XI - Product Liability Indemnification .......................... 51 Article XII - Good Faith Negotiation/Dispute Resolution ................. 52 Section 12.1. General. ............................................ 52 Section 12.2. Dispute Resolution Process. ......................... 52 Section 12.3. Arbitration Costs. .................................. 53 Article XIII - Governing Law ............................................ 53 Article XIV - Assignment ................................................ 53 Article XV - Amendments ................................................. 53 Article XVI - Notices ................................................... 54 Article XVII - Force Majeure ............................................ 55 (iv) 6 Article XVIII - Representations and Warranties .......................... 55 Section 18.1. Representation of Authority. ........................ 55 Section 18.2. Outstanding Agreements. ............................. 55 Section 18.3. Knowledge of Pending or Threatened Litigation. ...... 56 Section 18.4. Employee Obligations. ............................... 56 Section 18.5. Full Disclosure. .................................... 56 Article XIX - Public Announcements ...................................... 56 Article XX - Additional Agreements ...................................... 57 Section 20.1. Independent Contractors. ............................ 57 Section 20.2. Consents Not Unreasonably Withheld. ................. 57 Section 20.3. No Strict Construction. ............................. 57 Section 20.4. Headings. ........................................... 57 Section 20.5. Severance of Clauses. ............................... 57 Section 20.6. No Waiver. .......................................... 57 Section 20.7. Change in Control. .................................. 58 Appendix A -- Research Program Plan Appendix B -- Third Party Agreements with Millennium Appendix C -- Small Molecule Process Flow Schedule (v) 7 AMENDED AND RESTATED RESEARCH AND LICENSE AGREEMENT This Amended and Restated Agreement (the "Agreement") is entered into as of December 1998 and effective as of the 9th day of December, 1995 (the "Effective Date"), by and between Millennium Pharmaceuticals, Inc., a corporation organized and existing under the laws of the State of Delaware and having its principal office at 640 Memorial Drive, Cambridge, Massachusetts 02139-4815 (together with its Affiliates, "Millennium") and Astra AB, a corporation organized and existing under the laws of Sweden and having its principal place of business at S-151 85 Sodertalje, Sweden (together with its Affiliates, "Astra"). INTRODUCTION 1. Millennium is in the business of conducting research in the field of human genomics, an objective of which is to discover potential biological targets and assays for use in drug discovery. 2. Astra is in the business of discovering, developing and marketing pharmaceuticals. 3. Astra is interested in funding and collaborating with Millennium in discovering and developing targets and assays to identify and develop small molecule drugs primarily for the treatment of inflammatory respiratory diseases, and in obtaining, under specified circumstances, rights to other types of therapeutic molecules useful primarily in the treatment of inflammatory respiratory diseases that are identified through the use of technology developed before or during the collaboration. 4. Millennium is willing to provide know-how, materials and licenses to Astra to allow Astra to use certain of Millennium's technology in all fields and is also willing to provide know-how, materials and licenses to Astra to use certain of Millennium's technology in the field of inflammatory respiratory diseases. 5. Astra and Millennium entered into a Research and License Agreement (the "Original Agreement") on December 9, 1995 and desire to amend and restate the terms of the Original Agreement. NOW, THEREFORE, Millennium and Astra agree as follows: 1 8 ARTICLE I When used in this Agreement, each of the following terms shall have the meanings set forth in this Article I: SECTION 1.1. "AFFILIATE" means any corporation, company, partnership, joint venture and/or firm which controls, is controlled by or is under common control with a Party. For purposes of this Section 1.1, "control" shall mean, (a) in the case of corporate entities, direct or indirect ownership of at least fifty percent (50%) of the stock or shares having the right to vote for the election of directors, and (b) in the case of non-corporate entities, direct or indirect ownership of at least fifty percent (50%) of the equity interest with the power to direct the management and policies of such non-corporate entities. SECTION 1.2. "AIRWAY DELIVERY" means a method of administering a drug by oral inhalation or nasal administration. SECTION 1.3. "ANALOG PROTEIN DRUG" means a Protein or polypeptide which has been modified through a change in its primary structure resulting in a functionally significant change (such as a change in its pharmacokinetic or pharmacodynamic properties) to allow it to become a therapeutic product demonstrating relevant IN VITRO and IN VIVO activity. For purposes of this definition, a polypeptide constituting the pharmacologically active fragment of a Protein, that has not been modified through a change in its primary structure resulting in a functionally significant change, shall not be considered an Analog Protein Drug. SECTION 1.4. "ANTISENSE DRUG" means any drug or drug candidate which consists of nucleic acid or a functional analog, derivative or homologue thereof and which is complementary to a segment of DNA of a target gene or such target gene's cognate RNA and which, upon delivery by any means, alters the transcription, processing, elaboration, RNA expression, or protein production of or by such target gene, PROVIDED THAT Antisense Drug shall not include any nucleic acid or a functional analog, derivative or homologue thereof which, upon delivery by any means, must be expressed in order to alter the transcription, processing, elaboration, RNA expression, or protein production of or by a target gene. 2 9 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. SECTION 1.5. "ASTRA DEVELOPMENT PROGRAM" means development activities performed by Astra, commencing during or after the term of the Millennium Research Program and concluding on the [**] of the termination of the Millennium Research Program, to discover and develop Products in the Field based on the results arising from the Millennium Research Program and/or the Astra Research Program. SECTION 1.6. "ASTRA PROGRAM KNOW-HOW" means Know-How (a) which is necessary or useful in order to discover, develop, make, use, sell or seek approval to market therapeutic products for medical indications in the Field, and (b) which Astra develops, uses or acquires during the term of the Astra Research Program or the Astra Development Program, and (c) to which Astra has the right to grant licenses or sublicenses without violating the terms of any agreement or other arrangement with a third party. SECTION 1.7. "ASTRA PROGRAM PATENT RIGHT(S)" means a Patent Right (a) that relates to Astra Program Know-How, and (b) that is obtained by Astra during the term of the Astra Research Program or the Astra Development Program, and (c) to which Astra has the right to grant licenses or sublicenses without violating the terms of any agreement or other arrangement with a third party. SECTION 1.8. "ASTRA RESEARCH PROGRAM" means the research program, to be undertaken by Astra coincident and coterminous with the term of the Millennium Research Program, to discover Products in the Field (a) based on Millennium Field Know-How and Millennium Field Patent Rights, and/or (b) based on Millennium Core Technology Know-How as used in the Field and Millennium Core Technology Patent Rights as used in the Field. SECTION 1.9. "BIOINFORMATICS" means [**] and any other software tools developed or acquired by Millennium for the [**]. SECTION 1.10. "CANDIDATE DRUG" means a Lead that (a) has been sufficiently optimized, and (b) Astra has decided to enter into Astra Development Program pre-clinical studies. SECTION 1.11. "CANDIDATE GENE" means (a) a Genetics Candidate Gene or (b) a Pre-Candidate Gene, or a gene in its pathway, whose function has been [**] before or in the course of the Research Program, as evidenced by at least one IN VITRO model (including appropriate expression in relevant human cells or tissues) and at least one IN VIVO model of disease in which for each model i) the disregulation of the expression of the gene or Protein encoded by the gene, or ii) the modification of the 3 10 function of the Protein encoded by the gene, results in a statistically significant modified biological response, all as determined in good faith by the Joint Management Team. SECTION 1.12. "CONFIDENTIAL INFORMATION" means all materials, KnowHow or other information, including, without limitation, proprietary information and materials (whether or not patentable)regarding a Party's technology, products, business information or objectives, which is designated as confidential in writing by the disclosing Party, whether by letter or by the use of an appropriate stamp or legend, prior to or at the time any such material, trade secret or other information is disclosed by the disclosing Party to the other Party. Notwithstanding the foregoing to the contrary, materials, KnowHow or other information which is orally, electronically or visually disclosed by a Party, or is disclosed in writing without an appropriate letter, stamp or legend, shall constitute Confidential Information if the disclosing Party, within thirty (30)days after such disclosure, delivers to the other Party a written document or documents describing the materials, KnowHow or other information and referencing the place and date of such oral, visual, electronic or written disclosure and the names of the persons to whom such disclosure was made, PROVIDED, HOWEVER, that any technical information disclosed at a meeting of the Joint Management Team shall constitute Confidential Information unless otherwise specified. SECTION 1.13. "CONTRACT YEAR" means the twelve- (12-) month period beginning on January 1, 1996, and each succeeding twelve- (12-) month period thereafter. SECTION 1.14. "DIAGNOSTIC PRODUCT" means any diagnostic product in the form of a device, compound, kit or service. SECTION 1.15. "FIELD" means inflammatory respiratory disease, including without limitation, asthma, rhinitis, chronic obstructive lung disease and chronic bronchitis, but not including pneumonia, bronchiectasis and bronchiolithiasis, primary pulmonary hypertension, pulmonary thromboembolism, cystic fibrosis and neoplasms of the lung. SECTION 1.16. "FIRST COMMERCIAL SALE" means, for each Product, (a) with respect to a Major Market Country, the first commercial sale in such Major Market Country as part of a nationwide introduction by Astra, and/or its Sublicensees other than for clinical trial purposes or compassionate use, or (b) with respect to any country in the Territory other than a Major Market Country, the first commercial sale in any Major Market Country located in the Geographical Region in which such country is located 4 11 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. as part of a nationwide introduction by Astra and/or its Sublicensees other than for clinical trial purposes or compassionate use. SECTION 1.17. "FTE" means a full time equivalent scientific person year (consisting of a total of one thousand eight hundred eighty (1,880)hours per year of scientific work on or directly related to the Millennium Research Program), carried out by a Millennium employee, having at least a Bachelor's Degree Scientific work on or directly related to the Millennium Research Program to be performed by Millennium employees can include, but is not limited to, experimental laboratory work, recording and writing of results, reviewing literature and references, holding scientific discussions, managing and leading scientific staff, development and application of Bioinformatics tools related to the Millennium Research Program, and carrying out project management duties. 1.18 Section . "Gene Therapy Drug" means any drug or drug candidate which consists of nucleic acid or a functional analog, derivative or homologue thereof and which, upon delivery by any means, provides a gene product encoded therein which is expressed. SECTION 1.19. "GENETICS CANDIDATE GENE" means an isolated gene which has been [**] in the course of the Research Program by either Party. A [**] must be [**](a) [**]; or (b) [**] (in which instance the Genetics Candidate Gene shall mean the [**]. SECTION 1.20. "GENETICS VALIDATED TARGET" means a biological molecule that (a) is a Genetics Candidate Gene, a Protein encoded by a Genetics Candidate Gene or another qualifying biological molecule in a relevant biochemical pathway, the identification of which or the linkage with a disease is based upon the identification of a Genetics Candidate Gene, and (b) that (i) has been configured into a research assay that is suitable for the identification of small molecule agonists or antagonists of such biological molecule and which research assay is (1) a biochemical assay (including without limitation, a competitive binding assay for a receptor or an enzyme substrate conversion assay), or (2) a reporter based assay, in either case having a robust assay readout (such as fluorescence, chemiluminescence, and/or radioactivity that has the potential to be configured into a high throughput screen and is therefore suitable for undertaking research activities to develop a high throughput screen, or (ii) is suitable for use in rational drug design efforts or (iii) is suitable for use in Antisense Drug development efforts, all as determined in good faith by the Joint Management Team. 5 12 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. SECTION 1.21. "GEOGRAPHICAL REGION" means a geographical region that consists of (a) North America, Central America and South America, (b) Africa and Europe, including Turkey and all areas previously a part of the former Soviet Union as of January 1, 1990, or (c) all countries of the world not included in either clause (a) or (b). SECTION 1.22. "HIT" means a synthetic or naturally derived small molecule therapeutic product (weighing equal to or less than 5,000 daltons) that is identified based on its activity in (a) an initial small molecule screen against a Validated Target, or (b) through rational drug design directed at a Validated Target, and (c) in either case, has had its activity confirmed in a secondary assay. SECTION 1.23. "KNOW-HOW" means any information, data and materials, including organic compounds and biological materials such as cell lines, RNA, DNA, DNA fragments, organisms, Proteins, polypeptides, plasmids and vectors and software, user's manuals and guides. SECTION 1.24. "LEAD" means a Hit that has been analyzed by exploratory chemistry and which has been determined by Astra to have a structure activity relationship that is of sufficient interest to warrant an expanded commitment to resources for medicinal chemistry. SECTION 1.25. "MAJOR MARKET COUNTRY" means the United States, Canada, the United Kingdom, Sweden, Germany, France, Italy, Spain, Japan, China or Australia. SECTION 1.26. "MARKETING EXCLUSIVITY" means the marketing exclusivity afforded approved drug products pursuant to the exclusivity provisions of the United States "Drug Price Competition and Patent Term Restoration Act of 1984," or its equivalent in a country other than the United States. SECTION 1.27. "MILLENNIUM CORE TECHNOLOGY" means [**]. SECTION 1.28. "MILLENNIUM CORE TECHNOLOGY KNOW-HOW" means Know-How that relates to Millennium Core Technology, that either (a) is in Millennium's possession on the Effective Date or (b) is developed by Millennium during the term of the Millennium Research Program, or (c) is acquired by Millennium during the term of the Millennium Research Program, with the right to grant licenses or sublicenses without violating the terms of any agreement or other arrangement with a third party. 6 13 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. SECTION 1.29. "MILLENNIUM CORE TECHNOLOGY PATENT RIGHT(S)" means a Patent Right that relates to Millennium Core Technology. SECTION 1.30. "MILLENNIUM DRUG" means any Small Molecule Drug or Peptido Mimetic Drug, that is discovered, identified or developed as a result of a screening effort undertaken pursuant to Section 5.5. Millennium Drug shall not include any Modified Drug, Program Small Molecule Drug, Related Small Molecule Drug, Program Peptido Mimetic Drug or Related Peptido Mimetic Drug. SECTION 1.31. "MILLENNIUM FIELD KNOW-HOW" means Know-How owned or controlled by Millennium which is necessary or useful in order to discover, develop, make, use, sell or seek approval to market therapeutic products for medical indications in the Field, and which (a) is in Millennium's possession on the Effective Date, or (b) Millennium develops in the course of the Millennium Research Program, or (c) Millennium acquires in the course of the Millennium Research Program and to which Millennium has the right to grant licenses or sublicenses without violating the terms of any agreement or other arrangement with a third party, provided, however, that Millennium Field Know-How shall not include (i) Millennium Core Technology Know-How and other generalized methods for conducting genomic research and characterizing the function of genes, and (ii) information and biological samples relating to human materials acquired or otherwise accessed by Millennium and used in genetic analysis in the Millennium Research Program. SECTION 1.32. "MILLENNIUM FIELD PATENT RIGHT(S)" means a Patent Right that relates to Millennium Field Know-How (including a Patent Right owned jointly by the Parties and relating to the Field). SECTION 1.33. "MILLENNIUM RESEARCH PROGRAM" means the research program, the term of which extends during the time that research is funded by Astra pursuant to Section 8.3 of this Agreement, and which is to be undertaken by Millennium using genetics or genomic technology to discover and characterize Pre-Candidate Genes, Candidate Genes, Validated Targets and Validated Proteins with potential utility for the identification and development of Products in the Field, that is described in greater detail in APPENDIX A. SECTION 1.34. "MODIFIED DRUG" means a compound which (a) other than through the use of [**], was known to [**] to have [**] to its development as a therapeutic product in the Field, and (b) was [**] or [**] through the use of [**] to improve its therapeutic properties (but not merely to characterize the compound) for use in the Field. Modified Drug shall not include any Program Small Molecule Drug, 7 14 Related Small Molecule Drug, Program Peptido Mimetic Drug, Related Peptido Mimetic Drug, Program Antisense Drug, Related Antisense Drug, Program Protein Drug, Program Analog Protein Drug, Program Protein Mimic Drug or Gene Therapy Drug. SECTION 1.35. "NET SALES" means with respect to a Product, the gross amount invoiced by Astra and/or its Sublicensees, on sales or other dispositions of the Product to unrelated third parties, less the following items, provided that such items are included in the price charged and do not exceed reasonable and customary amounts in the country in which such sale occurred: (a) Trade, cash and quantity discounts actually allowed and taken; (b) Excises, sales taxes or other taxes imposed upon and paid with respect to such sales (excluding national, state or local taxes based on income); (c) Freight, insurance and other transportation charges incurred in shipping the Product to third parties; (d) Amounts repaid or credited by reason of rejections, defects, recalls or returns or because of retroactive price reductions; (e) Rebates paid pursuant to government regulations; and (f) With respect to Net Sales in Japan, back margin actually allowed and taken in customary and reasonable amounts. Such amounts shall be determined from the books and records of Astra, and/or its Sublicensees, maintained in accordance with generally accepted accounting principles, consistently applied. If a Product is sold, leased, used or otherwise commercially disposed of for value (including, without limitation, disposition in connection with the delivery of other products or services) in a transaction that is not an outright arm's length sale to an independent third party, then the gross amount invoiced in such transaction shall be deemed to be the gross amount that would have been paid had there been such a sale at the average sale price of such Product during the applicable royalty reporting period. Net Sales shall not include any consideration received by Astra or its Sublicensees in respect of the sale, use or other disposition of a Product in a country prior to the receipt of all regulatory approvals required to commence full commercial sales of such Product in such country, including the sale, use or other disposition of such Product in the course of any clinical trial conducted in the course of the Astra Development Program, sales under "treatment INDs," "named patient sales," "compassionate use sales," or their equivalents. 8 15 In the event the Product is sold as part of a Combination Product (as defined below), the Net Sales from the Combination Product, for the purposes of determining royalty payments, shall be determined by multiplying the Net Sales of the Combination Product (as defined in the standard Net Sales definition), during the applicable royalty reporting period, by the fraction, A/A+B where A is the average sale price of the Product when sold separately in finished form and B is the average sale price of the other product(s) included in the Combination Product when sold separately in finished form, in each case during the applicable royalty reporting period or, if sales of both the Product and the other product(s) did not occur in such period, then in the most recent royalty reporting period in which sales of both occurred. In the event that such average sale price cannot be determined for both the Product and all other product(s) included in the Combination Product, Net Sales for the purposes of determining royalty payments shall be calculated by multiplying the Net Sales of the Combination Product by the fraction C/C+D where C is the fair market value of the Product and D is the fair market value of all other pharmaceutical product(s) included in the Combination Product. As used above, the term "Combination Product" means any pharmaceutical product which comprises the Product and other active compounds and/or ingredients. SECTION 1.36. "NOVEL VALIDATED TARGET" means a Validated Target (other than a Genetics Validated Target) that, at the time of discovery or subsequently during its validation, is: (a) determined to encode a novel Protein based on (i) greater than fifty percent (50%) of the nucleic acid sequence of the full length coding sequence not being present in the Public Domain or (ii) assignment of the Protein to a class of Proteins when such classification was previously unknown; or (b) novelly annotated wherein such novel annotation relates to the role of such Validated Target in (i) respiratory disease or (ii) inflammation. In order to qualify as a Novel Validated Target such Validated Target shall be reasonably believed to lead to a valid and enforceable patent in the United States as determined in good faith by Joint Management Team. SECTION 1.37. "OTHER PRODUCTS" means any pharmaceutical product which does not comprise a Modified Drug, Program Small Molecule Drug, Related Small Molecule Drug, Program Peptido Mimetic Drug, Related Peptido Mimetic Drug, Program Antisense Drug, Related Antisense Drug, Program Protein Drug, Program Analog Protein Drug or Program Protein Mimic Drug. SECTION 1.38. "PARTY" means Astra or Millennium; "PARTIES" means Astra and Millennium. SECTION 1.39. "PATENT RIGHT(S)" means a patent or patent application and all divisions, continuations, continuations-in-part, reissues, reexaminations, extensions and foreign counterparts thereof that is owned or controlled by Millennium and/or 9 16 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. by Astra, or a license to the same to which either Millennium or Astra has the right to grant a sublicense. SECTION 1.40. "PEPTIDO MIMETIC DRUG" means a synthetic organic molecule (weighing equal to or less than 5,000 daltons) which is designed or developed using medicinal chemistry, SAR or combinatorial chemistry techniques to interact with a Validated Target and which incorporates key properties of a peptide and which is a therapeutic product. SECTION 1.41. "PRE-CANDIDATE GENE" means an [**] which has been [**] by any method other than [**] and that (a) is [**], or (b) [**] to (i) a gene that encodes a Protein of demonstrated utility as a therapeutic or (ii) a class of genes that encode Proteins that have been demonstrated to be generally suitable as a target for the identification of small molecule functional agonists or antagonists, and (iii) in each of (i) and (ii) whose pattern of RNA expression (or a Protein encoded by such gene whose pattern of expression) is of appropriate distribution in tissues and cell types (human or animal) implicated in the Field. SECTION 1.42. "PRODUCT" means any product that comprises (a) a Program Small Molecule Drug, (b) a Related Small Molecule Drug, (c) a Program Peptido Mimetic Drug, (d) a Related Peptido Mimetic Drug (e) a Program Antisense Drug, (f) a Related Antisense Drug, (g) a Program Protein Drug, (h) a Program Analog Protein Drug, (i) a Program Protein Mimic Drug, or (j) a Modified Drug, provided, however, that Product shall not include any (1) Millennium Drug, (2) Gene Therapy Drug, (3) Diagnostic Product or (4) Other Product. SECTION 1.43. "PROGRAM ANALOG PROTEIN DRUG" means an Analog Protein Drug which, in the course of the Research Program or the Astra Development Program, is discovered or the development of which is undertaken or the relevant biological activity of which is identified, and which is based on a Validated Protein or a Program Protein Drug. SECTION 1.44. "PROGRAM ANTISENSE DRUG" means an Antisense Drug which, in the course of the Research Program or the Astra Development Program, is discovered or the development of which is undertaken or the relevant biological activity of which is identified. SECTION 1.45. "PROGRAM KNOW-HOW" means Millennium Field Know-How and Astra Program Know-How, collectively, whether or not developed or acquired solely 10 17 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. or jointly by Millennium and/or Astra. Program Know-How includes but is not limited to Candidate Genes, Validated Targets and Validated Proteins. SECTION 1.46. "PROGRAM PATENT RIGHTS" means Millennium Field Patent Rights and Astra Program Patent Rights, collectively, whether or not developed or acquired solely or jointly by Millennium and/or Astra. SECTION 1.47. "PROGRAM PEPTIDO MIMETIC DRUG" means a Peptido Mimetic Drug which, in the course of the Research Program or the Astra Development Program, is discovered or the development of which is undertaken or the relevant biological activity of which is identified. SECTION 1.48. "PROGRAM PROTEIN DRUG" means a Protein Drug which, in the course of the Research Program or the Astra Development Program, is discovered, or the development of which is undertaken or the relevant biological activity of which is identified. SECTION 1.49. "PROGRAM PROTEIN MIMIC DRUG" means a Protein Mimic Drug which, in the course of the Research Program or the Astra Development Program, is discovered or the development of which is undertaken or the relevant biological activity of which is identified, and which mimics a Validated Protein or a Program Protein Drug. SECTION 1.50. "PROGRAM SMALL MOLECULE DRUG" means a Small Molecule Drug which, in the course of the Research Program or the Astra Development Program, is discovered or the development of which is undertaken or the relevant biological activity of which is identified. SECTION 1.51. "PROTEIN" means any of a class of high molecular weight (i.e., weighing greater than [**]) polymer compounds composed of a variety of amino acids joined by peptide linkages, including aggregates, hybrids and fragments thereof, as well as naturally post-translationally modified variants thereof (i.e., glycosylated proteins) and chemically modified versions thereof (e.g., pegylated or liposomally encapsulated proteins). SECTION 1.52. "PROTEIN DRUG" means a Protein that is, or is being developed for use as, a therapeutic product. SECTION 1.53. "PROTEIN MIMIC DRUG" means a synthetic organic molecule which is a mimic of, or is designed or developed using medicinal chemistry, SAR or 11 18 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. combinatorial chemistry techniques to incorporate key properties of, a Protein and which is a therapeutic product. SECTION 1.54. "PUBLIC DOMAIN" means available to the general public in any manner, including without limitation (a) in a published scientific paper, (b) in an issued patent or a published patent application, or (c) in an electronically published database (e.g. GenBank, DBEST, etc.). SECTION 1.55. [**] means methods developed or acquired by Millennium for the automated or semi-automated use of [**] that are [**]. SECTION 1.56. "RELATED ANTISENSE DRUG" means an Antisense Drug which, in the course of the Research Program or the Astra Development Program, is discovered or the development of which is undertaken or the relevant biological activity of which is identified, and which (a) reacts with the same Validated Target as, and (b) is covered by the same patent(s) or patent application(s) as, and (c) is a member of the same chemical genus as, a corresponding Program Antisense Drug. SECTION 1.57. "RELATED PEPTIDO MIMETIC DRUG" means a Peptido Mimetic Drug which, in the course of the Research Program or the Astra Development Program, is discovered or the development of which is undertaken or the relevant biological activity of which is identified, and which (a) reacts with the same Validated Target as, and (b) is covered by the same patent(s) or patent application(s) as, and (c) is a member of the same chemical genus as, a corresponding Program Peptido Mimetic Drug. SECTION 1.58. "RELATED SMALL MOLECULE DRUG" means a Small Molecule Drug which, in the course of the Research Program or the Astra Development Program, is discovered or the development of which is undertaken or the relevant biological activity of which is identified, and which (a) reacts with the same Validated Target as, and (b) is covered by the same patent(s) or patent application(s) as, and (c) is a member of the same chemical genus as, a corresponding Program Small Molecule Drug. SECTION 1.59. "RESEARCH PROGRAM" means, collectively, the Millennium Research Program and the Astra Research Program. SECTION 1.60. [**] means integrated software tools for the [**] to identify and provide [**], provided that [**] shall not include (a) metatools (i.e., software tools 12 19 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. used to develop the [**] themselves), (b) source code, or (c) tools developed by Millennium to [**] structure and [**] from primary [**]. SECTION 1.61. "SMALL MOLECULE DRUG" means a small molecule therapeutic product (weighing equal to or less than [**]), other than a Modified Drug, a Peptido Mimetic Drug, an Antisense Drug, a Protein Drug, an Analog Protein Drug, a Protein Mimic Drug or a Gene Therapy Drug. SECTION 1.62. "SMALL MOLECULE PROCESS FLOW SCHEDULE" means the stages of the discovery process for Pre-Candidate Genes, Candidate Genes, Validated Targets, Hits, Leads and Candidate Drugs that are identified in the course of the Millennium Research Program, the Astra Research Program or the Astra Development Program. The Small Molecule Process Flow Schedule is attached hereto as Appendix C and is hereby incorporated into the Research Program Plan. SECTION 1.63. "SUBLICENSEE" means any third party other than an Affiliate granted the right, subject to the terms and conditions of Article V, to make, use and sell a Product, but not including a third party that is not granted the right to make such Product but merely purchases such Product in finished form (ready pack or in bulk) for resale. SECTION 1.64. "TERRITORY" means all countries of the world. SECTION 1.65. "VALIDATED PROTEIN" means a Protein encoded by a [**] or other Protein, the identification of which other Protein was based upon the identification of a [**], that is suitable for [**] into a [**], as determined in good faith by the Joint Management Team. SECTION 1.66. "VALIDATED TARGET" means a biological molecule that (a) is a [**], a Protein [**] by a [**] or another qualifying biological molecule in a relevant [**] of which or the [**] is based upon the identification of a [**], and (b) that (i) has been configured into a research assay that is suitable for the [**] and which research assay is (1) a biochemical assay (including without limitation, a competitive binding assay for a receptor or an enzyme substrate conversion assay), or (2) a reporter based assay, in either case having a robust assay readout (such as fluorescence, chemiluminescence, and/or radioactivity) that has the potential to be configured into a high throughput screen and is therefore suitable for undertaking research activities to develop a high throughput screen, or (ii) is suitable for use in [**] or (iii) is suitable for use in [**] development efforts, all as determined in good 13 20 faith by the Joint Management Team. Unless stated otherwise, a Validated Target shall include a Genetics Validated Target. SECTION 1.67. "VALID CLAIMS" means any claim(s) pending in a patent application or in an unexpired patent which has not been held unenforceable, unpatentable or invalid by a decision of a court or other governmental agency of competent jurisdiction, unappealable or unappealed within the time allowed for appeal, and which has not been admitted to be invalid or unenforceable through reissue or disclaimer. ARTICLE II RESEARCH AND COLLABORATION PROGRAM SECTION 2.1. EXCLUSIVE ARRANGEMENT. During the term of the Millennium Research Program, Millennium agrees that it shall not participate, either directly or in collaboration with others in any similar program of genetics and genomics research relating to the Field except pursuant to the terms of this Agreement, provided that the foregoing shall not apply to activities in the Field by Millennium relating to the research, development and commercialization of (i) Antisense Drugs (subject to the provisions of Section 5.3), (ii) Protein Drugs, Analog Protein Drugs and Protein Mimic Drugs (subject to the provisions of Section 5.3), (iii) Gene Therapy Drugs and (iv) Diagnostic Products. SECTION 2.2. JOINT MANAGEMENT TEAM. The Parties have established a Joint Management Team, consisting of four (4) representatives designated by Astra and four (4) representatives designated by Millennium. Each Party shall cause its representatives to attend the meetings of the Joint Management Team. If a representative of a Party is unable to attend a meeting, such Party may designate an alternate to attend such meeting in place of the missing representative. In addition, each Party may at its discretion invite non-voting employees, consultants or scientific advisors to attend the meetings of the Joint Management Team. The Joint Management Team shall meet no less frequently than once each calendar quarter, and shall meet at such other times as deemed appropriate by the Joint Management Team. Each Party may change any one or more of its representatives to the Joint Management Team at any time upon notice to the other Party. The location of the Joint Management Team meetings shall alternate between Massachusetts and Sweden, or as otherwise mutually agreed. Each Party shall appoint, and reappoint from time to time as necessary, a project leader to undertake day to day contact with the other Party. 14 21 The Joint Management Team will function during the term of the Research Program and thereafter for as long as both Parties agree. Upon termination of the Research Program, the Parties in good faith shall agree upon an alternative method of communication with regard to the Astra Development Program and the commercialization of Products. SECTION 2.3. JOINT MANAGEMENT TEAM RESPONSIBILITIES. (a) The Joint Management Team shall be responsible for coordinating and reviewing the activities of the Parties under this Agreement, including without limitation the Research Program. Without intending to limit the generality of the foregoing, the Joint Management Team shall oversee the disclosure and transfer of relevant Know-How to facilitate the research and development of Pre-Candidate Genes, Candidate Genes, Validated Targets, Validated Proteins, Hits, Leads, Candidate Drugs and Products, as well as the disclosure and transfer of Millennium Field Know-How and Millennium Core Technology Know-How to Astra pursuant to Article III, and the disclosure of Astra Program Know-How to Millennium pursuant to Article III. (b) Subject to the minimum funding levels established in Section 8.3, the Joint Management Team shall determine the level and extent of research work to be conducted by Millennium and funded by Astra under this Agreement. (c) As soon as practicable after execution of this Agreement, the Joint Management Team shall appoint one (1) representative from each Party to be responsible for the preparation of a package of information that provides all relevant information concerning each gene being pursued under the Research Program. The designated representatives shall prepare and deliver a copy of the package of information to each member of the Joint Management Team at least fifteen (15) days prior to each Joint Management Team Meeting. (d) As soon as practicable after the execution of this Agreement, the Joint Management Team shall agree on the criteria for each stage of the Small Molecule Process Flow Schedule. The Joint Management Team shall also review each research project being pursued under the Research Program and shall assign each gene within each research project to a specific stage of the Small Molecule Process Flow Schedule and designate such gene under the appropriate definition for such stage. (e) The Joint Management Team shall be responsible for the review of the results of the Research Program and shall advance genes being pursued under the Research Program according to the Small Molecule Process Flow Schedule. At each meeting of the Joint Management Team, the representatives 15 22 shall discuss all information, provided in accordance with subsection (c) above, regarding genes being pursued under the Research Program and shall decide whether or not each gene shall be advanced to the next stage of the Small Molecule Process Flow Schedule. The Joint Management Team may advance a gene to the next stage of the Small Molecule Process Flow Schedule even if such gene does not meet all requirements of such next stage. (i) Should the Joint Management Team decide that insufficient information is available to make a decision to advance a gene to the next stage of the Small Molecule Process Flow Schedule based on the requirements in the Research Program Plan (as defined in Section 2.6), then during the Joint Management Team meeting, the Joint Management Team shall determine what additional information is required based upon the criteria set forth in the Research Program Plan and such gene shall remain at its current stage of discovery until sufficient information is available for a decision to be made, PROVIDED, HOWEVER, that should the Joint Management Team disagree as to what additional information is required or as to whether or not sufficient information is available to make a decision with respect to a particular gene, then such issue shall be resolved as set forth in Section 2.5. (ii) Should the Joint Management Team agree that sufficient information is available to make a decision to advance a gene or other element of the Small Molecule Process Flow Schedule to the next stage of the Small Molecule Process Flow Schedule, but the Parties disagree as to whether or not a particular gene or other element of the Small Molecule Process Flow Schedule should be advanced to the next stage of the Small Molecule Process Flow Schedule, then such issue shall be resolved as set forth in Section 2.5, PROVIDED, however, if Astra determines that such gene or other element of the Small Molecule Process Flow Schedule should not be advanced and if Astra is using commercially reasonable efforts to identify and develop at least one Product and the sale of such Product developed by Astra will yield royalties payable to Millennium by Astra under Section 8.5, then such gene or other element of the Small Molecule Process Flow Schedule shall not be advanced at that time. Notwithstanding the foregoing, should the Joint Management Team disagree as to whether a Candidate Gene should be advanced to a Validated Target or a Validated Protein, then such issue shall not be resolved as set forth in Section 2.5. Rather the issue shall be resolved through the use of an expedited arbitration process, in which the Parties first try to agree on a mutually accepted scientist to serve as the arbitrator (failing mutual agreement on a single scientist, each Party appoints a scientist not affiliated with such Party and the two scientists so selected pick a third unaffiliated scientist and 16 23 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. all three shall serve as arbitrators). The arbitrator(s) shall review the disputed matter on an expedited basis (not to exceed forty-five (45) days), considering the relevant data, standards established by this Agreement and the Research Program and relevant precedents. The decision of the arbitrator(s) shall be binding on the Parties. (iii) Should the Joint Management Team decide that a Pre-Candidate Gene or Candidate Gene shall not be advanced to the next stage of the Small Molecule Process Flow Schedule, then all research with respect to any such gene shall be suspended. If and when the Joint Management Team decides to advance any such gene to the next stage of the Small Molecule Process Flow Schedule then active research on such gene shall resume. SECTION 2.4. GOALS AND OBJECTIVES. As soon as practical after the execution of this Agreement, the Joint Management Team shall agree on the goals and objectives and research and development activities of the Research Program, including the specific research projects to be pursued under the Research Program. At each meeting of the Joint Management Team, the progress of the Research Program will be reviewed and if necessary the goals and/or resource allocation for the Millennium Research Program will be modified. No later than the end of the first month of each Contract Year during the Millennium Research Program, the Joint Management Team shall meet to discuss in detail the progress of the Research Program and agree upon the short- and long-term goals and prospective budget for the Millennium Research Program. In the event a significant development occurs which may affect the short-or long-term goals or resource allocations of the Research Program or methods of achieving said goals, the Joint Management Team shall reconvene, reassess and change such methods, resource allocations and/or goals of the Millennium Research Program. SECTION 2.5. JOINT MANAGEMENT TEAM DECISIONS. The unanimous agreement of the members of the Joint Management Team shall be required to take any action, except as provided below in this Section 2.5. Any member of the Joint Management Team who is not present at any meeting either in person or by a designated alternate may appoint another representative or alternate as his proxy to act on his behalf on all matters coming to a vote. The Joint Management Team may conduct meetings by telephone or video conference. If the Joint Management Team is unable to agree with respect to the scope and direction of the Research Program,[**], subject to Astra's obligation to pay the minimum research funding in accordance with Section 8.3, provided, however, that in the event that the Joint Management Team is unable to 17 24 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. agree with respect to any significant reallocation of Millennium resources or personnel between or among the projects of the Millennium Research Program, [**]. (For purposes of this Section 2.5, a reallocation of Millennium resources and personnel shall be deemed to be significant if more than twenty-five percent (25%) of the resources and personnel are to be reallocated within any given calendar year.) If the Joint Management Team is unable to reach a unanimous agreement on any issue which shall not be decided by Astra or Millennium or as set forth in Section 2.3(d)(ii), as the case may be, such issue shall be referred to the Vice President of Pre-Clinical Affairs of Astra AB and the Chief Executive Officer of Millennium for resolution. If the Vice President of Pre-Clinical Affairs of Astra AB and the Chief Executive Officer of Millennium are unable to reach agreement on any issue regarding the Research Program which shall not be decided by Astra, then such issues shall be submitted to arbitration pursuant to the provisions set forth in Article XII and the arbitrators shall have the authority to (i) direct the Parties as to the manner in which the Parties shall resolve the issue, or (ii) render a final decision with respect to such issue. The arbitrators shall have no authority to amend this Agreement or the Research Program Plan (as defined in Section 2.6) and the budget contained therein. SECTION 2.6. RESEARCH PROGRAM PLAN. The Parties shall engage in the Research Program to expedite the discovery and development of Pre-Candidate Genes, Candidate Genes, Validated Targets, Validated Proteins, Hits, Leads, Candidate Drugs and Products in substantial accordance with the research schedule and goals set forth in the Research Program plan (the "Research Program Plan"), attached to this Agreement as APPENDIX A (which Research Program Plan is subject to review and modification by the Joint Management Team and final resolution by Astra or Millennium, if required, pursuant to Section 2.5). SECTION 2.7. TERM OF THE MILLENNIUM RESEARCH PROGRAM. (a) Millennium shall conduct the Millennium Research Program for the first five (5) Contract Years; provided, however, that Astra may terminate the Millennium Research Program by providing notice to Millennium (the "Termination Notice") at any time during the two (2) month period following the conclusion of the third Contract Year (i.e. during January and February, 1999), if, at the conclusion of the third Contract Year, the Year 3 Success Benchmark (as defined below) has not been achieved. As used herein, the term "Year 3 Success Benchmark" means that [**] in each case as determined in good faith by the Joint Management Team. The Parties hereby agree that the Year 3 Success Benchmark has been achieved. 18 25 (b) As Millennium has achieved the Year 3 Success Benchmark, Astra shall choose either (i) to let the Millennium Research Program continue for the remainder of its five (5) year term, or (ii) to extend the Millennium Research Program for an additional two (2) Contract Years beyond the original five (5) year term to a term of seven (7) Contract Years. Astra elects to extend the Millennium Research Program for an additional two (2) Contract Years, for a total term of seven (7) Contract Years (i.e. up to and including December 31, 2002), with Astra having the option to terminate the Millennium Research Program after the fifth Contract Year as set forth in Section 2.7(c). Astra shall pay to Millennium the additional fee subject to and as set forth in Sections 8.2(a) and 8.2(b). Astra shall fund the fourth through seventh Contract Years at the levels set forth in Section 8.3(a) (iii) subject to Section 2.7(c). (c) Astra shall have the option to terminate the Millennium Research Program after the fifth Contract Year as follows. Three (3) months prior to the conclusion of the fifth Contract Year, Astra shall notify Millennium in writing of its decision (the "Astra Decision") to either (i) terminate the Millennium Research Program at the end of the fifth Contract Year and pay to Millennium the additional fee set forth in Section 8.2(c), or (ii) continue the Millennium Research Program for a total of seven (7) Contract Years and no additional fee shall be due to Millennium. Should the Astra Decision be to continue the Millennium Research Program for a total of seven (7) Contract Years, and the Parties have achieved the Year 5 Success Benchmark (as defined below), then the Millennium Research Program shall continue for a total of seven (7) Contract Years. Should the Astra Decision be to continue the Millennium Research Program for a total of seven (7) Contract Years, and the Parties have not achieved the Year 5 Success Benchmark (as defined below), then Millennium shall have the right, exercisable within thirty (30) days after receipt of the Astra Decision, to elect to discontinue the Millennium Research Program at the conclusion of the fifth Contract Year, subject to Astra's option set forth in Section 2.7(d) below. As used herein, the term "Year 5 Success Benchmark" means that (A) at least five (5) Validated Targets have been identified and entered into small molecule high throughput screening, and (B) Astra is diligently pursuing Hits identified by small molecule high throughout screening as determined in good faith by the Parties. Upon the recommendation of the Joint Management Team, based upon the allocation of resources to and prioritization of work within the Millennium Research Program, Millennium and Astra may agree to other objectives, as alternatives to the objectives stated in (A) and (B) of the preceding sentence, to be included in the Year 5 Success Benchmark. (d) If Millennium elects to discontinue the Millennium Research Program under the provisions of Section 2.7(c), then at Astra's option, the 19 26 Millennium Research Program shall continue for a period of two (2) Contract Years with the following modifications: (1) Millennium shall be obligated to continue only the existing genetics research program under the Millennium Research Program which is directed at the identification of Genetics Candidate Genes and Genetics Validated Targets and shall not be obligated to undertake any new program of genetics research; (2) the provisions of Section 8.3(a)(iii) and 8.3(a)(iv) shall be deemed amended such that the Millennium Research Program shall be funded by Astra at an FTE level which is the average number of FTEs during the fourth and fifth Contract Years who conducted the research directed at the identification of Genetics Candidate Genes and Genetics Validated Targets; (3) Astra shall fund such FTEs at the FTE Rate set forth in Section 8.3(a)(i); (4) any change in the number of FTEs engaged in such research may be made only by consensus agreement of the Joint Management Team; (5) Section 8.3(a)(vi) shall be amended to read in its entirety as follows, "Astra shall reimburse Millennium for all third party collaborative research expenses incurred by Millennium in support of the Millennium Research Program such expenses subject to the prior approval of the Joint Management Team"; (6) the Millennium Research Program and the Research Program shall be deemed terminated at the end of the fifth Contract Year for all purposes under Section 1.11(b), Section 1.28, Section 1.41, and Section 2.1; (7) the Millennium Research Program and the Research Program shall be deemed to be continued for the purposes of Section 1.5, Section 2.9 and Section 4.4; and (8) for the purposes of the sixth and seventh Contract Years all other Sections shall be amended such that the Millennium Research Program shall be limited to consist of the research directed at the identification of Genetics Candidate Genes and Genetics Validated Targets; such Sections include without limitation Section 1.6, Section 1.7, Section 1.8, Section 1.17, Section 1.31, Section 1.33, Section 2.8, Section 3.1, Section 3.2, Section 3.3, Section 5.6, Section 7.1, Section 7.4, and Section 7.6 (for the purposes of clarity, (i) Astra's rights under Section 5.6 with respect to all Pre-Candidate Genes and Candidate Genes, that are not Genetics Candidate Genes, shall expire ninety (90) days following the end of the fifth Contract Year; (ii) Astra's diligence obligations set forth in Sections 7.1 and 7.4 with respect to all Candidate Genes, Validated Proteins and Validated Targets which are not Genetics Candidate Genes and Genetics Validated Targets shall commence at the end of the fifth Contract Year; and (iii) Millennium's rights set forth in Section 7.6 with respect to Niche Products which do not involve the use of a Genetics Candidate Gene or a Genetics Validated Target shall commence at the end of the fifth Contract Year). SECTION 2.8. DILIGENCE. Millennium shall, in the course of the Millennium Research Program: (a) use reasonable efforts in pursuing and conducting research and development of all Candidate Genes, Validated Targets, Validated Proteins and related assays; (b) furnish, maintain and preserve suitable and sufficient laboratory 20 27 facilities, equipment and personnel for the research and development to be undertaken by Millennium; (c) perform its obligations hereunder in good faith in a scientifically/commercially reasonable and workmanlike manner; (d) use reasonable efforts to carry out all work in compliance with any federal, state or local laws, regulations and guidelines governing the conduct of such work; and (e) cooperate with Astra in good faith, particularly with respect to unknowns or contingencies. SECTION 2.9. SMALL MOLECULE HIGH THROUGHPUT SCREENING. During the term of the Research Program, Astra shall have the option to engage Millennium to configure and/or implement high throughput screening for small molecule agonists and/or antagonists of any Validated Target. Astra shall exercise this option by providing to Millennium, in writing, a request that Millennium configure and/or implement small molecule high throughput screening of a stated Validated Target and shall state the desired compound libraries (Millennium compound libraries and/or Astra compound libraries) to be screened. If Astra compound libraries are to be screened, then Astra shall provide to Millennium such compound libraries in an appropriate format for use by Millennium in such screening. If Millennium compound libraries are to be screened at Astra, then Millennium shall provide to Astra such compound libraries in an appropriate format for use by Astra in such screening. If Millennium agrees to configure and/or implement a small molecule high throughput screening of a Validated Target, then Millennium shall provide to Astra an estimate of the fully burdened cost for such screening. If, after receipt of Millennium's estimate of the fully burdened cost for such screening, Astra engages Millennium, then Millennium shall perform the agreed upon work. Astra shall compensate Millennium for such configuration and/or implementation of small molecule high throughput screening at Millennium's fully burdened cost which shall not exceed the Millennium estimated cost by more than ten percent (10%) unless otherwise agreement by the parties in writing. ARTICLE III DISCLOSURE OF KNOW-HOW SECTION 3.1. MILLENNIUM KNOW-HOW. Commencing with the execution of this Agreement, Millennium shall disclose to Astra all existing Millennium Field Know-How which Millennium reasonably believes to be pertinent to the Research Program or which is reasonably requested by Astra, and all Millennium Core Technology Know-How which Millennium reasonably believes to be pertinent to the exercise of the licenses granted in Section 5.1 or which is reasonably requested by Astra. Millennium shall disclose to Astra on an ongoing basis for the duration of the Millennium Research Program (i) all additional Millennium Field Know-How which Millennium reasonably believes to be pertinent to the successful execution of the Research Program or which is reasonably requested by Astra, and (ii) all additional Millennium Core Technology Know-How which Millennium reasonably believes to 21 28 be pertinent to the exercise of the licenses granted in Section 5.1 or which is reasonably requested by Astra. Notwithstanding the foregoing, Millennium need not disclose to Astra any Know-How which Millennium is precluded from disclosing under any agreement binding upon it pursuant to any of the agreements listed in APPENDIX B, as amended by Millennium from time to time, PROVIDED, HOWEVER, that (a) Millennium shall not, without the prior written consent of Astra, enter into any future agreement with a third party relating to the Millennium Field Know-How which would limit the ability of Millennium to disclose Millennium Field Know-How to Astra pursuant to the provisions of this Agreement or is otherwise inconsistent with the licenses granted by Millennium to Astra in the Field under this Agreement, and (b) Millennium shall not, without the prior written consent of Astra, enter into any future agreement with a third party relating to the Millennium Core Technology Know-How which limits Millennium's right to utilize Millennium Core Technology Know-How in the Millennium Research Program. SECTION 3.2. BIOLOGICAL MATERIALS. Millennium shall also provide Astra with Millennium Field Know-How in the form of genes, gene fragments, vectors, cell lines, strains, transgenic organisms, model organisms, DNA and DNA fragments and other biological materials, as well as information relating to such materials, which Millennium reasonably believes to be pertinent to Astra's activities in the Research Program and the Astra Development Program or which is reasonably requested by Astra. Notwithstanding the foregoing, Millennium need not provide Astra with any such biological materials or related information which Millennium is precluded from providing under any agreement binding upon it pursuant to any of the agreements listed in APPENDIX B, as amended by Millennium from time to time, PROVIDED, HOWEVER, that Millennium shall not, without the prior written consent of Astra, enter into any future agreement with a third party relating to the Millennium Field Know-How which would limit the ability of Millennium to provide Astra, pursuant to this Section 3.2, with the biological materials and related information which Millennium reasonably believes to be pertinent to Astra's activities in the Research Program and the Astra Development Program. SECTION 3.3. ASTRA PROGRAM KNOW-HOW. Astra shall disclose to Millennium such Astra Program Know-How which Astra reasonably believes is needed by Millennium to carry out its obligations within the Millennium Research Program hereunder; PROVIDED, HOWEVER, that Astra need not disclose to Millennium any Astra Program Know-How which Astra is precluded from disclosing under any agreement binding upon it. Millennium's right to use Astra Program Know-How shall be limited to the Millennium Research Program. 22 29 ARTICLE IV CONFIDENTIALITY SECTION 4.1. CONFIDENTIAL INFORMATION AND KNOW-HOW. All Know-How or other Confidential Information disclosed by one Party to the other during the term of this Agreement shall not be used by the receiving Party except in connection with the Research Program or the identification, selection, preparation, development, manufacture or sale of Products (or, in the case of Millennium Core Technology Know-How, for permitted uses outside the Field), shall be maintained in confidence by the receiving Party (except to the extent reasonably necessary for regulatory approval of Products developed by Astra), and shall not otherwise be disclosed by the receiving Party to any other person, firm, or agency, governmental or private, without the prior written consent of the disclosing Party, except to the extent that the (a) was known or used by the receiving Party prior to its date of disclosure to the receiving Party; or (b) either before or after the date of the disclosure to the receiving Party is lawfully disclosed to the receiving Party by sources other than the disclosing Party rightfully in possession of the Confidential Information; or (c) either before or after the date of the disclosure to the receiving Party becomes published or generally known to the public, other than through the sale of Products in the ordinary course, through no fault or omission on the part of the receiving Party or its Sublicensees; or (d) is independently developed by or for the receiving Party without reference to or reliance upon the Confidential Information; or (e) is required to be disclosed by the receiving Party to comply with applicable laws, to defend or prosecute litigation or to comply with governmental regulations, PROVIDED, THAT the receiving Party provides prior written notice of such disclosure to the other Party and takes reasonable and lawful actions to avoid and/or minimize the degree of such disclosure. SECTION 4.2. EMPLOYEE OBLIGATIONS. Millennium and Astra each agree that it shall provide Know-How and other Confidential Information received from the other Party only to its employees, consultants and advisors who have a need to know and have an obligation to treat such information and materials as confidential. 23 30 SECTION 4.3. PUBLICATIONS. The Parties acknowledge that scientific lead time is a key element of the value of the research to be performed under this Agreement and further agree that scientific publications must be strictly monitored to prevent any adverse effect of premature publication of results of the Research Program. The Joint Management Team will establish a procedure for publication review and approval and each Party shall first submit to the other Party an early draft of all such publications, whether they are to be presented orally or in written form, at least sixty (60) days prior to submission for publication. Each Party shall review each such proposed publication in order to avoid the unauthorized disclosure of a Party's Confidential Information and to preserve the patentability of inventions arising from the research performed in the course of the Research Program and/or the Astra Development Program. If, as soon as reasonably possible but no longer than sixty (60) days following receipt of an advance copy of a Party's proposed publication, the other Party informs such Party that its proposed publication contains Confidential Information of the other Party, then such Party shall delete such Confidential Information from its proposed publication. If, as soon as reasonably possible but no longer than sixty (60) days following receipt of an advance copy of a Party's proposed publication, the other Party informs such Party that its proposed publication could be expected to have a material adverse effect on any Program Patent Rights or Program Know-How, then such Party shall delay such proposed publication, sufficiently long to permit the timely preparation, first filing, international filing and publication of patent application(s) on the information involved, PROVIDED, HOWEVER, that (i) with respect to any agreement between Millennium and a third party listed in APPENDIX B as of the Effective Date (and any extension thereof), the terms and conditions of such agreement (and any extensions thereof) that govern the review, approval and delay of any scientific publications relating to such agreement shall remain in full force and effect notwithstanding any provision of this Section 4.3 to the contrary, and (ii) with respect to any future agreement entered into by Millennium with a third party relating to the Millennium Field Patent Rights and/or the Millennium Field Know-How, Millennium shall not agree to any terms and conditions governing the review, approval and delay of scientific publications that are inconsistent with those set forth in this Section 4.3, without the prior written consent of Astra. SECTION 4.4. TERM. All obligations of confidentiality and non-use imposed under this Article IV shall expire ten (10) years following termination of the Millennium Research Program. 24 31 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. ARTICLE V GRANT OF RIGHTS SECTION 5.1. LICENSES TO MILLENNIUM CORE TECHNOLOGY. Subject to the terms and conditions of this Agreement, Millennium hereby grants to Astra: (a) a fully paid-up, non-royalty bearing (other than with respect to Products as provided in Section 8.5), non-exclusive right and license in the Territory, without the right to grant sublicenses, under Millennium Core Technology Patent Rights and Millennium Core Technology Know-How [**] within and outside the Field during the term of the Research Program and thereafter; (b) a fully-paid up, non-royalty bearing (other than with respect to Products as provided in Section 8.5), non-exclusive right and license, without the right to grant sublicenses, under any applicable Millennium copyright to copy and use in the Territory all computer software included in Millennium Core Technology, in object code form only, provided to Astra by Millennium during the term of the Millennium Research Program for Astra's own use only, inside and outside the Field, during and after the term of the Research Program. SECTION 5.2. LICENSES TO MILLENNIUM FIELD PATENT RIGHTS AND MILLENNIUM FIELD KNOW-HOW FOR RESEARCH PURPOSES. Subject to the terms and conditions of this Agreement, Millennium hereby grants to Astra a fully paid-up, non-royalty bearing (other than with respect to Products as provided in Section 8.5), co-exclusive (with Millennium and its permitted licensees pursuant to this Article V), right and license, without the right to grant sublicenses, under Millennium Field Patent Rights and Millennium Field Know-How, to make and use Pre-Candidate Genes, Candidate Genes, Validated Targets and Validated Proteins in the Territory to research and develop Products in accordance with the terms of this Agreement. SECTION 5.3. PRODUCT LICENSES. (a) PRODUCTS THAT COMPRISE A PROGRAM SMALL MOLECULE DRUG, A RELATED SMALL MOLECULE DRUG, A PROGRAM PEPTIDO MIMETIC DRUG, A RELATED PEPTIDO MIMETIC DRUG OR A MODIFIED DRUG. 25 32 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. (i) Subject to the terms and conditions of this Agreement, Millennium hereby grants to Astra an exclusive, royalty bearing license, under Millennium Field Patent Rights and Millennium Field Know-How, to research, have researched, develop, have developed, make, have made, import, use, have used, offer to sell, sell and have sold, within the Field in the Territory, Products that comprise a Program Small Molecule Drug, a Related Small Molecule Drug, a Program Peptido Mimetic Drug, a Related Peptido Mimetic Drug or a Modified Drug. Such license shall include the right to grant sublicenses, on notice to Millennium as soon as reasonably possible, to make or have made, import, use or have used (other than to research, have researched, develop or have developed), offer to sell, sell or have sold such Products within the Field in the Territory. Astra shall be responsible for all obligations of Astra's Sublicensees hereunder, and guarantees to Millennium the performance of all such obligations. The payment of royalties on Net Sales of Products shall remain a direct obligation of Astra, regardless of whether sales are made by Astra or an Astra Sublicensee. (ii) In the event that [**] that comprises a [**] for use in the [**] (as evidenced by the designation of such [**] or [**]), then [**] granted in Section [**] shall be deemed to include the [**] contained within such Product, or any [**] or any [**] corresponding to the [**] or [**] contained within such Product, for any [**], subject to the [**] pursuant to Section 8.5. (b) PRODUCTS THAT COMPRISE A PROGRAM ANTISENSE DRUG, A RELATED ANTISENSE DRUG OR A PROGRAM PROTEIN MIMIC DRUG. (i) During the term of the Research Program and the Astra Development Program, Millennium and Astra agree to discuss collaborations concerning the development and commercialization of Products that comprise a Program Antisense Drug, a Related Antisense Drug or a Program Protein Mimic Drug for use in the Field. The initial opportunity to begin such discussions concerning such therapeutic Products shall arise when, in the course of the Research Program, either Party recognizes the possibility for developing such a therapeutic Product or collaborating with a commercial third party who possesses technology relevant to the development of such a therapeutic Product. When this occurs, the Party recognizing such possibility shall present 26 33 such information to the other Party and the Parties shall have a period of sixty (60) days in which to decide whether to begin good faith negotiations with each other concerning a potential collaboration, it being understood that NEITHER Party shall have any obligation to enter into such negotiations. If the Parties decide to collaborate, the terms of such collaboration shall be governed by the terms and conditions of a separate agreement to be negotiated in good faith by the Parties. (ii) If either (A) the Parties choose not to negotiate with each other concerning a collaboration regarding a Product that comprises a Program Antisense Drug, a Related Antisense Drug or a Program Protein Mimic Drug, or (B) the Parties cannot agree to the terms of a collaboration regarding such a therapeutic Product, then Millennium shall grant to Astra (1) an exclusive license under the Millennium Field Patent Rights and the Millennium Field Know-How to research, have researched, develop, have developed, make, have made, import, use, have used, offer to sell, sell and have sold, within the Field in the Territory, any such Product that comprises a Program Antisense Drug, a Related Antisense Drug or a Program Protein Mimic Drug that is administered by Airway Delivery, with the right to grant sublicenses, on prior notice to Millennium, to make or have made, import, use or have used (other than to research, have researched, develop or have developed), offer to sell, sell or have sold any such Product within the Field in the Territory, (2) a co-exclusive license under the Millennium Field Patent Rights and the Millennium Field Know-How to develop, have developed, make, have made, import, use, have used, offer to sell, sell and have sold outside the Field in the Territory, any Product that comprises a Program Antisense Drug, a Related Antisense Drug or a Program Protein Mimic Drug that is administered by Airway Delivery for which Astra or its permitted sublicensee has commenced a bona fide clinical investigation for Airway Delivery of such Product for an indication within the Field in the Territory, and (3) a co-exclusive license under the Millennium Field Patent Rights and the Millennium Field Know-How to research, have researched, develop, have developed, make, have made, import, use, have used, offer to sell, sell and have sold, within the Field in the Territory, any such Product that comprises a Program Antisense Drug or a Related Antisense Drug that is administered by any means other than Airway Delivery, with the right to grant sublicenses, on prior notice to Millennium, to make or have made, import, use or have used (other than to research, have researched, develop or have developed), offer to sell, sell or have sold any such Product within the Field in the Territory. Astra shall be responsible for all obligations of Astra's Sublicensees hereunder, and guarantees to Millennium the performance of all such obligations. The 27 34 payment of royalties on Net Sales of Products shall remain a direct obligation of Astra, regardless of whether sales are made by Astra or an Astra Sublicensee. Millennium shall have (w) the co-exclusive right, either alone or in collaboration with others, to research, have researched, develop, have developed, make, have made, import, use, have used, offer to sell, sell and have sold, within the Field in the Territory, any Product that comprises a Program Antisense Drug or a Related Antisense Drug that is administered by any means other than Airway Delivery; (x) the exclusive right, either alone or in collaboration with others, to research, have researched, develop, have developed, make, have made, import, use, have used, offer to sell, sell and have sold, within the Field in the Territory, any Product that comprises a Program Protein Mimic Drug that is administered by any means other than Airway Delivery; (y) the exclusive right, either alone or in collaboration with others, to research, have researched, develop, have developed, make, have made, import, use, have used, offer to sell, sell and have sold, outside the Field in the Territory, any Product that comprises a Program Antisense Drug, a Related Antisense Drug or Program Protein Mimic Drug that is administered by any means other than Airway Delivery; and (z) the exclusive right, either alone or in collaboration with others, to research, have researched, develop, have developed, make, have made, import, use, have used, offer to sell, sell and have sold, outside the Field in the Territory, any Product that comprises a Program Antisense Drug, a Related Antisense Drug or Program Protein Mimic Drug that is administered by Airway Delivery UNLESS Astra or its permitted sublicensee has commenced a bona fide clinical investigation for Airway Delivery of such Product for an indication within the Field in the Territory in which case Millennium's right shall be co-exclusive with Astra. (c) RIGHT OF FIRST NEGOTIATION FOR PRODUCTS THAT COMPRISE A PROGRAM PROTEIN DRUG OR PROGRAM ANALOG PROTEIN DRUG. (i) During the term of the Research Program and the Astra Development Program, Astra shall have a right of first negotiation for collaborations concerning the development and commercialization of Products that comprise a Program Protein Drug or a Program Analog Protein Drug for use in the Field. The initial opportunity to begin such discussions concerning such therapeutic Products shall arise when, in the course of the Research Program, either Party recognizes the possibility for developing such a therapeutic Product or collaborating with a commercial third party who possesses technology relevant to the development of such a therapeutic Product. When this occurs, the Party recognizing such possibility shall present such information to the other 28 35 Party and Astra shall have a period of sixty (60) days in which to decide whether to begin good faith negotiations with Millennium concerning a potential collaboration. During such sixty (60) day period, Millennium shall not enter into an agreement with a commercial third party concerning such collaboration. If Astra elects to enter into good faith negotiations with Millennium, then the Parties shall have sixty (60) days within which to enter into a definitive agreement for such collaboration. During this sixty (60) day period, Millennium shall not enter into an agreement with a commercial third party concerning such collaboration. (ii) If either (A) Astra chooses not to negotiate with Millennium concerning a collaboration regarding a Product that comprises a Program Protein Drug or a Program Analog Protein Drug, or (B) if the Parties cannot agree to the terms of a collaboration regarding such a therapeutic Product, then Millennium shall grant to Astra: (1) an exclusive license under the Millennium Field Patent Rights and the Millennium Field Know-How to research, have researched, develop, have developed, make, have made, import, use, have used, offer to sell, sell and have sold, within the Field in the Territory, any such Product that comprises a Program Protein Drug or a Program Analog Protein Drug that is administered by Airway Delivery, and (2) a co-exclusive license under the Millennium Field Patent Rights and the Millennium Field Know-How to develop, have developed, make, have made, import, use, have used, offer to sell, sell and have sold, outside the Field in the Territory, any such Product that comprises a Program Protein Drug or a Program Analog Protein Drug that is administered by Airway Delivery for which Astra or its permitted sublicensee has commenced a bona fide clinical investigation for Airway Delivery of such Product for an indication within the Field in the Territory; in each case with the right to grant sublicenses, on prior notice to Millennium, to make or have made, import, use or have used (other than to research, have researched, develop or have developed), offer to sell, sell or have sold any such Product within the Field in the Territory. Astra shall be responsible for all obligations of Astra's Sublicensees hereunder, and guarantees to Millennium the performance of all such obligations. The payment of royalties on Net Sales of Products shall remain a direct obligation of Astra, regardless of whether sales are made by Astra or an Astra Sublicensee. Millennium shall have (x) the exclusive right, either alone or in collaboration with others, to research, have researched, develop, have developed, make, have made, import, use, have used, offer to sell, sell and have sold, within the Field in the Territory, any Product that comprises a Program Protein Drug or a Program Analog Protein Drug that is administered by any means other than Airway Delivery; (y) the exclusive right, either alone or in collaboration with 29 36 others, to research, have researched, develop, have developed, make, have made, import, use, have used, offer to sell, sell and have sold, outside the Field in the Territory, any Product that comprises a Program Protein Drug or a Program Analog Protein Drug that is administered by any means other than Airway Delivery; and (z) the exclusive right, either alone or in collaboration with others, to research, have researched, develop, have developed, make, have made, import, use, have used, offer to sell, sell and have sold, outside the Field in the Territory, any Product that comprises a Program Protein Drug or a Program Analog Protein Drug that is administered by Airway Delivery UNLESS Astra or its permitted sublicensee has commenced a bona fide clinical investigation for Airway Delivery of such Product for an indication within the Field in the Territory in which case Millennium's right shall be co-exclusive with Astra. SECTION 5.4. MILLENNIUM'S RETAINED RIGHTS. Any of Millennium's rights to Millennium Field Know-How, Millennium Field Patent Rights, Millennium Core Technology Know-How and Millennium Core Technology Patent Rights not specifically licensed to Astra pursuant to this Article V shall be retained by Millennium, including without limitation (a) Millennium's exclusive right to make, have made, use, and have used Pre-Candidate Genes, Candidate Genes, Validated Targets and Validated Proteins in the Territory to research and develop pharmaceutical products for use outside the Field except for Products that comprise (i) a Program Small Molecule Drug, a Related Small Molecule Drug, a Program Peptido Mimetic Drug, a Related Peptido Mimetic Drug or a Modified Drug, or (ii) a Program Antisense Drug, a Related Antisense Drug, a Program Protein Mimic Drug, a Program Protein Drug, or a Program Analog Protein Drug if Astra has commenced a bona fide clinical investigation for Airway Delivery of any such Product for an indication in the Field in which case Millennium shall have a co-exclusive right with Astra for Airway Delivery of such Products outside the Field, and (b) Millennium's exclusive right to research, have researched, develop, have developed, make, have made, import, use, have used, offer to sell, sell and have sold, within and outside the Field in the Territory, (i) any Small Molecule Drug (subject to the provisions of Section 5.5 with respect to a Millennium Drug), Peptido Mimetic Drug (subject to the provisions of Section 5.5 with respect to a Millennium Drug), Antisense Drug, Protein Drug, Analog Protein Drug and/or Protein Mimic Drug, in each case, that is owned or otherwise controlled by Millennium and that is not a Product, and (ii) any Gene Therapy Drug and/or Diagnostic Product that is owned or otherwise controlled by Millennium. SECTION 5.5. MILLENNIUM DRUGS. Millennium shall retain the right to exploit Millennium Field Know-How and any other Know-How developed by Millennium in the course of the Research Program to develop and use, whether alone or in collaboration with third parties, compound screens that embody or are based on 30 37 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. Validated Targets that result from the Millennium Research Program (the "Millennium Compound Screens"). In the event that as part of its efforts to develop Millennium Drugs, Millennium transfers a Millennium Compound Screen to a third party for the purpose of such third party conducting screening efforts at its facility (a "Third Party Offsite Screening Program"), Millennium shall notify Astra in writing of such arrangement and provide written evidence that such third party has no right either to develop or otherwise commercialize any resulting Millennium Drug in the Field or to further sublicense rights to use the Millennium Compound Screen to another third party. The foregoing notwithstanding, [**](as defined below) to undertake a [**]. As used herein, a [**] shall mean a [**] by the [**] in its then most current survey among the [**] derived from the [**]. Millennium shall retain the exclusive right to research, have researched, develop, have developed, make, have made, import, use, have used, offer to sell, sell and have sold, any Millennium Drug outside the Field in the Territory, either alone or in collaboration with others. In the event that, during the term of the Millennium Research Program or the Astra Development Program, a Millennium Drug owned, licensed with the right to grant sublicenses, or otherwise controlled by Millennium is identified to have potential as a therapeutic product within the Field, then Millennium shall (a) inform Astra of the existence and potential utility in the Field of such Millennium Drug and (b) at Astra's request, enter into discussions with Astra regarding the possibility of a collaboration between Millennium and Astra concerning the research, development and/or commercialization of such Millennium Drug within the Field. Millennium shall not, either alone or in collaboration with a third party, make, have made, import, use, have used, offer to sell, sell, or have sold such Millennium Drug within the Field in the Territory, without the prior written consent of Astra. In the event that Astra is unable to fully exploit its rights to commercialize Products within the Field in the Territory, as set forth in Section 5.3(a)(i), without infringing an intellectual property right that relates to a Millennium Drug and is owned by, licensed to (with the right to grant sublicenses) or otherwise controlled by Millennium, Millennium shall grant to Astra a license (or sublicense) under such intellectual property right to the extent necessary to enable Astra to fully exploit its rights as set forth in Section 5.3(a)(i); such license (or sublicense) shall not impose on Astra any additional financial obligations beyond those otherwise provided for herein. SECTION 5.6. RIGHTS TO POTENTIAL CANDIDATE GENES, VALIDATED TARGETS AND VALIDATED PROTEINS. Within [**] following the expiration of the Millennium Research 31 38 Program, Astra may designate any Pre-Candidate Gene or Candidate Gene as a Validated Target and/or a Validated Protein, PROVIDED, HOWEVER, that at the time of such designation(s) Astra shall pay to Millennium the following milestone payment(s): (a) two hundred thousand dollars ($200,000) for the first such designated Validated Target or Validated Protein; (b) three hundred and fifty thousand dollars ($350,000) for the second such designated Validated Target or Validated Protein; (c) three hundred and fifty thousand dollars ($350,000) for the third such designated Validated Target or Validated Protein; and (d) five hundred thousand dollars ($500,000) for each additional designated Validated Target or Validated Protein. Upon any such designation(s), each designated Validated Target and/or Validated Protein shall be subject to all terms and conditions of this Agreement that relate to any Validated Target and/or Validated Protein. SECTION 5.7. ASTRA'S RIGHTS TO DIAGNOSTIC PRODUCTS NOT BEING COMMERCIALIZED BY MILLENNIUM. Notwithstanding Millennium's exclusive rights to Diagnostic Products set forth in Section 5.4, if Astra is developing a Product for which it is necessary or useful to develop a Diagnostic Product to ascertain the predisposition of an individual to respond favorably or unfavorably to the administration of such Product (for example, where (a) the United States Food and Drug Administration (or a comparable regulatory authority in another country) requires that an individual be tested with a Diagnostic Product prior to the administration of the associated Product, as a condition of registering and approving for commercial sale such Product, or (b) it is determined, in the reasonable judgment of Astra (based on written information that is made available to Millennium), that a Diagnostic Product must be marketed and sold with such Product in order for such Product to achieve significant market penetration in the Territory), and Millennium is unwilling or unable to develop and commercialize such Diagnostic Product either alone or in collaboration with a third party, then Astra shall have the right to develop and commercialize a Diagnostic Product, either alone or in collaboration with a third party, that is based on polymorphisms of a Genetics Candidate Gene or Validated Target under the terms set forth in a separate agreement. ARTICLE VI PATENT OWNERSHIP, PROTECTION AND RELATED MATTERS SECTION 6.1. OWNERSHIP. Astra shall own all inventions within the scope of the Research Program or the Astra Development Program made solely by its employees, and Millennium shall own all inventions within the scope of the Research Program made solely by its employees. All inventions made jointly by employees of Astra and employees of Millennium shall be owned jointly by Astra and Millennium. All patent applications and patents covering any invention made within the scope of the 32 39 Research Program or the Astra Development Program shall be owned by the Parties or Party, as the case may be, that own(s) said invention. SECTION 6.2. PATENTABLE INVENTIONS. (a) If a patentable invention related to the Field is (i) conceived or reduced to practice prior to the Effective Date and included within Millennium Field Patent Rights, or (ii) conceived in the course of and within the scope of the Research Program and is reduced to practice within the course of the Research Program or the Astra Development Program (with respect to either subsection (i) or (ii), a "Section 6.2 Invention"), Astra and Millennium shall discuss that invention and the desirability of filing a United States patent application covering such invention, as well as any foreign counterparts. The Party owning the Section 6.2 Invention (determined in accordance with Section 6.1) shall make the final decision with respect to any such filings. If a Section 6.2 Invention is made jointly, the Joint Management Team shall determine which Party shall file and prosecute the application. If either (1) the Joint Management Team is unable to make such a determination or (2) no decision is made regarding which Party shall file and prosecute the application covering such jointly owned invention, then in the event such jointly made invention relates to a (i) Candidate Gene, Validated Target, Validated Protein, Millennium Drug, Gene Therapy Drug or Diagnostic Product, Millennium shall have the first option to file and prosecute the application for such jointly made inventions, and (ii) Modified Drug, Program Small Molecule Drug, Related Small Molecule Drug, Program Peptido Mimetic Drug, Related Peptido Mimetic Drug, Program Antisense Drug, Related Antisense Drug, Program Protein Drug, Program Analog Protein Drug or Program Protein Mimic Drug, Astra shall have the first option to file and prosecute the application for such jointly made invention. In the event that either Party declines the option to file and prosecute any such patent application for such jointly made invention, the Party not having such option may, upon written notice to the other Party, file and prosecute the application for such jointly made inventions. (b) Subject to (i) the grant of licenses to Astra under Article V, (ii) the limitations on Astra's rights outside the Field, (iii) the retained rights of Millennium and (iv) Astra's royalty payment obligations for Products under Article VIII, each Party shall be free to use jointly owned patents within the Territory without restriction and without payment of any additional compensation to the other Party. SECTION 6.3. REVIEW AND COMMENT. Each Party shall provide the other Party with a copy of any patent application which first discloses any Section 6.2 Invention prior to filing the first of such applications in any jurisdiction, if possible, for review 33 40 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. and comment by such other Party, which shall maintain any such patent application in confidence, pursuant to Article IV. SECTION 6.4. NOTICE OF DECISION. If a Party decides not to file, prosecute or maintain an application or patent on a Section 6.2 Invention in any country, it shall give the other Party reasonable notice to this effect. After such notice, the other Party may file, or maintain the application or patent, in which event the first Party shall execute such documents and perform such acts as may be reasonably necessary for the other Party to file, prosecute or maintain such application. SECTION 6.5. PATENT TERM EXTENSIONS. The Parties shall cooperate, if necessary and appropriate, with each other in gaining patent term extension wherever applicable to Program Patent Rights covering Products. The Parties shall, if necessary and appropriate, use reasonable efforts to agree upon a joint strategy relating to patent term extensions, but, in the absence of mutual agreement with respect to any extension issue, the Party selling the Product covered by such extension shall determine which patents shall be extended, PROVIDED THAT if both Parties are selling such Product, Astra shall have the final decision how and when to apply for such extension. All filings for such extension shall be made by the Party to whom the patent is assigned, PROVIDED, HOWEVER, that in the event that the Party to whom the patent is assigned elects not to file for an extension, such Party shall (i) inform the other Party of its intention not to file and (ii) grant the other Party the right to file for such extension. SECTION 6.6. COSTS AND EXPENSES. Each Party shall bear its own costs and expenses in filing, prosecuting, maintaining and extending Patent Rights arising out of the Research Program and the Astra Development Program, except that Astra shall reimburse Millennium [**] of the costs of filing, prosecuting, maintaining and extending Millennium Field Patent Rights incurred on and after the Effective Date. Astra shall, however, have the right to decline to so reimburse Millennium with respect to a Millennium Field Patent Right in any country or countries in the Territory by so notifying Millennium in writing, in which event the licenses granted to Astra in Article V with respect to such Millennium Field Patent Right in such country or countries shall terminate, unless otherwise agreed in writing. SECTION 6.7. THIRD PARTY INFRINGEMENT. (a) Millennium and Astra each agrees to take reasonable actions to protect the Program Patent Rights from infringement in the Field and to protect the Program Know-How from unauthorized use in the Field, when, 34 41 from its own knowledge or upon notice by the other Party, the Party with knowledge or receiving notice becomes aware of the reasonable probability that such infringement or unauthorized use exists in the Field. (b) Within sixty (60) days of becoming aware of the reasonable probability of an interference or infringement of the Program Patent Rights in the Field or unauthorized use of the Program Know-How in the Field, the Responsible Party (as defined below) shall decide whether to institute an infringement suit or take other appropriate action that it believes is reasonably required to protect the Program Patent Rights and Program Know-How in the Field. If the Responsible Party fails to institute such suit or take such action within such 60-day period, then the other Party shall have the right at its sole discretion to institute such suit or other appropriate action in the name of either or both Parties. In such event, the Responsible Party shall cooperate with the other Party to the extent reasonably possible. (c) Neither Party shall settle or compromise any claim or proceeding relating to Program Patent Rights or Program Know-How in the Field without the consent of the other Party, which consent shall not be unreasonably withheld, PROVIDED THAT no such consent of Millennium shall be required with respect to Patent Rights owned by, licensed to or otherwise controlled by Astra (other than Millennium Field Patent Rights and Millennium Core Technology Patent Rights). (d) As used herein, the term "Responsible Party" means (i) Astra with respect to Patent Rights owned by, licensed to or otherwise controlled by Astra (other than Millennium Field Patent Rights and Millennium Core Technology Patent Rights) and Patent Rights owned jointly by Astra and Millennium, and (ii) Astra with respect to Millennium Field Patent Rights, subject to agreements between Millennium and any third party which has licensed such Patent Rights to Millennium. (e) Each Party shall assume and pay all of its own out-of-pocket costs incurred in connection with any litigation or proceedings described in this Section 6.7, including, without limitation, the fees and expenses of that Party's counsel. (f) Any recovery obtained by any Party as a result of any proceeding described in this Section 6.7 or from any counterclaim or similar claim asserted in a proceeding described in Section 6.10, by settlement or otherwise, shall be applied in the following order of priority: 35 42 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. (i) first, to reimburse each Party for all litigation costs in connection with such proceeding paid by that Party and not otherwise recovered; and (ii) second, the remainder of the recovery shall be paid [**] to Astra and [**] to Millennium. SECTION 6.8. MILLENNIUM CORE TECHNOLOGY. Millennium shall have the right to make all determinations, control any proceedings and settle or compromise any claims relating to infringement or unauthorized use of Millennium Core Technology Patent Rights or Millennium Core Technology Know-How. SECTION 6.9. NOTICE OF CERTIFICATION. Millennium and Astra each shall immediately give notice to the other of any certification filed under the U.S. "Drug Price Competition and Patent Term Restoration Act of 1984," or comparable law in other countries where applicable Program Patent Rights are maintained, claiming that a Program Patent Right is invalid or that any infringement will not arise from the manufacture, use or sale of any Product in the Field by a third party. If the Responsible Party decides not to bring infringement proceedings against the entity making such a certification, the Responsible Party shall give notice to the other Party of its decision not to bring suit within twenty-one (21) days after receipt of notice of such certification. The other Party may then, but is not required to, bring suit against the Party that filed the certification. Any suit by Astra or Millennium shall either be in the name of Astra or in the name of Millennium, or jointly by Astra and Millennium, as may be required by law. For this purpose, the Party not bringing suit shall execute such legal papers necessary for the prosecution of such suit as may be reasonably requested by the Party bringing suit. SECTION 6.10. CLAIMED INFRINGEMENT; CLAIMED INVALIDITY. (a) If the activities of either Party in connection with the Research Program, the Astra Development Program or as the result of making, importing, using, offering to sell or selling a Product in the Field result in a claim of patent infringement or other violation of the intellectual property rights of any third party, the Party who is accused of such infringement shall defend itself at its sole cost. The other Party shall cooperate with the accused Party in such defense and prosecution and shall have the right to be represented by counsel of its own choice. 36 43 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. (b) If a third party at any time asserts a claim that any Program Patent Right is invalid or otherwise unenforceable (an "Invalidity Claim"), whether as a defense in an infringement action brought by Astra or Millennium pursuant to Section 6.7 or Section 6.9, or in an action brought against Astra or Millennium, the Parties shall cooperate with each other in preparing and formulating a response to such Invalidity Claim. The Party responsible for responding to such claim, at its sole expense, shall be initially the Responsible Party, subject to the other Party's right, at its sole expense, to assume responsibility if the Responsible Party elects not to do so. Neither Party shall settle or compromise any Invalidity Claim without the consent of the other Party, which consent shall not be unreasonably withheld, PROVIDED THAT no such consent of Millennium shall be required with respect to an Invalidity Claim relating to Patent Rights owned by, licensed to or otherwise controlled by Astra (other than Millennium Field Patent Rights and Millennium Core Technology Patent Rights) ARTICLE VII ASTRA DUE DILIGENCE SECTION 7.1. CANDIDATE GENES. After the term of the Research Program and during the term of the Astra Development Program, Astra shall use [**] to move each Candidate Gene into Validated Target or Validated Protein status. Such efforts [**] in connection with [**] that are at a [**] and that are of [**] and [**]. Within thirty (30) days after the end of each calendar half-year during the term of the Astra Development Program, Astra shall provide Millennium with a written report describing Astra's progress in moving each Candidate Gene into Validated Target or Validated Protein status. If Astra fails to satisfy its diligence obligations as set forth in this Section 7.1, as agreed between the Parties or determined pursuant to the dispute resolution process as set forth in Section 12.2, with respect to any Candidate Gene, then Astra's exclusive rights with respect to therapeutic products that are identified through use of such Candidate Gene and its Validated Target or Validated Protein, as the case may be, [**] (with Millennium, either alone or in collaboration with others), as [**]. SECTION 7.2. VALIDATED PROTEINS. During the term of the Research Program and the Astra Development Program, Astra shall use [**] to utilize each Validated Protein to discover and develop Products. Such efforts [**] in connection with [**] 37 44 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. that are at a [**] and that are of [**] and [**]. Within thirty (30) days after the end of each calendar half-year during the term of the Research Program and the term of the Astra Development Program, Astra shall provide Millennium with a written report describing Astra's progress in using Validated Proteins to discover and develop Products. If Astra fails to satisfy its diligence obligations as set forth in this Section 7.2, as agreed between the Parties or determined pursuant to the dispute resolution process as set forth in Section 12.2, with respect to any Validated Protein, then Astra's exclusive rights (if any) with respect to therapeutic products that are identified through the use of such Validated Protein and the Candidate Gene from which it was derived, [**](with Millennium, either alone or in collaboration with others), as [**]. SECTION 7.3. VALIDATED TARGETS. During the term of the Research Program and the Astra Development Program, Astra shall use [**] to utilize each Validated Target to discover and develop Hits, Leads, Candidate Drugs and Products. Such efforts [**] in connection with [**] that are at [**] and that are of [**] and [**]. Within thirty (30) days after the end of each calendar half-year during the term of the Research Program and the term of the Astra Development Program, Astra shall provide Millennium with a written report describing Astra's progress in using Validated Targets to discover and develop Hits, Leads, Candidate Drugs and Products. If Astra fails to satisfy its diligence obligations as set forth in this Section 7.3, as agreed between the Parties or determined pursuant to the dispute resolution process as set forth in Section 12.2, with respect to any Validated Target, then Astra's exclusive rights with respect to therapeutic products that are identified through the use of such Validated Target, and the Candidate Gene from which it was derived, [**] (with Millennium, either alone or in collaboration with others) as [**]. SECTION 7.4. ASTRA MINIMUM EFFORTS. Notwithstanding any other provisions in this Agreement after the Research Program and during the Astra Development Program, [**] to use [**] (a) [**] into [**] or [**], (b) to [**], or (c) to [**], if Astra is using [**] and the [**]. SECTION 7.5. COMMERCIALIZATION. Astra agrees to use [**] to conduct required clinical development activities and seek regulatory approval in all Major Market Countries for each Product. Such efforts shall [**] in connection with [**] that are at a [**] in the [**] and are of [**]. Upon receipt of regulatory approval, Astra agrees to use [**] to market and sell each such Product in all Major Market Countries, provided, however, that [**] in a Major Market Country where (i) [**] to the [**] of the [**], and (ii) [**] with reasonable written documentation [**]. Within thirty (30) days after the end of each calendar half-year, Astra shall provide 38 45 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. Millennium with a written report describing Astra's efforts with respect to the development and/or commercialization of each Product in each Major Market Country. [**], as agreed between the Parties or determined pursuant to the dispute resolution process as set forth in Section 12.2, with respect to any Product in any Major Market Country (an "Abandoned Market"), Millennium shall notify Astra. [**] such [**], then [**] with respect to commercialization of therapeutic products in such Abandoned Market shall be [**] (with Millennium, either alone or in collaboration with others), as Millennium's [**], and Millennium shall have the right, either alone or in collaboration with others, to develop and commercialize therapeutic products for use in the Field in the Abandoned Market that are identified through the use of the Candidate Gene from which such Product was derived, and the related Validated Target or Validated Protein, as the case may be. [**] with respect to such Product in other Major Market Countries, or to other Products in the Abandoned Market, [**]. Notwithstanding the foregoing, [**] to develop or commercialize a Product in a Major Market Country if (a) Astra provides to Millennium [**] from the perspective of Millennium, and Millennium, following consideration of [**] as set forth in this Section 7.5 with respect to such Product in such Major Market Country or (b) [**] Product in such Major Market Country and the sale of such other Product will [**]. SECTION 7.6. NICHE PRODUCTS. From time to time after the conclusion of the Research Program, but no more than once per Contract Year, Millennium shall have the right to submit to Astra a written proposal relating to the development of a product for a specific indication (a "Specified Indication") in the Field (excluding the following indications: [**] and any other indication in the Field with respect to which Astra is actively pursuing [**]) (a "Niche Product Development Proposal"). Notwithstanding the foregoing, Millennium may not make a Niche Product Development Proposal which involves the use of a Candidate Gene, Validated Target or Validated Protein currently under active development by Astra in the Astra Research Program or the Astra Development Program. Each Niche Product Development Proposal shall include a preliminary development plan to identify and/or develop such a product as well as a description of known linkages between the Specified Indication and any Candidate Gene, Validated Target or Validated Protein. Astra shall provide Millennium with notification, within ninety (90) days after receipt of a Niche Product Development Proposal, indicating whether or not it has a good faith interest in evaluating further the Niche Product Development Proposal (an "Astra Preliminary Notice"). If Astra indicates in the Astra Preliminary Notice that it wishes to evaluate further the Niche Product Development Proposal, Astra shall undertake such evaluation in a reasonably expeditious manner. Astra shall provide Millennium with notification as soon as possible, but in no event later 39 46 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. than nine (9) months after the date of the Astra Preliminary Notice, whether it intends to develop a product for the Specified Indication set forth in the Niche Product Development Proposal (the "Astra Final Notice"). If either (i) the Astra Preliminary Notice indicates that Astra does not wish to evaluate the opportunity to develop a product for such Specified Indication or (ii) the Astra Final Notice indicates that Astra does not wish to develop a product for such Specified Indication, or (iii) if Astra does not provide the Astra Preliminary Notice or Astra Final Notice in the requisite time periods, Millennium shall have the co-exclusive right (with Astra) to develop (either alone or in collaboration with others) a product for the Specified Indication and shall have all requisite rights and licenses under Millennium Field Patent Rights or Millennium Field Know-How, including rights to sublicense, necessary for the development, use and sale of such a product solely for such Specified Indication. In such event, Millennium and/or any third party collaborators shall use [**] to develop such product for the Specified Indication, conduct required clinical development activities, seek regulatory approvals and commercialize such product, PROVIDED THAT Millennium may, at any time, by written notice to Astra, cease such efforts and waive its rights to develop and commercialize such product for the Specified Indication. In the event that Astra indicates in the Astra Final Notice that Astra wishes to develop a product for the Specified Indication, then (i) such product shall be considered a Product for purposes of this Agreement, and (ii) Astra's development and commercialization obligations set forth in Sections 7.2, 7.3, 7.4 and 7.5 shall apply to such Product regardless of whether another Product is then being developed or commercialized by Astra. ARTICLE VIII PAYMENTS SECTION 8.1. INITIAL LICENSE FEES. Astra has made the following non-refundable payments to Millennium in consideration of the rights granted to Astra under this Agreement: (a) [**] on or before December 20, 1995; (b) [**] on or before December 31, 1997. SECTION 8.2. ADDITIONAL FEES. Astra shall make the following payments to Millennium upon the renewal or termination of the Millennium Research Program, pursuant to Section 2.7 40 47 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. (a) [**] within two (2) months after the conclusion of the third Contract Year as consideration for Millennium providing in the fourth Contract Year an average minimum of twenty (20) FTE's as reviewed and verified by the Joint Management Team on a quarterly basis; (b) [**] within two (2) months after the conclusion of the fourth Contract Year as consideration for Millennium providing in the fifth Contract Year an average minimum of twenty (20) FTE's as reviewed and verified by the Joint Management Team on a quarterly basis; (c) [**] within two (2) months after the conclusion of the fifth Contract Year if, pursuant to Section 2.7(c), the Millennium Research Program is terminated at Astra's election at the end of the fifth Contract Year; [**] of the [**] to this [**] except that such [**] for any [**] to [**] of the [**] otherwise payable to [**]. SECTION 8.3. RESEARCH FUNDING. (a) FTE SUPPORT. In support of research and development to be conducted by Millennium pursuant to this Agreement, Astra will make the following payments to Millennium: (i) To fund the Millennium Research Program, Astra shall pay to Millennium an amount equal to the following amounts per FTE: The full-time equivalent rate shall be [**] per FTE (all inclusive) from the Effective Date to December 31, 1996 (the "FTE Rate"). On each January 1 thereafter, the FTE Rate shall be adjusted by an amount equal to the percentage increase or decrease, if any, in the United States Consumer Price Index (or any comparable successor index thereto) from the immediately preceding January 1. (ii) During the first three (3) Contract Years, Millennium shall provide, and Astra shall fund, a minimum (but not more than the number of FTEs actually provided by Millennium) of [**] FTEs for the first Contract Year; [**] FTEs for the second Contract Year; and [**] FTEs for the third Contract Year; it being understood that the number of FTEs actually working on the Millennium Research Program in the first Contract Year will gradually increase as FTEs are hired. 41 48 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. (iii) In accordance with Astra's election, pursuant to Section 2.7(b) and 2.7(c), to extend the term of the Millennium Research Program until the end of the seventh Contract Year, Millennium shall provide, and Astra shall fund, during the fourth through seventh Contract Years, a minimum (but Astra shall not fund more than the number of FTEs actually provided by Millennium) of [**] FTEs for the fourth Contract Year, [**] FTEs for the fifth Contract Year, [**] FTEs for the sixth Contract Year, and [**] for the seventh Contract Year. (iv) The numbers set forth above for FTE employees to be provided by Millennium, and funded by Astra, for research and development from the Effective Date through the end of the Millennium Research Program may be adjusted from time to time by decision of the Joint Management Team, PROVIDED, HOWEVER, that the number of FTEs funded by Astra shall not be below the minimums set forth above, except by mutual agreement of the Parties. (v) Within ten (10) days of the first day of each contract quarter, Astra shall pay to Millennium the total amount due for the upcoming quarter. Within thirty (30) days of the completion of each contract quarter, Millennium shall provide Astra with a written statement setting forth the actual numbers of FTEs provided, and shall provide Astra with a credit for any amounts overpaid by Astra or bill Astra for any amounts underpaid during such contract quarter (except that with respect to the last quarterly payment of the last Contract Year, Millennium shall reimburse Astra for any amounts overpaid by Astra). (vi) If third party collaborative research expenses incurred by Millennium in support of the Millennium Research Program in any Contract Year exceeds an amount equal to [**], then Astra shall reimburse Millennium for such excess collaborative research expenses subject to the approval of the Joint Management Team. (b) RECORDS AND AUDITS. Millennium shall keep complete and accurate records of the latest three (3) years of FTEs. Astra shall have the right annually at Astra's expense to have an independent, certified public accountant, reasonably acceptable to Millennium, review such records in the location(s) where such records are maintained by Millennium upon reasonable notice and during regular business hours for the purposes of verifying FTEs on 42 49 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. an annual basis for which Astra has provided funding pursuant to the Millennium Research Program. Results of such review shall be made available to both Parties. If the review reflects an overpayment of funding to Millennium, such overpayment shall be promptly remitted to Astra. If the overpayment is equal to or greater than five percent (5%) of the actual annual funding amount that was otherwise due, Astra shall be entitled to have Millennium pay all of the costs of such review. SECTION 8.4. MILESTONES. Within thirty (30) days upon the achievement of the following milestones, Astra shall pay to Millennium the specified milestone payments, all of which shall be non-refundable: (a) The sum of [**] for [**] (i) that is [**], or (ii) that is [**] or [**] in the Field for the [**], in each case in the course of the Millennium Research Program; provided that no more than [**] may qualify for this milestone payment until [**]. Upon the identification of each and every [**] or [**], the number of [**] eligible for this milestone payment shall increase by [**]. In the event that, (i) following the receipt by Millennium of a milestone payment with respect to a [**] pursuant to this Section 8.4(a), it is demonstrated that [**] in a disease or condition in the Field, and (ii) as a result of the circumstance described in clause (i) above, [**], if any, with respect to such [**], then [**] of such milestone payment shall be [**] as soon as possible [**] under this Agreement. (b) The sum of [**] for each [**] that is successfully identified. In the event that, (i) following the receipt by Millennium of a milestone payment with respect to a [**] pursuant to this Section 8.4(b), it is demonstrated that a [**] that constitutes [**] of such [**] in a [**] or [**], and (ii) as a result of the circumstance described in clause (i) above, [**], if any, with respect to such [**] or such [**], then [**] of such milestone payment shall be [**] as soon as possible [**] under this Agreement. (c) The sum of [**] or each [**] that is successfully identified. In the event that, (i) following the receipt by Millennium of a milestone payment with respect to a [**] pursuant to this Section 8.4(c), it is demonstrated that [**] that constitutes [**] in a [**] or [**], and (ii) as a result of the circumstance described in clause (i) above, [**], if any, with respect to such [**], then [**] of such milestone payment shall be [**] as soon as possible [**] under this Agreement. 43 50 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. (d) The sum of [**] for each [**] based on a [**]. (e) The sum of [**] of either (i) [**] or (ii) [**], including [**] but excluding [**]; PROVIDED, that each [**] and each [**] shall be counted only once and shall be counted in the order in which it is identified. For the purposes of clarity, should the order of identification be [**], then [**], then [**], such sequence of identification shall be considered the identification of [**]. (f) The sum of [**] for each [**] that is successfully identified from a [**] arising from a [**]. (g) The sum of [**] for each [**] that is successfully identified from a [**] arising from a [**] whether or not it is a [**], but excluding a [**]. (h) Upon the [**] or its equivalent in the first Major Market Country, the sum of [**] for each Product. (i) Upon the [**] or its equivalent in the first Major Market Country, the sum of [**] for each Product. (j) Upon the [**] or its equivalent in the first Major Market Country, the sum of [**] for each Product. (k) Upon filing of a [**] or its equivalent in the first Major Market (l) Upon approval of a [**] or its equivalent in the first Major Market Country, the sum of [**] for each Product. Notwithstanding the foregoing to the contrary, (i) [**] payment shall be made pursuant to [**] for [**] with respect to which [**] has [**] pursuant to such Subsection, and (ii) the [**] to be made pursuant to [**] shall be [**] of the amount specified in such Subsection with respect to a Product that (A) comprises a [**] or a [**] or a [**] that corresponds to a [**] or [**] or a [**], as the case may be, that [**] with respect to which [**] pursuant to such Subsection, or (B) comprises a [**] based upon, or a [**], a [**] that is [**] with respect to which [**] pursuant to such Subsection. If Astra begins the development of a Product and later ceases development of said Product due to [**] or the Product is [**], then any milestone payments made 44 51 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. under [**] shall be [**] which [**] that (1) [**] of the [**] as contained in the [**], (2) [**] or a [**] that corresponds to the [**] or the [**] or a [**], as the case may be, contained in the [**], or (3) [**] based upon, or a [**], the [**] contained in the original Product. SECTION 8.5. ROYALTY PAYMENTS TO MILLENNIUM ON PRODUCTS. (a) Astra shall pay to Millennium royalties on Products that comprise a Program Small Molecule Drug or a Related Small Molecule Drug or a Program Peptido Mimetic Drug or a Related Peptido Mimetic Drug or a Program Antisense Drug or a Related Antisense Drug or a Program Protein Drug or a Program Analog Protein Drug or a Program Protein Mimic Drug. The royalties on each Product shall be payable initially at the rate of [**] of Net Sales, PROVIDED THAT, at such time as Net Sales for a Product in any calendar year exceed [**] then the royalty rate on all Net Sales of such Product in such calendar year (retroactive to the beginning of such year) and for all future calendar years shall be [**] of Net Sales of such Product, and PROVIDED FURTHER, that at such time as Net Sales for a Product in any calendar year exceed [**] then the royalty rate on all Net Sales of such Product in such calendar year (retroactive to the beginning of such year) and for all future calendar years shall be [**] of Net Sales of such Product. (b) Astra shall pay to Millennium royalties of [**] of Net Sales on Products that comprise a Modified Drug. Notwithstanding the provisions of paragraphs (a) and (b) above, the royalty rates set forth in this Section 8.5 shall be reduced, on a country-by-country basis, by [**] on Net Sales of any Product [**]. For the purposes of this Article VIII, a Product is afforded "[**]," in the circumstance where, on a country-by-country basis, (i) the [**] contained within such Product is [**], or (ii) such Product [**]. SECTION 8.6. LENGTH OF ROYALTY PAYMENTS. The royalties payable under Sections 8.5 shall be paid on a country-by-country basis from the date of First Commercial Sale for each Product until the termination of any Legal Exclusivity afforded such Product in such country, or until [**] years after such First Commercial Sale, whichever is longer. Notwithstanding the foregoing, all obligations of Astra to pay royalties to Millennium on the Net Sales of Products pursuant to Section 8.5 shall [**]. 45 52 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. SECTION 8.7. ROYALTIES PAYABLE ONLY ONCE. The obligation to pay royalties is imposed only once with respect to the same unit of Product. Except as specifically provided in this Agreement, it is understood and agreed that there shall be no deductions from the royalties payable hereunder. SECTION 8.8. OTHER PRODUCTS. Astra shall have no obligations to Millennium to make any milestone payments or royalty payment for any Other Products. SECTION 8.9. PAYMENT OBLIGATIONS TO THIRD PARTIES. Each Party shall be solely responsible for fulfilling any of its past or future payment obligations arising from such Party's agreements or other arrangements with third parties. SECTION 8.10. BANKRUPTCY. In the event that (a) a Millennium Event of Bankruptcy (as defined below) occurs during the term of the Millennium Research Program; AND (b) as a result of the Millennium Event of Bankruptcy, the trustee in bankruptcy rejects or disavows this Agreement, or Millennium fails to comply with its continuing obligations with respect to the conduct of the Research Program, then the Research Program shall be deemed to be terminated, and Astra shall not be obligated to make any additional license fee payment or research funding payments from and after the date of such termination. Furthermore, Astra shall not be obligated to make any milestone or royalty payments relating to (i) Modified Drugs that were not in development under the Research Program at the time of such termination, or (ii) other Products that are not based upon or derived from Candidate Genes, Validated Proteins or Validated Targets identified, discovered or the development of which was undertaken in the course of the Research Program. The foregoing shall not affect, and Astra shall remain obligated to make all applicable [**] relating to, [**] identified, discovered or the development of which was undertaken in the course of the Research Program, and all Products based upon or derived therefrom. As used above, the term "Millennium Event of Bankruptcy" means (a) the appointment of a custodian or receiver for Millennium or any material part of the property of Millennium if such appointment is not terminated or dismissed within ninety (90) days, (b) the institution by Millennium of any proceeding under the United States Bankruptcy Code or any other federal or state bankruptcy, reorganization, receivership, or other similar law affecting the rights of creditors generally or the making by Millennium of a composition or any assignment or trust 46 53 mortgage for the benefit of creditors, or (c) the institution against Millennium of a proceeding under the United States Bankruptcy Code or any other federal or state bankruptcy, reorganization, receivership, or other similar law affecting the rights of creditors generally, which proceeding is not dismissed within ninety (90) days of filing. ARTICLE IX ACCOUNTING SECTION 9.1. ROYALTY REPORTS. Astra shall deliver to Millennium, within sixty (60) days after the end of each calendar quarter, a written accounting of Astra's and its Sublicensees' sales and other consideration received subject to royalty payment due to Millennium for such quarter. Such quarterly reports shall indicate the Net Sales of Products on a country-by-country basis. This obligation shall commence with the first calendar quarter in which there is a Net Sale of a Product by Astra or any of its Sublicensees. SECTION 9.2. DELIVERY OF ROYALTY. When Astra delivers the accounting to Millennium, Astra shall also deliver all royalty payments due to Millennium for the calendar quarter. SECTION 9.3. RECORDS AND AUDITS. Astra shall keep, and shall require its Sublicensees to keep, complete and accurate records of the latest three (3) years of Net Sales. Millennium shall have the right annually at Millennium's expense to have an independent, certified public accountant, reasonably acceptable to Astra, review such records in the location(s) where such records are maintained by Astra or its Sublicensees upon reasonable notice and during regular business hours for the purposes of verifying royalties payable to Millennium and Net Sales. Results of such review shall be made available to both Parties. If the review reflects an underpayment of royalties to Millennium, such underpayment shall be promptly remitted to Millennium. If the underpayment is equal to or greater than five percent (5%) of the royalty amount that was otherwise due, Millennium shall be entitled to have Astra pay all of the costs of such review. SECTION 9.4. CURRENCY OF PAYMENTS. All payments under this Agreement shall be made in United States dollars by wire transfer to such bank account as Millennium may designate from time to time. Any payments due hereunder on Net Sales outside of the United States shall be payable in United States dollars at the rate of exchange of the currency of the country in which the Net Sales are made as published by The Wall Street Journal for the last business day of the calendar quarter for which the royalties are payable. 47 54 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. SECTION 9.5. TAX WITHHOLDING. Astra and Millennium shall use all reasonable and legal efforts to reduce tax withholding on payments made to Millennium hereunder. Notwithstanding such efforts, if the Parties conclude that tax withholdings under the laws of Sweden are required with respect to payments to Millennium under Article VIII, Astra shall withhold the required amount and pay it to the appropriate governmental authority. In such a case, Astra will promptly provide Millennium with original receipts or other evidence sufficient to allow Millennium to obtain the benefits of such tax withholdings. All royalties payable to Millennium hereunder shall be paid by Astra from its Swedish headquarters or the United States. In the event that Astra changes its payment practices or changes the location of its operation and such changes result in increased withholding taxes, Astra shall remit to Millennium an amount, in addition to the royalties otherwise payable, necessary to compensate Millennium in full for the increased withholding taxes. Astra shall not deduct such tax withholdings from payments to Millennium to the extent that Astra is able to utilize the tax credits resulting from such withholdings. ARTICLE X TERM AND TERMINATION SECTION 10.1. TERM. This Agreement becomes effective as of the Effective Date, may be terminated as set forth in this Article X hereof, and otherwise remains in effect until the expiration of the term of Astra's obligation to pay royalties. [**] shall be [**] in the [**] under this Agreement. SECTION 10.2. MATERIAL NON-PERFORMANCE. In the event that either Party (a "Defaulting Party") shall default in any material term, covenant or provision of this Agreement (a "Default"), the other Party (a "Non-Defaulting Party") shall, without unreasonable delay following discovery of such Default, notify the Defaulting Party in writing, and the Parties shall consult with each other in good faith to endeavor to determine whether a Default has occurred and, if so, to agree upon the most effective means to cure such Default and, if necessary, to effect restitution in favor of the Non-Defaulting Party for the consequences of such Default (collectively the "Resolution"). In the event that the Parties agree upon a Resolution with respect to a Monetary Default (as defined below), the Defaulting Party shall pay all amounts required to be paid pursuant to such Resolution within fifteen (15) days of such agreement on the Resolution. Failure to pay all such amounts within such fifteen 48 55 (15) day period shall result, at the election of the Non-Defaulting Party, in the termination of this Agreement. In the event (i) the Parties are unable to agree upon a Resolution, either because they are unable to agree upon whether or not a Default has occurred or because they are unable to agree upon cure or restitution provisions, or (ii) if with respect to a Default which is not a Monetary Default, within ninety (90) days after agreement on a Resolution the Defaulting Party, in the exercise of reasonable diligence shall have been unable to remedy such Default, then in either such event, the Parties agree that the determination of whether a Default has occurred and the remedy of the Non-Defaulting Party with respect to the Default by the Defaulting Party shall be determined by arbitration pursuant to Section 12.2 hereof, and the arbitrators shall, except as provided below, be authorized to fashion such remedy, including equitable relief, which may include termination of this Agreement in whole or in part, as the arbitrators shall determine appropriate, subject to the following provisions: (a) the termination of this Agreement in whole shall only be the remedy of last resort, except as provided in subsection (b); (b) with respect to a Monetary Default, the remedy for such Monetary Default shall be full payment within fifteen (15) days after the determination by the arbitrators of all amounts owed PLUS (i) interest on the unpaid amounts from the due date through the actual payment date at the prime rate of interest as reported in THE WALL STREET JOURNAL, and (ii) the full costs of arbitration, including without limitation the fees and expenses of the arbitrators and of counsel to the Non-Defaulting Party; (c) failure to effect the remedy set forth in subsection (b) within the fifteen (15) day period specified therein shall result, at the election of the Non-Defaulting Party, in the termination of this Agreement; (d) in the event that Millennium is the Defaulting Party with respect to a Default that is not a Monetary Default, the arbitrators shall determine the appropriate reduction, if any, in ongoing milestone and royalty payments to be paid to Millennium, based upon all relevant factors including the nature of the Default, the relative contributions made to the development of Products (as compared with the contributions expected to be made under this Agreement in the absence of such Default), licensing rates prevailing in the industry and such other factors deemed relevant by the arbitrators; (e) other than as provided in subsection (d), in fashioning a remedy, the arbitrators shall not be empowered to modify or alter the provisions of this Agreement. As used herein, the term "Monetary Default" means (i) a Default relating to any payment obligation under this Agreement, or (ii) a failure to fulfill any payment obligation imposed upon a Party as a result of a Resolution, or (iii) a failure to fulfill any payment obligation imposed upon a Party by arbitrators pursuant to arbitration conducted in accordance with the provisions of this Section 10.2 and Section 12.2. SECTION 10.3. RIGHTS UPON TERMINATION FOR DEFAULT. If this Agreement terminates pursuant to Section 10.2 following a Default, (a) the Defaulting Party shall 49 56 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. return to the Non-Defaulting Party all Confidential Information and materials received from the Non-Defaulting Party during the term of the Agreement, (b) the Defaulting Party shall cease all use of the Confidential Information and materials received from the Non-Defaulting Party for any purpose, except that the Defaulting Party may keep a copy of all documents for record keeping purposes only, (c) in the event that the [**], as set forth in [**], and (d) in the event that the [**] under this Agreement shall [**]. Further, in the event that the [**] and at the [**] is developing any Product which comprises a Program Antisense Drug, Related Antisense Drug, Program Protein Drug, Program Analog Protein Drug or Program Mimic Drug, then [**] all data and information which it has developed prior to [**] which can reasonably be viewed as necessary or useful to obtain governmental regulatory approvals of such Product and, subject to any agreements with third parties, Millennium and its licensees shall be entitled to use such information freely; PROVIDED, HOWEVER, [**] hereunder shall not extend to confidential information of [**] relating to technologies and methods for manufacturing and/or formulating the [**]. SECTION 10.4. RESIDUAL RIGHTS. Upon expiration or early termination of this Agreement, except as specifically provided herein to the contrary, all rights and obligations of the Parties shall cease, except as follows: (a) Obligations to pay royalties and other sums accruing hereunder up to the date of expiration or termination; and (b) The right to complete the manufacture and sale of Products, which qualify as "work in process" under generally accepted cost accounting standards or which are in stock at the date of expiration or termination, and the obligation to pay royalties on Net Sales of such Products; and (c) The obligations, if any, to make milestone payments for milestones as achieved and to pay royalties with respect to Products, as determined pursuant to Section 10.2; and (d) The obligations regarding confidentiality as set forth in Article IV; and (e) All obligations for record keeping and accounting reports; and (f) A Party's right to inspect books and records of the other Party as set forth in Article XIII and Article IX, which right shall continue in full force 50 57 and effect for three (3) years following the expiration of such other Party's obligation under this Agreement to keep such books and records; and (g) Obligations of defense and indemnity, which obligations shall continue in full force and effect for an unlimited period; and (h) Obligations set forth in Section 6.7 and Section 6.10, but only with respect to those causes of action that accrued prior to such expiration or termination; and (i) Any cause of action or claim of Millennium or Astra accrued or to accrue because of any breach or default by the other Party hereunder; and (j) All other terms, provisions, representations, rights and obligations contained in this Agreement that by their sense and context are intended to survive until performance thereof by either or both Parties. ARTICLE XI PRODUCT LIABILITY INDEMNIFICATION Astra agrees to defend Millennium at Astra's cost and expense, and will indemnify and hold Millennium and its directors, officers, employees and agents (the "Millennium Indemnified Parties") harmless from and against any losses, costs, damages, fees or expenses arising out of any claim relating to personal injury from the development, manufacture, use, sale or other disposition of any Product by Astra or its Sublicensees (except for products developed, manufactured, used or sold by Millennium or its licensees (other than Astra)). In the event of any such claim against the Millennium Indemnified Parties by any Party, Millennium shall promptly notify Astra in writing of the claim and Astra shall manage and control, at its sole expense, the defense of the claim and its settlement. The Millennium Indemnified Parties shall cooperate with Astra and may, at their option and expense, be represented in any such action or proceeding. Astra shall not be liable for any litigation costs or expenses incurred by the Millennium Indemnified Parties without Astra's prior written authorization. In addition, Astra shall not be responsible for the indemnification of any Millennium Indemnified Party arising from any negligent or intentional acts by such Party. 51 58 ARTICLE XII GOOD FAITH NEGOTIATION/DISPUTE RESOLUTION SECTION 12.1. GENERAL. In acknowledgment of the benefit to both Parties to resolve differences quickly and efficiently with as little disruption of each Parties' business as possible, the Parties agree to abide by the following provisions in connection with any dispute that should arise between the Parties with respect to any matter relating to this Agreement, including any questions regarding the existence, validity or termination thereof. SECTION 12.2. DISPUTE RESOLUTION PROCESS. (a) SELECTION OF ARBITRATORS. In the event that the Parties are unable to resolve a dispute within thirty (30) days after commencement of good faith negotiations between the Parties, either Party may submit the matter to binding arbitration in accordance with the procedures set forth in this Section 12.2. If a Party intends to commence arbitration to resolve a dispute, such Party shall provide written notice to the other Party of such intention, and shall designate one arbitrator. Within ten (10) days of receipt of such notice, the other Party shall designate in writing a second arbitrator. The two arbitrators so designated shall, within ten (10) days thereafter, designate a third arbitrator. The arbitrators so designated shall not be employees, consultants, officers, directors or shareholders of or otherwise associated with either Party. The arbitration shall be conducted in accordance with the then rules of commercial arbitration of and before the American Arbitration Association in New York, New York. The language of such arbitration shall be English and all notices and written submissions provided in such proceeding shall be in English. (b) WRITTEN PROPOSALS. Within fifteen (15) days after the designation of the third arbitrator, the arbitrators and the Parties shall meet at which time each Party shall be required to set forth in writing the issues which need to be resolved and a proposed ruling on each such issue. Written submissions shall be limited to thirty (30) pages of text (not including exhibits which may include copies of agreements, or extracts from books and records, but including testimony affidavits). (c) HEARING. The arbitrators shall set a date for a hearing, which shall be no later than twenty (20) days after the submission of written proposals, to discuss each of the issues identified by the Parties. Each Party shall have the right to be represented by counsel. The arbitrators shall have sole discretion with regard to the admissibility of any evidence. Unless 52 59 otherwise determined by unanimous agreement of the arbitrators the hearing shall be concluded in one (1) day. (d) RULING. The arbitrators shall use their best efforts to rule on each disputed issue within twenty (20) days after the completion of the hearings described in subsection (c) above. The arbitrators' ruling shall be, in the absence of fraud or manifest error, binding and conclusive upon both Parties and may be enforced in a court of competent jurisdiction. Other than as provided in Section 10.2(d), in fashioning a remedy, the arbitrators shall not be empowered to modify or alter the provisions of this Agreement. The arbitrators may not award multiple, punitive or exemplary damages. SECTION 12.3. ARBITRATION COSTS. The arbitrators shall be paid a reasonable fee plus expenses, which fees and expenses shall be paid as designated by the arbitrators or if the arbitrators do not so designate such costs shall be shared equally by the Parties. ARTICLE XIII GOVERNING LAW This Agreement shall be construed and the respective rights of the Parties hereto determined according to the substantive laws of the State of Delaware notwithstanding the provisions governing conflict of laws under such Delaware law to the contrary. ARTICLE XIV ASSIGNMENT Neither Party may assign this Agreement in whole or in part without the consent of the other, except if such assignment occurs in connection with the sale or transfer of all or substantially all of the business and assets of Millennium or Astra. ARTICLE XV AMENDMENTS This Agreement constitutes the entire agreement between the Parties and supersedes all previous arrangements whether written or oral. Any amendment or modification to this Agreement shall be made in writing signed by both Parties. 53 60 ARTICLE XVI NOTICES All notices, instructions and other communications hereunder or in connection herewith shall be in writing and shall be (i) delivered personally, (ii) sent by registered or certified mail, return receipt requested, postage prepaid, (iii) sent via a reputable international courtier service, or (ii) sent by facsimile transmission, in each case to an address set forth below. Any such notice, instruction or communication shall be deemed to have been delivered upon receipt if delivered by hand, five business days after it is sent by registered or certified mail, return receipt requested, postage prepaid, three business days after it is sent via a reputable international courier service, or when transmitted with electronic confirmation of receipt, if transmitted by facsimile (if such transmission is on a business day; otherwise, on the next business day following such transmission). Notices to Millennium shall be addressed to: Millennium Pharmaceuticals, Inc. 640 Memorial Drive Cambridge, Massachusetts 02139-4815 Attention: Chief Business Officer Facsimile No.: (617) 621-0264 with a copy to: Attention: Legal Department Notices to Astra shall be addressed to: Astra AB S-151 85 Sodertalje, Sweden Attention: President Facsimile No.: 011-468-553-29000 with a copy to: Attention: General Counsel Facsimile No.: 011-468-553-28812 Either Party may change its address by giving notice to the other Party in the manner herein provided. 54 61 Confidential Materials omitted and filed separately with the Securities and Exchange Commission. Asterisks denote omissions. ARTICLE XVII FORCE MAJEURE No failure or omission by the Parties hereto in the performance of any obligation of this Agreement shall be deemed a breach of this Agreement or create any liability if the same shall arise from any cause or causes beyond the control of the Parties, including, but not limited to, the following: acts of God; acts or omissions of any government; any rules, regulations or orders issued by any governmental authority or by any officer, department, agency or instrumentality thereof; fire; storm; flood; earthquake; accident; war; rebellion; insurrection; riot; and invasion and provided that such failure or omission resulting from one of the above causes is cured as soon as is practicable after the occurrence of one or more of the above-mentioned causes. ARTICLE XVIII REPRESENTATIONS AND WARRANTIES SECTION 18.1. REPRESENTATION OF AUTHORITY. Millennium and Astra each represents and warrants to the other that as of the effective date of this Agreement it has full right, power and authority to enter into this Agreement and to provide the Know-How under Article III hereof, including the biological materials, subject to the limitations set forth in this Section 18.1. Millennium represents and warrants to Astra that it (i) is the owner or licensee, as the case may be, of the Millennium Field Patent Rights, Millennium Field Know-How, Millennium Core Technology Know-How, and Millennium Core Technology, and (ii) has the right to grant to Astra the licenses and sublicenses granted pursuant to this Agreement. Millennium has furnished Astra with (a) a copy of all patent applications comprising Millennium Field Patent Rights and (b) a summary of all license agreements and options pertaining to the Millennium Field Patent Rights and Millennium Field Know-How existing as of the Effective Date, and by its execution and delivery of this Agreement, Astra agrees to be bound by the terms of such agreements to the extent required thereby. Millennium further represents that it will not, without the prior written consent of Astra, [**]. SECTION 18.2. OUTSTANDING AGREEMENTS. APPENDIX B, which shall be amended by Millennium from time to time consistent with the provisions of this Agreement, 55 62 lists all material outstanding options, licenses or agreements of any kind between Millennium and any third party relating to Millennium Field Patent Rights and Millennium Field Know-How and Millennium Core Technology Know-How, Millennium Core Technology Patent Rights as of the Effective Date. SECTION 18.3. KNOWLEDGE OF PENDING OR THREATENED LITIGATION. Each Party represents and warrants to the other that it is not aware of any pending or threatened litigation (and has not received any communication) which alleges that such Party's activities in the Field to date have violated, or by conducting its business as currently proposed under the Research Program contemplated herein would violate, any of the intellectual property rights of any other person. To the best of each Party's knowledge, there is no material unauthorized use, infringement or misappropriation of any of its intellectual property rights licensed hereunder to the other Party. SECTION 18.4. EMPLOYEE OBLIGATIONS. Each Party represents and warrants that all of its employees, officers, and consultants have executed agreements or have existing obligations under law requiring, in the case of employees and officers, assignment to such Party of all inventions made during the course of and as the result of their association with such Party and obligating the individual to maintain as confidential such Party's Confidential Information as well as confidential information of a third party which such Party may receive, to the extent required to support such Party's obligations under this Agreement. SECTION 18.5. FULL DISCLOSURE. Each Party has disclosed to the other in good faith all material information such Party believes is relevant to the subject matter of this Agreement, and to such Party's ability to observe and perform its obligations hereunder. ARTICLE XIX PUBLIC ANNOUNCEMENTS Any announcements or similar publicity with respect to the execution of this Agreement shall be agreed between the Parties in advance of such announcement. Astra understands that this Agreement and Millennium's efforts hereunder are likely to be of significant interest to investors, analysts and others, and Millennium therefore intends to make such public announcements with respect thereto. Millennium agrees that any such announcement will not contain confidential business or technical information and, if disclosure of confidential business or technical information is required by law or regulation, will make reasonable efforts to minimize such disclosure and obtain confidential treatment for any such information which is disclosed to a governmental agency or group. Each Party agrees to provide to the other Party a copy of any public announcement as soon as reasonably 56 63 practicable under the circumstances prior to its scheduled release. Each Party shall have the right to expeditiously review and recommend changes to any announcement regarding this Agreement or any studies carried out under this Agreement. Except as otherwise required by law, the Party whose press release has been reviewed shall remove any information the reviewing Party reasonably deems to be inappropriate for disclosure. ARTICLE XX ADDITIONAL AGREEMENTS SECTION 20.1. INDEPENDENT CONTRACTORS. It is understood and agreed that the relationship between the Parties hereunder is that of independent contractors and that nothing in this Agreement shall be construed as authorization for either Astra or Millennium to act as agent for the other. Members of the Joint Management Team shall be, and shall remain, employees of Millennium or Astra, as the case may be. Neither party shall incur any liability for any act or failure to act by members of the Joint Management Team who are employees of the other party. SECTION 20.2. CONSENTS NOT UNREASONABLY WITHHELD. Whenever provision is made in this Agreement for either Party to secure the consent or approval of the other, that consent or approval shall not unreasonably be withheld, and whenever in this Agreement provisions are made for one Party to object to or disapprove a matter, such objection or disapproval shall not unreasonably be exercised. SECTION 20.3. NO STRICT CONSTRUCTION. This Agreement has been prepared jointly and shall not be strictly construed against either Party. SECTION 20.4. HEADINGS. The captions or headings of the Sections or other subdivisions hereof are inserted only as a matter of convenience or for reference and shall have no effect on the meaning of the provisions hereof. SECTION 20.5. SEVERANCE OF CLAUSES. Each Party agrees that, should any provision of this Agreement be determined by a court of competent jurisdiction to violate or contravene any applicable law or policy, such provision will be severed or modified by the court to the extent necessary to comply with the applicable law or policy, and such modified provision and the remainder of the provisions hereof will continue in full force and effect. SECTION 20.6. NO WAIVER. The waiver of a breach hereunder may be effected only by a writing signed by the waiving Party and shall not constitute a waiver of any other breach. 57 64 SECTION 20.7. CHANGE IN CONTROL. (a) In the event of the occurrence of a Change of Control (as defined below) of Astra, Millennium shall have the right, at its election, to provide written notice to Astra (or to the acquiring party) requiring that Astra and the acquiring party indicate to Millennium in writing, within thirty (30) days after receipt of Millennium's notice, that Astra and the acquiring party confirm this Agreement and agree to the continued performance of all obligations of Astra under this Agreement. If Astra and the acquiring party fail to so confirm and agree in writing within such thirty (30) day period, Millennium shall have the right to terminate this Agreement immediately upon providing written notice thereof to Astra. (b) In the event of the occurrence of a Change of Control (as defined below) of Millennium, Astra shall have the right, at its election, to provide written notice to Millennium (or to the acquiring party) requiring that Millennium and the acquiring party indicate to Astra in writing, within thirty (30) days after receipt of Astra's notice, that Millennium and the acquiring party confirm this Agreement and agree to the continued performance of all obligations of Millennium under this Agreement. If Millennium and the acquiring party fail to so confirm and agree in writing within such thirty (30) day period, Astra shall have the right to terminate this Agreement immediately upon providing written notice thereof to Millennium. (c) As used in this Section 20.7, the term "Change of Control" shall mean (i) a merger or consolidation of Astra or Millennium, as the case may be, which results in the voting securities of Astra or Millennium outstanding immediately prior thereto ceasing to represent at least fifty percent (50%) of the combined voting power of the surviving entity immediately after such merger or consolidation; (ii) the sale of all or substantially all of the assets of Astra or Millennium, as the case may be; or (iii) any "person," as such term is used in Sections 13(d) and 14(d) of the Securities Exchange Act of 1934, as amended (the "Exchange Act") (other than Astra or Millennium, as the case may be, any trustee or other fiduciary holding securities under an employee benefit plan of Astra or Millennium, as the case may be, or any corporation owned directly or indirectly by the stockholders of Astra or Millennium, as the case may be, in substantially the same proportion as their ownership of stock of Astra or Millennium, as the case may be), together with any of such person's "affiliates" or "associates," as such terms are used in the Exchange Act, becoming the beneficial owner of fifty percent (50%) or more of the combined voting power of the outstanding securities of Astra or Millennium, as the case may be. 58 65 SECTION 20.8 ENTIRE AGREEMENT. This Agreement and the Appendices attached hereto (which Appendices are deemed to be a part of this Agreement) represent the full understanding of the Parties with respect to the subject matter hereof and supersede all prior understandings and writings relating thereto, including the terms of the Original Agreement, and the provisions of the Original Agreement are hereby terminated and of no further force and effect. No waiver, alteration or modification of any of the provisions hereof shall be binding unless made in writing and signed by the Parties. IN WITNESS WHEREOF, this Agreement is executed this 17th day of December, 1998, to be effective as of the Effective Date. MILLENNIUM PHARMACEUTICALS, ASTRA AB INC. /s/ Hakan Mogren /s/ Mark J. Levin - ------------------------------ -------------------------------- Hakan Mogren Mark J. Levin President and Chief Executive Officer Chief Executive Officer - ------------------------------ -------------------------------- Title Title December 17, 1998 December 14, 1998 - ------------------------------ -------------------------------- Date Date 59 66 APPENDIX A TO RESEARCH AND LICENSE AGREEMENT BY AND BETWEEN ASTRA AB AND MILLENNIUM PHARMACEUTICALS, INC. DATED AS OF DECEMBER 9, 1995 RESEARCH PROGRAM PLAN 60 67 APPENDIX B TO RESEARCH AND LICENSE AGREEMENT BY AND BETWEEN ASTRA AB AND MILLENNIUM PHARMACEUTICALS, INC. DATED AS OF DECEMBER 9, 1995 THIRD PARTY AGREEMENTS WITH MILLENNIUM A. Third Party Agreements relating to Millennium Field Know-How Sponsored Research and Collaboration Agreement between Millennium Pharmaceuticals, Inc. and The General Hospital Corporation (Dr. Bernard Kinane), dated July 15, 1995. Agreement between Millennium Pharmaceuticals, Inc. and Megathlin, Sigler and Chilmonczyk MDPA, dated June 15, 1995. Sponsored Research and Collaboration Agreement between Millennium Pharmaceuticals, Inc. and the Brigham and Women's Hospital (Dr. Ziping Xu), dated September 1, 1994. Cooperative Research and Development Agreement (CRADA) between the National Institutes of Health (Dr. William Paul) and Millennium Pharmaceuticals, Inc., dated May 31, 1995. B. Third Party Agreements relating to Millennium Core Technology Know-How License Agreement between the Dana-Farber Cancer Institute, Inc. and Millennium Pharmaceuticals, Inc., dated May 15, 1995. 61 68 APPENDIX C TO RESEARCH AND LICENSE AGREEMENT BY AND BETWEEN ASTRA AB AND MILLENNIUM PHARMACEUTICALS, INC. SMALL MOLECULE PROCESS FLOW SCHEDULE Stage I. Gene Discovery and Expression Analysis -- identification of: Pre- Candidate Gene Stage II. Validations Studies -- identification of: Candidate Gene or Genetics Studies -- identification of: Genetics Candidate Gene Stage III. Research Assay Development -- identification of: Validated Target Stage IV. Small Molecule High Throughput Screening -- identification of: Hit Stage V. Exploratory Chemistry -- identification of: Lead Stage VI. Medicinal Chemistry -- identification of: Candidate Drug 62 EX-10.57 5 SIXTH AMENDMENT TO LEASE 1 Exhibit 10.57 SIXTH AMENDMENT TO LEASE THIS SIXTH AMENDMENT TO LEASE ("Amendment") is made as of the 29th day of January, 1999 by and between MASSACHUSETTS INSTITUTE OF TECHNOLOGY, a Massachusetts educational corporation with an address of 238 Main Street, Cambridge, Massachusetts 02142 ("Lessor"), and MILLENNIUM PHARMACEUTICALS, INC., a Delaware corporation with an address of 640 Memorial Drive, Cambridge, Massachusetts 02139 ("Lessee"). Reference is made to a lease dated August 26, 1993 by and between Lessor and Lessee, as amended by amendments dated as of May 18, 1994, January 9, 1996, June 12, 1996, March 1, 1997 and June 19, 1997 (collectively, the "Lease"), concerning certain premises located at 640 Memorial Drive, Cambridge, Massachusetts, as more particularly described in the Lease. A Notice of Lease was filed with the Middlesex Southern Registry District of the Land Court on March 2, 1994 as Document No. 939638, and noted on Certificate of Title No. 89497, as amended. Capitalized terms used in this Amendment which are defined in the Lease and not otherwise defined herein shall have the same meaning in this Amendment as in the Lease. Lessee desires (i) to lease approximately 75,450 square feet of rentable area on the first and second floors of the Building as shown on the plans attached hereto, collectively, as Exhibit I, currently occupied by Lifeline Systems, Inc. ("Lifeline") (the "Additional Expansion Premises") and (ii) to expand the Basement Space to include approximately 8,861 additional square feet of rentable area approximately in the location shown on the plan attached hereto as Exhibit II. Lessor is willing so to lease to Lessee the space on the first and second floors of the Building and such additional Basement Space, on the terms and conditions set forth in this Amendment. FOR GOOD AND VALUABLE CONSIDERATION, the receipt and legal sufficiency of which are hereby acknowledged, Lessor and Lessee hereby agree to amend the Lease as follows: 1. Definitions. For purposes of the Lease, the following terms shall have the meaning set forth opposite them: "Area A" shall mean the portion of the Additional Expansion Premises marked as "Area A" on Exhibit I, containing 51,353 square feet of rentable area. "Area B" shall mean the portion of the Additional Expansion Premises marked as "Area B" on Exhibit I, containing 24,097 square feet of rentable area. "Area A Commencement Date" shall mean the date on which Lessor delivers Area A to Lessee, free of occupants but otherwise in the condition in which such space is redelivered to Lessor by Lifeline, which date shall be 2 fifteen (15) days after Lifeline vacates Area A and delivers possession thereof to Lessor. "Area B Commencement Date" shall mean the date on which Lessor delivers Area B to Lessee, free of occupants but otherwise in the condition in which such space is redelivered to Lessor by Lifeline, which date shall be fifteen (15) days after Lifeline vacates Area B and delivers possession thereof to Lessor. "Basement Space" shall mean, from and after the Second Additional Basement Space Commencement Date, collectively the Basement Space, as that term was amended and defined in the Lease prior to this Amendment, together with the Second Additional Basement Space. "Office Tenant Improvement Costs" shall mean the actual out-of-pocket costs and expenses paid by Lessee to third parties in connection with the construction of alterations or improvements to the Additional Expansion Premises to prepare the same for office use by Lessee, which alterations and improvements are intended to become part of the Building and are not to be removed by Lessee. As an example but not in limitation of the foregoing, there shall be excluded from Office Tenant Improvement Costs (a) all costs and expenses paid in connection with the construction of alterations or improvements to the Additional Expansion Premises to prepare the same for any use by Lessee other than office use (including, without limitation, laboratory, research or manufacturing use), (b) all costs and expenses paid in connection with the Second Additional Basement Space, and (c) all furniture costs. For purposes of the Lease, in no event shall Office Tenant Improvement Costs exceed $17.50 per square foot of rentable area of the Additional Expansion Premises leased by Lessee hereunder. "Second Additional Basement Space" shall mean that portion of the basement floor of the Building containing approximately 8,861 square feet of rentable area shown cross-hatched on the plan attached hereto as Exhibit II. "Second Additional Basement Space Commencement Date" shall mean the earlier of (i) the date on which the Second Additional Basement Space is ready for occupancy by Lessee, or (ii) February 15, 1999. "Unamortized Office Tenant Improvement Amount" shall mean, as of the date such determination is being made, the remaining unamortized portion of Lessee's Office Tenant Improvement Costs, amortized on a straight line basis over a period of nine (9) years commencing on the Area A Commencement Date. 2 3 2. Delivery of Additional Expansion Premises to Lessee. (a) Effective as of the Area A Commencement Date, Area A shall be deemed to be part of the Premises for all purposes of the Lease, without the necessity of any further written instrument or other action by the parties, and all rights and obligations of the parties under the Lease with respect to the Premises shall apply equally to Area A. It is the current expectation of Lessor and Lessee that the Area A Commencement Date will occur between February 1, 1999 and March 1, 1999. Lessee hereby acknowledges that Lifeline has given notice that it intends to vacate Area A on or about January 31, 1999, so the anticipated Area A Commencement Date is February 15, 1999. From and after the date on which Lifeline vacates Area A, and while Lifeline is removing its property therefrom, until the Area A Commencement Date, Lessee shall have the right to enter upon Area A to commence preparations for its occupancy thereof, which entry shall be subject to all of the terms of the Lease other than the obligation to pay Rent on account of Area A. Lessee hereby agrees that any delay in the construction of the temporary demising partition separating Area A from Area B will not delay the Area A Commencement Date hereunder. In the event that, for any reason whatsoever, the Area A Commencement Date has not occurred by March 31, 1999, Lessee shall have the right to terminate its obligation to lease the Additional Expansion Premises by giving written notice to Lessor, which termination shall be effective not less than ten (10) days after the date on which such notice is given to Lessor unless, prior to the expiration of such 10-day period, the Area A Commencement Date occurs. Except as otherwise set forth in clause (Y) below, Lessee's right so to terminate its obligation to lease the Additional Expansion Premises shall be Lessee's sole remedy hereunder or at law or in equity for any such delay in the occurrence of the Area A Commencement Date, and such termination shall not effect Lessee's obligations under the Lease or Lessee's obligations hereunder relating to the Second Additional Basement Space. (b) Effective as of the Area B Commencement Date, Area B shall be deemed to be part of the Premises for all purposes of the Lease, without the necessity of any further written instrument or other action by the parties, and all rights and obligations of the parties under the Lease with respect to the Premises shall apply equally to Area B. It is the current expectation of Lessor and Lessee that the Area B Commencement Date will occur between July 1, 1999 and August 1, 1999. In the "Lifeline Termination Agreement" (defined below), Lessor has required Lifeline to use reasonable efforts to give Lessor and Lessee seven (7) days' advance notice of the date on which it will vacate Area B. From and after the date on which Lifeline vacates Area B, and while Lifeline is removing its property therefrom, until the Area B Commencement Date, Lessee shall have the right to enter upon Area B to commence preparations for its occupancy thereof, which entry shall be subject to all of the terms of the Lease other than the obligation to pay Rent on account of Area B. In the event that, for any reason whatsoever, the 3 4 Area B Commencement Date has not occurred by August 31, 1999, Lessee shall have the right to terminate its obligation to lease Area B only by giving written notice to Lessor, which termination shall be effective not less than ten (10) days after the date on which such notice is given to Lessor unless, prior to the expiration of such 10-day period, the Area B Commencement Date occurs. Except as otherwise set forth in clause (Z) below, Lessee's right so to terminate its obligation to lease Area B shall be Lessee's sole remedy hereunder or at law or in equity for any such delay in the occurrence of the Area B Commencement Date, and such termination shall not effect Lessee's obligations under the Lease or Lessee's obligations hereunder with respect to Area A or the Second Additional Basement Space. (c) Lessee acknowledges that (i) the Additional Expansion Premises are currently occupied by Lifeline pursuant to a lease between Lessor, as lessor, and Lifeline, as lessee (the "Lifeline Lease"), and (ii) contemporaneously with the execution and delivery of this Amendment, Lessor and Lifeline shall execute and deliver an agreement (the "Lifeline Termination Agreement") terminating the Lifeline Lease in phases consistent with the delivery of the Additional Expansion Premises to Lessee as provided in this Amendment. Lessor hereby represents to Lessee that the Lifeline Termination Agreement provides, in part, that: (A) Lessor may, at any time after March 31, 1999, terminate such agreement in its entirety and maintain the Lifeline Lease in full force and effect if Area A is not surrendered and redelivered to Lessor in accordance with the provisions of the Lifeline Termination Agreement by March 31, 1999; (B) Lifeline is required to pay the sum of $7,500.00 per day to Lessor for each day after March 1 until the earlier of (1) the day on which Lifeline surrenders and redelivers Area A to Lessor in accordance with the provisions of the Lifeline Termination Agreement, or (2) the effective date of the termination of the Lifeline Termination Agreement as therein provided; (C) Lessor may, at any time after August 31, 1999, terminate such agreement as to Area B if Area B is not surrendered and redelivered to Lessor in accordance with the provisions of the Lifeline Termination Agreement by August 31, 1999; and (D) Lifeline is required to pay the sum of $7,500.00 per day to Lessor for each day after August 1 until the earlier of (1) the day on which Lifeline surrenders and redelivers Area B to Lessor in accordance with the provisions of the Lifeline Termination Agreement, or (2) the effective date of the termination of the Lifeline Termination Agreement as to Area B as therein provided. 4 5 Lessor hereby agrees with Lessee that: (X) Lessor shall not exercise either of the termination options under the Lifeline Termination Agreement as described in clauses (A) and (C) above within one-hundred twenty (120) days after March 31, 1999 or August 31, 1999 (as the case may be) without the prior written consent of Lessee; provided, however, that after the expiration of such 120-day period from each of such relevant dates Lessor may (but shall not be required to) exercise either of such termination options without the necessity of obtaining Lessee's prior written consent; (Y) Lessor shall make diligent efforts to collect from Lifeline the amounts described in the foregoing clause (B) when due and payable by Lifeline to Lessor (if any), and shall pay over to Lessee, promptly upon Lessor's receipt thereof, all amounts so received by Lessor from Lifeline on account of Lifeline's delay beyond March 1, 1999 in so surrendering and redelivering Area A to Lessor; and (Z) Lessor shall make diligent efforts to collect from Lifeline the amounts described in the foregoing clause (D) when due and payable by Lifeline to Lessor (if any), and shall pay over to Lessee, promptly upon Lessor's receipt thereof, all amounts so received by Lessor from Lifeline on account of Lifeline's delay beyond August 1, 1999 in so surrendering and redelivering Area B to Lessor. (d) Effective as of the Second Additional Basement Space Commencement Date, the definition of "Basement Space" set forth in the Lease shall be deemed to be amended to include the Second Additional Basement Space. It is the mutual intention of Lessee and Lessor that the Second Additional Basement Space shall be deemed to be part of both (i) the Basement Space, and (ii) the Premises, for all purposes of the Lease except as otherwise expressly provided in this Amendment, and all rights and obligations of the parties hereunder with respect to the Basement Space and the Premises shall apply equally to the Second Additional Basement Space. Notwithstanding the foregoing, (i) the area of the Second Additional Basement Space shall not be included (a) in the rentable area of the Premises for determining "Lessee's Share" pursuant to Section 5.1 of the Lease, or (b) in determining the number of parking spaces to which Lessee is entitled under Section 9.0 of the Lease; (ii) the Second Additional Basement Space shall be included in the Premises for purposes of Section 13.0 of the Lease; and (iii) the Second Additional Basement Space shall not be included in the Premises for purposes of the "Work Letter" attached to the Lease as Exhibit C. 5 6 (e) Notwithstanding the foregoing, upon the request of either party the other party shall promptly execute and deliver a written instrument setting forth the actual Area A Commencement Date, the actual Area B Commencement Date and the actual Second Additional Basement Space Commencement Date after such dates have occurred. (f) During the time period between the Area A Commencement Date and the Area B Commencement Date, Lessee shall provide to Lifeline access to and use of the loading dock located within the Premises in common with Lessee. (g) In connection with the expiration or termination of the Lease, (i) Lessee shall not be required to remove from the Additional Expansion Premises customary office improvements made thereto by Lifeline or by Lessee, and (ii) Lessee shall not be required to remove any animal storage facility improvements made by Lessee in or to the Second Additional Basement Space. 3. Term. (a) Notwithstanding anything to the contrary contained in the Lease, the Term of the Lease with respect to Area A shall commence on the Area A Commencement Date, and shall expire on the last day of the Term as provided in the Lease, unless the Term is sooner terminated as provided in the Lease. (b) Notwithstanding anything to the contrary contained in the Lease, the Term of the Lease with respect to Area B shall commence on the Area B Commencement Date, and shall expire on the last day of the Term as provided in the Lease, unless the Term is sooner terminated as provided in the Lease. (c) Notwithstanding anything to the contrary contained in the Lease, the Term of the Lease with respect to the Second Additional Basement Space shall commence on the Second Additional Basement Space Commencement Date, and shall expire on the last day of the Term as provided in the Lease, unless the Term is sooner terminated as provided in the Lease. (d) Notwithstanding anything to the contrary contained in the Lease or in this Amendment, (1) Lessee may not exercise any Extension Option with respect to a floor of the Additional Expansion Premises which the named Lessee (or a permitted sublessee or assignee of the type described in Section 8(j) of the Lease) is not itself actually occupying in full as of both the date on which Lessee purports to exercise an Extension Option and the first day of the corresponding Extension Term, and (2) Lessee may not exercise any Extension Option with respect to the Additional Expansion Premises unless Lessee simultaneously exercises, in accordance with the provisions of the 6 7 Lease, the same Extension Option with respect to all other portions of the Premises. 4. Rent. (a) Lessee shall pay Basic Rent on account of the Additional Expansion Premises as follows: (i) for each Lease Year in the Initial Term, commencing on the Area A Commencement Date (with respect to Area A) and on the Area B Commencement Date (with respect to Area B), $19.65 per square foot of rentable area; (ii) for each Lease Year in the first Extension Term (if Lessee exercises the first Extension Option in accordance with the requirements of the Lease), an amount equal to one hundred percent (100%) of the Fair Market Rent thereof less the Unamortized Office Tenant Improvements Amount, but in no event will Basic Rent be less than $19.65 per square foot of rentable area; and (iii) for each Lease Year in the second Extension Term (if Lessee exercises the second Extension Option in accordance with the requirements of the Lease), an amount equal to one hundred percent (100%) of the Fair Market Rent thereof. Such amount shall be paid in equal monthly installments in the manner and at the times provided in the Lease for the payment of Basic Rent. (b) Lessee shall pay Basement Rent on account of the Second Additional Basement Space as follows: (i) for each Lease Year in the Initial Term, commencing on the Second Additional Basement Space Commencement Date, $16.00 per square foot of rentable area; and (ii) for each Lease Year in an Extension Term (if Lessee exercises an Extension Option in accordance with the requirements of the Lease), an amount equal to (A) for each Lease Year in the first Extension Term, $16.00 per square foot of rentable area increased by three (3%) percent per Lease Year in the Initial Term, and (B) for each Lease Year in the second Extension Term, the Basement Rent payable per Lease Year during the first Extension Term increased by three (3%) percent per Lease Year in the first Extension Term. Such amount shall be paid in equal monthly installments in the same manner and at the same times as provided in the Lease with respect to Basic Rent. 7 8 In addition to Basement Rent, Lessee shall pay to Lessor, as Additional Rent, in connection with the Second Additional Basement Space, all other fees and charges provided for (i) in the Lease with respect to the Basement Space or Additional Basement Space, or (ii) in this Amendment. 5. Lessee's Share. From and after the Area A Commencement Date (and assuming that the Area B Commencement Date has not then occurred), Lessee's Share shall be 66.54%. From and after the Area B Commencement Date (and assuming that the Area A Commencement Date has occurred previously), Lessee's Share shall be 79.78%. 6. Electricity. Electrical consumption in the Additional Expansion Premises shall be measured by a separate electric meter. Lessee shall be solely responsible for timely making all payments for electrical service directly to the utility company providing electrical service to the Building. Lessor shall have no obligation with respect to any such payment. 7. Permitted Use. (a) The Additional Expansion Premises shall be used only for the Permitted Uses applicable to the portions of the Premises other than the Basement Space as set forth in the Lease, (b) The Second Additional Basement Space shall be used solely for an animal storage facility and for general storage by Lessee, and for no other purpose. Lessor makes no representation or warranty of any type concerning the permissibility of such use under applicable Legal Requirements or the suitability of the Second Additional Basement Space for such use. In addition to, and not in limitation of, the provisions of the Lease relating to Lessee's use of the Premises, Lessee hereby agrees to comply with all Legal Requirements applicable to Lessee's use of the Second Additional Basement Space and not to permit the emission of any objectionable noise or odors from the Second Additional Basement Space. Lessee shall be solely responsible, at its sole cost and expense, for making such alterations, additions and improvements to any animal storage facilities in the Basement Space as may from time to time (i) be required to maintain such facilities and the use thereof in compliance with all Legal Requirements then applicable, or (ii) be reasonably required by Lessor in order to prevent annoyance of other tenants in the Building or disruption of their normal business operations by reason of the operation of an animal storage facility in the Basement Space. 8. Delivery of the Second Additional Basement Space. Lessee acknowledges that a portion of the Second Additional Basement Space is currently leased to Pathology Services, Inc. ("Pathology"), another tenant of the Building. In order to induce Pathology to relinquish its right to such space, Lessee has agreed to assume the following obligations to Pathology: 8 9 (i) Lessee shall, at its sole cost and expense, pay for and perform all work required to relocate Pathology's space in the basement of the Building to substitute space identified by Pathology and Lessor, including, without limitation: (A) cleaning up and demolishing the shelving and other alterations constructed or installed by or on behalf of Pathology in the basement space which it currently occupies, (B) designing (or paying for the design by Pathology) of the layout of such substitute basement space, (C) installing demising partitions to create the perimeter of the substitute basement space to which Pathology will relocate, and installing all doors and lighting in such substitute basement space as shown on Exhibit III attached hereto, (D) installing in such substitute basement space shelving of the same linear and square footage as Pathology presently has in the basement space which it currently occupies, as measured by Pathology's architect, (E) patching the basement floor in such substitute basement space to be occupied by Pathology and eliminating trip hazards, and (F) moving (or reimbursing Pathology for the reasonable and actual costs incurred by Pathology in moving) Pathology's property from the basement space which it currently occupies to such substitute basement space; (ii) Lessee shall surrender three (3) On-Site Parking Spaces to Lessor, one by October 31, 1998 and the other two by December 31, 1998, which parking spaces shall then be leased by Lessor to Pathology; and (iii) Lessee shall pay the sum of $45,000.00 in cash to Pathology within seven (7) days after the delivery to Pathology of the completed substitute basement space to be occupied by Pathology, and provide to Lessor evidence of such payment. Lessor hereby acknowledges that such payment has been made to Pathology. Lessee acknowledges that Lessor has no obligation with respect to any work to be performed in connection with the demising and finishing of any such substitute basement space, or the demolition of the basement space currently occupied by any other tenant of the Building, or the relocation of any other tenant's property from the basement space which it currently occupies to any such substitute basement space, or to pay any amount to any tenant of the Building in connection with any of the foregoing. Lessee shall save Lessor harmless and indemnified from any loss, cost and expense (including, without limitation, reasonable attorneys' fees) arising out of or relating to (A) any work performed by or on behalf of Lessee in the basement of the Building or elsewhere in the Building or on the Land in connection with the relocation of other tenants to substitute basement space, (B) any work performed by or on behalf of Lessee in connection with the construction of the Second Additional Basement Space, or (C) any claim by any other tenant of the Building alleging that Lessee failed to perform fully all of its obligations described in this Section. 9. Right of First Offer. In the event that at any time during the Term Lessor commences to market for lease any space in the Building which is not then part of the 9 10 Premises, then, provided that (i) an Event of Default is not then existing, and (ii) the Lessee named herein (or a permitted sublessee or assignee of the type described in Section 8(j) of the Lease) is then actually occupying the entire Premises, Lessee shall have the right (the "Right of First Offer") to lease the portion of the Building set forth in Lessor's notice for a term commencing on the date on which Lessor delivers possession thereof to Lessee, and ending on the last day of the Term, by giving written notice of exercise to Lessor within twenty (20) days of receipt of Lessor's notice. If Lessee exercises its right under this Section 9 to lease such space, then such space shall become subject to all of the terms of this Lease except that Basic Rent therefor shall be due and payable in an amount equal to the Fair Market Rent thereof as of the date on which Lessor reasonably anticipates delivering possession of the space to Lessee. Fair Market Rent shall be determined in the manner provided in Section 3.3 of the Lease. In the event that Lessee, for any reason whatsoever, fails to give such notice to Lessor within such 20-day period, Lessee shall be deemed to have waived its rights under this Section with respect to the space described in Lessor's notice for the remainder of the Term. Any space which is subjected to the terms of this Lease pursuant to this Section 9 shall be delivered broom clean but otherwise in the condition in which it is redelivered to Lessor. Lessor shall have no obligation to perform any preparatory work in such space in anticipation of Lessee's use thereof or to provide any allowance to Lessee towards the preparation thereof. All work performed by Lessee in such space shall be subject to the provisions of the Lease, including, without limitation, Section 11.0(f). Basic Rent shall be due and payable on account of such space commencing on the day on which Lessor delivers possession thereof to Lessee. Lessor shall use reasonable diligence to regain possession of any space with respect to which Lessee has exercised the Right of First Offer herein contained, but Lessor shall not be responsible for any delay by any occupant in vacating such space. Effective upon the date on which Lessor delivers possession to Lessee of any space which is subjected to the terms of this Lease pursuant to this Section 9, such space shall be deemed to be part of the Premises for all purposes of this Lease except that Basic Rent therefor shall be computed as hereinabove provided, and Lessee's Share shall be appropriately modified. Lessee's Right of First Offer shall be subject and subordinate to all rights of extension refusal set forth in any lease executed by Lessor prior to the date of this Amendment, and shall further be subject and subordinate (with respect to space on the third and fourth floors of the Building, to the rights of Pathology). 10. Construction. All work to be performed by or on behalf of Lessee in the Additional Expansion Premises, the basement of the Building, or elsewhere on the Land or in the Building in connection with Lessee's initial occupancy of any of such spaces shall be performed (i) at Lessee's sole cost and expense, (ii) in accordance with the terms of the Lease, and (iii) with respect to construction to be performed in the Second Additional Basement Space, shall also be performed in accordance with the provisions of the Supplemental Work Letter attached as Exhibit II to the Second Amendment to Lease. Promptly after the completion of construction of Lessee's improvements or alterations to the 10 11 Additional Expansion Premises, Lessee shall provide to Lessor a reasonably detailed breakdown of the actual out-of-pocket costs paid by Lessee in connection therewith, allocated among office improvements and other improvements, together with reasonable supporting documentation of such costs and such allocation, certified as accurate by an officer of Lessee. Lessor shall deliver the Additional Expansion Premises and the Second Additional Basement Space to Lessee in the same condition in which they are redelivered by Lifeline to Lessor, and Lessee agrees to accept them in their "as is" condition. Lessor shall not be required to pay for or to perform any work in the Additional Expansion Premises, the Second Additional Basement Space, or elsewhere in the Building in order to prepare for Lessee's occupancy hereunder. Lessee shall, at its sole cost and expense and prior to the expiration of the Lease Term, remove the temporary demising partition separating Area A from Area B. 11. Parking. (a) In addition to the On-Site Parking Spaces which Lessee has leased pursuant to Section 9.0 of the Lease prior to the date of this Amendment, (1) effective on the Area A Commencement Date, Lessor shall lease to Lessee an additional one hundred (100) On-Site Parking Spaces, and (2) effective on the Area B Commencement Date, Lessor shall lease to Lessee an additional forty-eight (48) On-Site Parking Spaces. Lessee shall pay to Lessor, as Additional Rent, for each On-Site Parking Space leased pursuant to this subsection (b), in advance, commencing on the Area A Commencement Date or the Area B Commencement Date, as the case may be, and continuing thereafter on the first calendar day of each month, (i) $75.00 per month during the Initial Term, and (ii) thereafter, an amount equal to the Fair Market Rent of such parking spaces as determined annually in accordance with the Lease. Lessee shall have no right to lease additional On-Site Parking Spaces in connection with its lease of the Additional Expansion Premises other than as set forth in this subsection (b). (b) In addition to the On-Site Parking Spaces, (1) effective on the Area A Commencement Date, Lessor shall lease to Lessee an additional forty (40) parking spaces, and (2) effective on the Area B Commencement Date, Lessor shall lease to Lessee an additional twenty (20) parking spaces (collectively, the "Off-Site Parking Spaces") in a parking lot or lots in the vicinity of the Building as shown cross-hatched on Exhibit IV attached. Lessor reserves the right to relocate all or any portion of the Off-Site Parking Spaces within the area shown on Exhibit IV from time to time during the Term. Lessor shall use its best efforts to spread the Off-Site Parking Spaces over the fewest number of parking lots possible. Lessee shall pay to Lessor, as Additional Rent, for each Off-Site Parking Space so leased, in advance, commencing on the Area A Commencement Date or the Area B Commencement Date, as the case may be, and continuing thereafter on the first calendar day of each month, (i) $60.00 per month during 11 12 calendar year 1999, and (ii) thereafter, an amount equal to the Fair Market Rent of such parking spaces as determined annually in the manner provided in Section 9.0 of the Lease. Notwithstanding the foregoing, in the event that Lessor hereafter reduces the number of the properties shown on Exhibit IV used for parking purposes, and consequently is unable to provide some or all of the Off-Site Parking Spaces on its own property, the named Lessor shall, upon request by Lessee, make reasonable efforts to lease all or a portion of such spaces from a third party, in which event the rent payable on account of such Off-Site Parking Spaces so leased shall be the amount paid by the named Lessor to such third party therefor, without markup. The provisions of the preceding sentence of this paragraph shall not apply to any Lessor other than MIT. 12. Transportation of Animals and Related Materials. No animals, animal waste, food or supplies relating to the animals maintained from time to time in the Basement Space shall be transported within the Building except as provided in the Lease (including, without limitation, Section 5 of the Second Amendment to Lease). 13. Utilities. Lessee shall pay for all electricity consumed within the Basement Space and shall make such payment directly to the company which provides such electrical service. Water and gas consumption in the Basement Space shall be separately metered and Lessee shall pay all charges therefor directly to the company which provides such services. 14. Brokers. Lessor and Lessee each represents to the other that it has dealt with no broker in connection with this Amendment other than Lynch, Murphy, Walsh & Partners ("Broker"). Lessee shall be solely responsible for the payment of all fees and commissions due to Broker in connection with this transaction, and indemnifies and holds Lessor harmless form and against any claim by Broker for any such fee or commission. Each of the parties hereby agrees to indemnify and hold the other party harmless from and against any claims for commissions or fees by any person or firm other than Broker by reason of any act of the indemnifying party. 15. No Services. Notwithstanding anything to the contrary contained in the Lease, Lessor is not providing any services to the Basement Space. Lessee shall make its own arrangements for the cleaning of such space, as well as the provision of electricity, water, gas, HVAC and any other utility or service. 16. Release. (a) In consideration of the agreements contained in this Amendment, Lessee hereby releases and forever discharges Lessor and its officers, directors, employees, agents and servants (collectively, the "Lessor Released Parties"), of and from any and all claims, demands, causes of action, costs, expenses, liabilities and obligations, at law or in equity, which 12 13 Lessee ever had, now has, or hereafter may have against the Lessor Released Parties or any of them, arising out of or relating to the proposed subleasing of the Additional Expansion Premises by Lessee from Lifeline. Lessee hereby acknowledges that its execution and delivery of this Amendment constitute Lessee's intention to enter into the transaction described in this Amendment in full substitution for any proposed sublease of the Additional Expansion Premises from Lifeline. (b) In consideration of the agreements contained in this Amendment, Lessor hereby releases and forever discharges Lessee and its officers, directors, employees, agents and servants (collectively, the "Lessee Released Parties"), of and from any and all claims, demands, causes of action, costs, expenses, liabilities and obligations, at law or in equity, which Lessor ever had, now has, or hereafter may have against the Lessee Released Parties or any of them, arising out of or relating to the proposed subleasing of the Additional Expansion Premises by Lessee from Lifeline. 17. Conditions of Effectiveness. Notwithstanding anything contained herein to the contrary, this Amendment shall not be effective unless and until all of the following occur: (a) Lessor unconditionally delivers to Lessee an executed counterpart of this Amendment; (b) Lessor receives the unconditional delivery of an executed counterpart of an amendment to the lease between Lessor and Pathology, acceptable in all respects to Lessor, pursuant to which Pathology surrenders all of its right, title and interest in and to any portion of the Second Additional Basement Space which is currently leased by Pathology, and otherwise consistent with the terms of this Amendment; and (c) Lessor receives the unconditional delivery of an executed counterpart of an agreement between Lessor and Lifeline terminating the lease between Lessor and Lifeline, acceptable in all respects to Lessor. Lessee acknowledges that Lessor's willingness to enter into this Amendment is based, in part on Lessor's expectation that other tenants of the Building, over whom Lessor has no control, will take the actions described in this Section. Lessor makes no representation or warranty concerning whether or not such other tenants will take such actions so that the foregoing conditions to the effectiveness of this Amendment is satisfied in full. 18. Notice of Amendment to Lease. Either party shall, at the request of the other, execute and acknowledge a Notice of Amendment to Lease in mutually satisfactory form. 19. Authority. Contemporaneously with its execution of this Amendment, 13 14 Lessee shall furnish to Lessor a certified copy of the resolution of the Board of Directors of Lessee authorizing Lessee to enter into this Amendment and to execute and acknowledge the aforementioned Notice of Amendment to Lease. 20. General. This Amendment constitutes the entire agreement of the parties with respect to its subject matter, and no oral statement or prior written matter shall have any force or effect. This Amendment shall not be modified or canceled except by writing subscribed to by all parties. This Amendment shall be governed by and construed in accordance with the laws of the Commonwealth of Massachusetts. The captions of the several paragraphs in this Amendment are for convenience only and shall not be considered in construing this Amendment. In all other respects, the terms and provisions of the Lease are hereby ratified and confirmed and remain in full force and effect and unamended. EXECUTED UNDER SEAL as of the date set forth above. LESSOR: MASSACHUSETTS INSTITUTE OF TECHNOLOGY By: /s/ Philip A. Trussell ------------------------------- Name: Philip A. Trussell Title: Director of Real Estate Associate Treasurer LESSEE: MILLENNIUM PHARMACEUTICALS, INC. By: /s/ Janet C. Bush ------------------------- Name: Janet C. Bush Title: VP FINANCE 14 15 [FLOOR PLAN CHARTS] EX-13 6 1998 ANNUAL REPORT 1 Exhibit 13 Millennium Annual Report Essential Inspiration Extraordinary Innovation 2 Millennium Pharmaceuticals, Inc. SELECTED FINANCIAL DATA
YEAR ENDED DECEMBER 31, 1994 1995 1996 1997 1998 - ---------------------------------------------------------------------------------------------------------------- Statement of Operations Data: (in thousands, except share and per share data) Revenue under strategic alliances $ 7,963 $ 22,880 $ 31,764 $ 89,933 $ 133,682 Costs and expenses: Research and development 10,990 17,838 34,803 74,828 114,190 General and administrative 3,240 3,292 7,973 16,517 24,419 Acquired in-process R&D -- -- -- 83,800 -- Amortization of intangible asset -- -- -- 2,397 2,702 - ---------------------------------------------------------------------------------------------------------------- 14,230 21,130 42,776 177,542 141,311 - ---------------------------------------------------------------------------------------------------------------- Income (loss) from operations (6,267) 1,750 (11,012) (87,609) (7,629) Interest income (expense), net (105) (466) 2,244 2,977 3,788 Minority interest -- -- -- 3,410 14,179 - ---------------------------------------------------------------------------------------------------------------- Net income (loss) $(6,372) $ 1,284 $ (8,768) $ (81,222) $ 10,338 - ---------------------------------------------------------------------------------------------------------------- Basic net income (loss) per share (pro forma in 1995 and 1996) $ 0.09 $ (0.40) $ (2.87) $ 0.34 Shares used in computing basic net income (loss) per share 13,851,639 21,696,894 28,322,722 30,319,175 Diluted net income (loss) per share (pro forma in 1995 and 1996) $ 0.07 $ (0.40) $ (2.87) $ 0.33 Shares used in computing diluted net income (loss) per share 17,853,914 21,696,894 28,322,722 31,508,308
YEAR ENDED DECEMBER 31, 1994 1995 1996 1997 1998 - ---------------------------------------------------------------------------------------------------------------- Consolidated Balance Sheet Data: (in thousands) Cash, cash equivalents and marketable securities $ 6,105 $ 17,847 $ 63,848 $ 96,557 $ 190,964 Working capital 3,151 10,498 60,273 85,571 178,395 Total assets 10,101 25,105 87,744 144,513 257,954 Long-term debt, net of current portion 3,067 1,467 - - - Capital lease obligation, net of current portion 2,359 2,499 9,308 19,809 24,827 Stockholders' equity $ 1,559 $ 13,096 $ 66,639 $ 91,755 $ 206,362
3 Millennium Pharmaceuticals, Inc. MANAGEMENT'S DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION AND RESULTS OF OPERATIONS OVERVIEW Millennium Pharmaceuticals, Inc. ("Millennium" or "the Company") incorporates large-scale genetics, genomics, high throughput screening, and informatics in an integrated science and technology platform. We apply this technology platform primarily in discovering and developing proprietary therapeutic and diagnostic human healthcare products and services. The Company has two subsidiaries, Millennium BioTherapeutics, Inc. ("MBio") and Millennium Predictive Medicine, Inc. ("MPMx"). MBio is focused on developing therapeutic proteins and antibodies, vaccines and gene therapy, and antisense products. MPMx is focused on Diagnomics(TM) (genomics-based diagnostics) and pharmacogenomics (correlation of patient genotypes to drug responses), and on generating and integrating diverse biomedical data to provide products and services to the healthcare industry. Within the parent company, referred to herein as "MPI," Millennium focuses on the development of small-molecule drugs, on continuing development and integration of the platform, on high-throughput processes and services, and on information and informatics technologies that support our strategic alliances and discovery efforts across the entire organization. During 1998, Millennium expanded efforts in our subsidiaries and in the parent company. We hired additional staff in research and drug discovery, informatics, biotherapeutics and diagnostics/prognostics, as well as in other support areas. Millennium formed MPMx and Millennium Information, Inc. ("MInfo") in September 1997. MInfo was established to generate and integrate biomedical data and develop information products and services for use by the healthcare industry. During 1998, Millennium combined the operations of these two subsidiaries. In January 1999, MInfo was merged with MPMx, and MPMx was the surviving corporation of the merger. In September 1998, Millennium formed a broad alliance with Bayer AG ("Bayer"). Under the terms of this agreement, Bayer will receive access to key technologies in gene research as well as a flow of genomics-based drug development targets that Millennium discovers through our research efforts. This collaboration also gives Millennium residual rights to develop, on our own behalf, certain products derived from research conducted under the alliance. As part of the agreement, Bayer invested $96.6 million in November 1998 for approximately 4.96 million common shares of Millennium stock and made an up-front license payment of $33.4 million. To date, all of Millennium's revenues have resulted from payments from strategic partners and United States government research grants. We have not received any revenue from the sale of products. Millennium's strategic alliances through the end of 1998 include the following: two agreements with the Wyeth-Ayerst Division of American Home Products ("AHP") in certain disorders of the central nervous system and in bacterial diseases; an agreement with Astra AB ("Astra") in inflammatory respiratory diseases; an agreement with Bayer in cardiovascular disease, areas of oncology not covered by Millennium's alliance with Lilly, osteoporosis, pain, liver fibrosis, hematology and viral infections; two agreements with Eli Lilly and Company ("Lilly") in atherosclerosis, and in select areas of oncology, as well as a third agreement, through MBio, in therapeutic proteins; an agreement with Hoffmann-La Roche, Inc. ("Roche") in obesity and type 2 diabetes; an agreement with Monsanto Company 4 ("Monsanto") in plant agriculture; and an agreement with Pfizer, Inc. ("Pfizer") in the area of antifungal treatments. These agreements have provided the Company with various combinations of equity investments, up-front and follow-on fees and research funding, and may provide certain additional payments contingent upon the attainment of research and regulatory milestones and royalty and/or profit sharing payments based on sales of any products resulting from the collaborations. During 1999, we expect to continue to pursue additional alliances, and will consider joint development and acquisition opportunities that may provide Millennium with access to products on the market or in later stages of commercial development than those represented within our current programs. We expect that Millennium will incur increasing expenses and may incur increasing operating losses for at least the next several years, primarily due to expansion of facilities and research and development programs, and as a result of efforts to advance acquired products or our own development programs to commercialization. Our revenues under strategic alliance and licensing arrangements may fluctuate from period to period or year to year in both timing and amounts; these fluctuations, as well as fluctuations in spending, may result in periods of profitability and periods of losses. Therefore, Millennium's results of operations for any period may not be comparable to the results of operations for any other period. RESULTS OF OPERATIONS YEARS ENDED DECEMBER 31, 1998 AND DECEMBER 31, 1997 Revenue under strategic alliances increased to $133.7 million for the year ended December 31, 1998 (the "1998 Period") from $89.9 million for the year ended December 31, 1997 (the "1997 Period"). During the 1998 Period, Millennium recognized revenue from all seven of its partners in ten alliances. During the 1997 Period, Millennium recognized revenue from six partners, AHP, Astra, Lilly, Monsanto, Roche and Pfizer, in nine alliances. The 1998 Period included a $33.4 million one-time payment from Bayer received in November. In addition, during 1998, Monsanto provided $38.2 million in a combination of program and technology transfer fees, performance payments for achievement of research objectives, and payments for administrative and facilities services. The 1998 Period included a full year of research funding under our eight other alliances as well. The 1997 Period included a one-time license fee of $38 million from Monsanto in the fourth quarter. Research and development expenses increased to $114.2 million for the 1998 Period from $74.8 million for the 1997 Period. The increase was primarily attributable to increased personnel expenses, facilities expenses, increases in spending for laboratory supplies, and external collaborations and increased equipment depreciation. We expect research and development expenses to continue to increase as personnel are added and as research and development activities are expanded to accommodate our existing strategic alliances and additional commitments that we may undertake in the future. General and administrative expenses increased to $24.4 million for the 1998 Period from $16.5 million for the 1997 Period. The increase was primarily attributable to increased expenses for additional management and administrative personnel, as well as to increases in facilities expenses, consulting, and other professional fees associated with the expansion and increased complexity of our operations and business development efforts. We expect that general and administrative expenses will continue to increase as Millennium continues to grow. During 1997, Millennium acquired ChemGenics Pharmaceuticals Inc. ("ChemGenics") for approximately 4.8 million shares of common stock at $21.50 per share. 5 In connection with the ChemGenics acquisition, Millennium incurred a nonrecurring charge of $83.8 million for acquired in-process research and development in 1997, and amortization expense of $2.7 million in 1998 and $2.4 million in 1997. The in-process research and development was charged to operations because, in management's opinion, technological feasibility for the acquired research and development had not been established and would require a significant amount of additional expenditures over a number of years. Millennium had net interest income of $3.8 million for the 1998 Period and net interest income of $3.0 million for the 1997 Period. Interest income increased in 1998 due to the increase in our average cash balance. Interest expense grew in 1998 due to increases in capital lease obligations during that year. The minority interest of $14.2 million in 1998 and $3.4 million in 1997 represents the entire net loss of MBio. This loss is attributed completely to the minority stockholder because the minority stockholder has provided all equity funding for MBio. YEARS ENDED DECEMBER 31, 1997 AND DECEMBER 31, 1996 Revenue under strategic alliances increased to $89.9 million for the 1997 Period from $31.8 million for the year ended December 31, 1996 (the "1996 Period"). During 1997, Millennium recognized revenue from six partners in nine alliances. During the 1996 Period, we recognized revenue from four partners, AHP, Astra, Lilly and Roche, in five alliances. The 1997 Period included an up-front license fee of $38 million from Monsanto in the fourth quarter, a full year of funding under five alliances, 11 months of funding under two alliances and a partial year of funding under the MBio alliance with Lilly. The 1996 Period included an up-front license fee from AHP and various research milestone payments. Effective March 1996, Lilly exercised its option to enter into a strategic alliance with the Company in select areas of oncology. As a result, we recognized $2.8 million of revenue that had been previously deferred. Research and development expenses increased to $74.8 million for the 1997 Period from $34.8 million for the 1996 Period. The increase was primarily attributable to increased personnel expenses associated with staffing growth due to the ChemGenics acquisition, the establishment and staffing of MBio, and other additional research and development personnel. Related to these costs were increases in facilities expenses, increases in purchases of laboratory supplies and increased equipment depreciation. General and administrative expenses increased to $16.5 million for the 1997 Period from $8.0 million for the 1996 Period. The increase was primarily attributable to increased expenses for additional management and administrative personnel, as well as to increases in facilities expenses, consulting and professional fees. Millennium had net interest income of $3.0 million for the 1997 Period and net interest income of $2.2 million for the 1996 Period. Interest income grew because of an increase in our average cash balance. Interest expense grew due to additional capitalized lease obligations during 1997. The minority interest in 1997 of $3.4 million represents the entire net loss of MBio. This loss is attributed completely to the minority stockholder because the minority stockholder has provided all equity funding for MBio. LIQUIDITY AND CAPITAL RESOURCES Millennium has financed operations since inception primarily through strategic alliances, a public offering, private placement of equity securities, and issuance of debt and capital leases. Through December 31, 1998, Millennium has recognized approximately $286 million of revenue under strategic alliances. In November 1998, Bayer invested $96.6 million for approximately 4.96 million shares of Millennium common stock. In May 1996, we completed an initial public offering of common stock resulting in proceeds, net of underwriting discounts and offering costs, of $57.1 million. The private placement of equity securities has provided aggregate gross proceeds of approximately 6 $45.9 million. We have obtained $4.0 million in long-term debt, $49.1 million in capital lease financings and $1.1 million to finance a facility construction project. As of December 31, 1998, Millennium had approximately $191 million in cash, cash equivalents and marketable securities. During 1998, Millennium acquired assets under capital leases totaling $15.2 million and expended an additional $7.6 million for equipment, leasehold improvements and construction in progress. At December 31, 1998, the aggregate outstanding commitment under capital lease obligations was $33.5 million. We expect capital expenditures to continue at a level at least as significant as expenditures in 1998 over the next several years as we expand facilities and acquire equipment to support increased research and development and other efforts. In addition, we have entered into commitments to provide security deposits associated with facilities leases of approximately $10.8 million through December 31, 1998. The Company maintains an investment portfolio in accordance with its Investment Policy. The primary objectives of the Company's Investment Policy are to preserve principal, maintain proper liquidity to meet operating needs and maximize yields. The Company's Investment Policy specifies credit quality standards for the Company's investments and limits the amount of credit exposure to any single issue, issuer or type of investment. The Company does not believe that there is any material market risk exposure with respect to derivative or other financial instruments which would require disclosure under this item. As of December 31, 1998, Millennium had net operating loss carryforwards of approximately $16.5 million to offset future federal and state taxable income through 2013. Due to the degree of uncertainty related to the ultimate realization of such prior losses, no benefit has been recognized as of December 31, 1998. Moreover, Millennium's ability to utilize these losses in future years may be limited under the change of stock ownership rules of the Internal Revenue Service. Millennium believes that existing cash and marketable securities and anticipated cash payments from its strategic alliances will be sufficient to support our operations for the foreseeable future. Our forecast of the period of time through which our financial resources will be adequate to support operations is forward-looking information, and, as such, actual results may vary. Factors that may cause actual results to vary include those described below under the heading "Factors Affecting Future Operating Results." IMPACT OF YEAR 2000 The Year 2000 issue is the result of computer programs that were written using two digits rather than four to define the applicable year. Any computer program that has date-sensitive software may recognize a date using "00" as the year 1900 rather than the Year 2000. It is possible that this incorrect recognition of dates could cause system failures or miscalculations of data. If these errors were to occur in Millennium systems, they could cause us to be unable to process data and engage in normal business activities. Millennium has determined that we have Year 2000 exposure in the following areas: (i) software and hardware embedded in our laboratory equipment and used in our research and development programs, (ii) computer software and hardware used in our business and facilities operations and (iii) computer systems used by vendors and suppliers with whom we do business. In addition, we have Year 2000 exposure with respect to internally developed informatics application software that is used by Millennium and certain alliance partners who have access to our technology platform. 7 Millennium has a Year 2000 task force that is evaluating our internal computer programs, systems and equipment and overseeing our Year 2000 efforts. We are using both internal and external resources to identify potential issues, costs and solutions to address Year 2000 concerns. For this effort, we are using procedures outlined in the Government Accounting Office's Y2K Guide. We have completed a preliminary inventory of our informatics applications, and we are conducting an in-depth assessment of this inventory. In addition, we have inventoried a substantial amount of software and hardware embedded in our laboratory and facilities equipment as part of our effort to determine Year 2000 compliance. We are also making inquiries of our important suppliers and vendors to assess their Year 2000 readiness. We have inventoried software used in our business operations as well. We intend to identify critical systems and equipment on which to focus our inquiries and testing. To date, we have identified aspects of our computer hardware, network infrastructure and business systems that are not Year 2000 compliant. We have obtained and begun to implement vendor recommendations for correcting these deficiencies. We have also identified aspects of internally developed software applications that are not Year 2000 compliant and have begun testing and corrective programs in this area. In addition, we expect to complete an inventory and assessment of critical laboratory and facilities equipment and systems by the end of the first quarter of 1999. We expect to complete testing and remediation for critical computer hardware, network infrastructure, business systems and internally developed software applications by the end of the third quarter of 1999. We expect to complete testing and any remediation of critical laboratory and facilities equipment by the end of the year. We are not experiencing and do not anticipate any forward-looking problems. At the current time, we expect to be able to correct the problems of which we are aware in a reasonable and timely manner. As we have not completed our evaluation of all of our critical systems, software or equipment, there can be no assurance that we will not find problems that will require us to incur substantial costs to correct or will disrupt our business. Should such problems occur, they could have a material adverse effect on our business, financial position or results of operations. We do not currently have contingency plans for all critical aspects of our systems and operations in the event that we or any of our important suppliers or vendors are not able to become Year 2000 compliant. We expect to develop contingency plans for critical areas if we determine that we or any important vendors or suppliers are not likely to become Year 2000 compliant. We have not incurred material remediation costs to date and we do not currently expect that the aggregate cost of our efforts will be material to our operations or financial position taken as a whole. However, it is possible that remediation costs will be greater than we anticipate and that such costs could have a material adverse effect on our financial position or results of operations. Our alliance partners or collaborators may also experience disruption as a result of the Year 2000 issue. If our alliance partners and collaborators experience disruption, it is possible that our alliances with these partners could be adversely affected, which could have a material adverse effect on our financial position and results of operations. There can be no assurance that we will identify all Year 2000 compliance problems as a result of our efforts or that we will be able to correct compliance problems that are identified in a timely manner. If we are unable, in a timely manner, to identify and correct compliance problems in critical systems and equipment, our business, financial position and results of operations could be adversely affected. FACTORS AFFECTING FUTURE OPERATING RESULTS 8 This Annual Report to Stockholders contains forward-looking statements. For this purpose, any statements contained in the Annual Report that are not statements of historical fact may be considered to be forward-looking statements. Although not a complete list of words that might identify forward-looking statements, we use the words "believes," "anticipates," "plans," "expects," "intends" and similar expressions to identify forward-looking statements. There are a number of important factors that could cause Millennium's actual results to differ materially from those indicated by forward-looking statements. These factors include, but are not limited, those listed below and elsewhere in this Annual Report to Stockholders and in the Section titled "Business-Factors which May Affect Results" in the Company's Annual Report on Form 10-K for the year ended December 31, 1998, as filed with the Securities and Exchange Commission, incorporated herein by reference. To date, Millennium has not developed or commercialized any products or services based on our technological approaches. There can be no assurance that these approaches will enable us to successfully discover and develop life-science-based products and services. In addition, we face intense competition from commercial and academic organizations, many of which are larger and better financed. Millennium has a substantial accumulated deficit. We may incur losses for at least the next several years, or may show periods of profitability and periods of losses. Losses may increase as we expand our infrastructure, research and development, and commercialization activities. We will require substantial additional funds for our research and development programs, operating expenses, the pursuit of regulatory approvals and expansion of our production, sales and marketing capabilities. Adequate funds for these purposes, whether through equity or debt financings, collaborative or other arrangements with corporate partners or from other sources, may not be available when needed or on terms acceptable to us. Insufficient funds could require us to delay, scale back or eliminate certain of our research and product development programs or to license third parties to commercialize products or technologies that we would otherwise develop or commercialize ourselves. Millennium's strategy for development and commercialization of therapeutic and diagnostic products based upon our discoveries and technologies depends upon the formation of various strategic alliances, licensing and technology transfer arrangements. There can be no assurance that current or any future strategic alliances, licensing or technology transfer arrangements ultimately will be successful. If any of our strategic partners was to breach or terminate its agreement with us or otherwise fail to conduct its collaborative activities successfully in a timely manner, such breach, termination or other failure could have a material adverse effect on our business, financial condition and results of operations. Proprietary rights relating to Millennium's future products, and to our methods and services will be protected from unauthorized use by third parties only to the extent that they are covered by valid and enforceable patents or are maintained in confidence as trade secrets. There can be no assurance that any pending patent applications relating to our products, methods and services will result in patents being issued or that any such patents will afford protection against competitors with similar technology. There may be pending or issued third-party patents relating to our methods and services and we may need to acquire licenses to, or to contest the validity of, any such patents. It is likely that we would need to expend significant funds to defend any claim that Millennium infringes a third-party patent. There can be no assurance that any license required under any such patent would be made available. During 1998, Millennium significantly increased the scale of our operations to support the expansion of our disease research programs and alliances. The resulting growth in personnel and facilities could place significant strains on our management, operations and systems. Inability to manage such growth effectively could have a material adverse effect on the Company's business, financial position and results of operations. 9 Other factors that may affect our future operating results include the inherent risk of product liability claims which may result from testing, marketing and sale of pharmaceutical products, fluctuations in our quarterly operating results, our ability to continue to attract and retain qualified management and scientific staff, and the ability of our alliance partners or ourselves to obtain on a timely basis regulatory approvals for marketing and sale of products and to compete successfully in the market. 10 Millennium Pharmaceuticals, Inc. Report of Independent Auditors Board of Directors and Stockholders Millennium Pharmaceuticals, Inc. We have audited the accompanying consolidated balance sheets of Millennium Pharmaceuticals, Inc. as of December 31, 1998 and 1997, and the related consolidated statements of operations, stockholders' equity, and cash flows for each of the three years in the period ended December 31, 1998. These financial statements are the responsibility of the Company's management. Our responsibility is to express an opinion on these financial statements based on our audits. We conducted our audits in accordance with generally accepted auditing standards. Those standards require that we plan and perform the audit to obtain reasonable assurance about whether the financial statements are free of material misstatement. An audit includes examining, on a test basis, evidence supporting the amounts and disclosures in the financial statements. An audit also includes assessing the accounting principles used and significant estimates made by management, as well as evaluating the overall financial statement presentation. We believe that our audits provide a reasonable basis for our opinion. In our opinion, the consolidated financial statements referred to above present fairly, in all material respects, the consolidated financial position of Millennium Pharmaceuticals, Inc. at December 31, 1998 and 1997, and the consolidated results of operations, stockholders' equity and cash flows for each of the three years in the period ended December 31, 1998, in conformity with generally accepted accounting principles. Ernst & Young LLP February 8, 1999 Boston, Massachusetts 11 Millennium Pharmaceuticals, Inc. CONSOLIDATED BALANCE SHEETS
December 31, 1998 1997 (in thousands, except par value and shares) - ------------------------------------------------------------------------------- ASSETS Current assets: Cash and cash equivalents $138,284 $ 69,236 Marketable securities 52,680 27,321 Due from strategic partners 6,660 778 Prepaid expenses and other current assets 5,033 4,595 - ------------------------------------------------------------------------------- Total current assets 202,657 101,930 Property and equipment, net 38,170 29,030 Restricted cash and other assets 11,416 5,140 Intangible asset, net 5,711 8,413 - ------------------------------------------------------------------------------- Total assets $257,954 $144,513
LIABILITIES AND STOCKHOLDERS' EQUITY Current liabilities: Accounts payable $ 6,918 $ 3,165 Accrued expenses 6,186 4,294 Deferred revenue 2,501 3,053 Current portion of capital lease obligations 8,657 5,847 - ------------------------------------------------------------------------------- Total current liabilities 24,262 16,359 Capital lease obligations, net of current portion 24,827 19,809 Minority interest 2,503 16,590 Commitments and contingencies STOCKHOLDERS' EQUITY: Preferred Stock, $0.001 par value; 5,000,000 shares authorized, none issued -- -- Common Stock, $0.001 par value; 100,000,000 shares authorized: 34,923,204 shares in 1998 and 29,169,398 shares in 1997 issued and outstanding 35 29 Additional paid-in capital 296,370 193,254 Deferred compensation (957) (1,992) Notes receivable from officers (87) (166) Other Comprehensive income (loss) 29 (4) Accumulated deficit (89,028) (99,366) - -------------------------------------------------------------------------------- Total stockholders' equity 206,362 91,755 - -------------------------------------------------------------------------------- Total liabilities and stockholders' equity $257,954 $144,513
12 Millennium Pharmaceuticals, Inc. CONSOLIDATED STATEMENTS OF OPERATIONS
Year Ended December 31, 1998 1997 1996 (in thousands, except per share and share data) - -------------------------------------------------------------------------------------------------------------- Revenue under strategic alliances $ 133,682 $ 89,933 $ 31,764 Costs and expenses: Research and development 114,190 74,828 34,803 General and administrative 24,419 16,517 7,973 Acquired in-process R&D -- 83,800 -- Amortization of intangible asset 2,702 2,397 -- - -------------------------------------------------------------------------------------------------------------- 141,311 177,542 42,776 - -------------------------------------------------------------------------------------------------------------- Loss from operations (7,629) (87,609) (11,012) Interest income 6,198 4,412 3,131 Interest expense (2,410) (1,435) (887) Minority interest 14,179 3,410 -- - -------------------------------------------------------------------------------------------------------------- Net income (loss) $ 10,338 $ (81,222) $ (8,768) - -------------------------------------------------------------------------------------------------------------- Basic net income (loss) per share (pro forma in 1996) $ 0.34 $ (2.87) $ (0.40) Shares used in computing basic net income (loss) per share 30,319,175 28,322,722 21,696,894 Diluted net income (loss) per share (pro forma in 1996) $ 0.33 $ (2.87) $ (0.40) Shares used in computing diluted net income (loss) per share 31,508,308 28,322,722 21,696,894
13 Millennium Pharmaceuticals, Inc. CONSOLIDATED STATEMENTS OF CASH FLOWS
Year Ended December 31, 1998 1997 1996 (in thousands) - -------------------------------------------------------------------------------------------------------- OPERATING ACTIVITIES Net income (loss) $ 10,338 $ (81,222) $ (8,768) Adjustments to reconcile net income (loss) to cash provided by (used in) operating activities: Acquired in-process R&D -- 83,800 -- Depreciation and amortization 16,284 12,168 3,867 Minority interest (14,179) (3,410) -- Net loss on asset disposal 97 433 199 Amortized interest income -- -- (280) Stock compensation 2,029 1,693 774 Changes in operating assets and liabilities: Prepaid expenses and other current assets (438) (1,706) (1,818) Due from strategic partners (5,882) 4,932 (3,967) Restricted cash and other assets (6,276) (4,465) (288) Accounts payable and accrued expenses 5,645 2,962 1,856 Deferred revenue (552) (1,480) 433 - -------------------------------------------------------------------------------------------------------- Net cash provided by (used in) operating activities 7,066 13,705 (7,992) INVESTING ACTIVITIES Purchase of property and equipment (7,590) (4,256) (3,210) Sale of marketable securities 59,606 58,728 52,595 Purchase of marketable securities (84,932) (30,778) (99,113) - -------------------------------------------------------------------------------------------------------- Net cash provided by (used in) investing activities (32,916) 23,694 (49,728) FINANCING ACTIVITIES Proceeds from sale of Common Stock and warrants 96,600 -- 57,403 Proceeds from sale of subsidiary stock -- 20,000 -- Acquisition of ChemGenics, net of cash acquired -- 7,087 -- Net proceeds from employee stock purchases 5,699 2,039 653 Payments on long-term debt -- (1,467) (1,600) Payments of capital lease obligations (7,401) (5,910) (2,734) Proceeds from sale of Preferred Stock -- -- 3,500 - -------------------------------------------------------------------------------------------------------- Net cash provided by financing activities 94,898 21,749 57,222 - -------------------------------------------------------------------------------------------------------- Increase (decrease) in cash and cash equivalents 69,048 59,148 (498) Cash and cash equivalents at beginning of year 69,236 10,088 10,586 - -------------------------------------------------------------------------------------------------------- Cash and cash equivalents at end of year $ 138,284 $ 69,236 $ 10,088 - -------------------------------------------------------------------------------------------------------- NONCASH INVESTING AND FINANCING ACTIVITIES: Equipment acquired under capital leases $ 15,229 $ 17,426 $ 11,142
14 Millennium Pharmaceuticals, Inc. STATEMENTS OF STOCKHOLDERS' EQUITY
(in thousands, except shares) Convertible Preferred Stock Common Stock - --------------------------------------------------------------------------------------------------------- shares amount shares amount - --------------------------------------------------------------------------------------------------------- Balance at December 31, 1995 11,783,333 $ 12 4,211,926 $ 4 Issuance of Series D Convertible Preferred Stock 388,888 Conversion of Convertible Preferred Stock to Common Stock (12,172,221) (12) 12,172,221 12 Issuance of Common Stock 5,175,000 5 Repurchase of Common Stock (342,818) Exercise of stock warrants 300,000 1 Employee stock purchases 2,343,197 2 Issuance of Common Stock in exchange for note from officer 54,625 Forgiveness of notes from officers Deferred stock compensation Stock compensation earned Net loss Unrealized loss on marketable securities Comprehensive loss - --------------------------------------------------------------------------------------------------------- Balance at December 31, 1996 -- -- 23,914,151 24 Issuance of Common Stock 4,783,688 5 Repurchase of Common Stock (87,130) Exercise of stock warrants 123,589 Employee stock purchases 415,312 Forgiveness of notes from officers Stock compensation expense Write off deferred stock compensation Stock compensation earned 401K stock match 19,788 Net loss Unrealized gain on marketable securities Comprehensive loss - --------------------------------------------------------------------------------------------------------- Balance at December 31, 1997 29,169,398 29 Issuance of Common Stock 4,957,660 5 Repurchase of Common Stock (55,200) Exercise of stock warrants 23,090 Employee stock purchases 796,938 1 Forgiveness of notes from officers Stock compensation expense Write off deferred stock compensation Stock compensation earned 401K stock match 31,318 Net income Unrealized gain on marketable securities Comprehensive income - --------------------------------------------------------------------------------------------------------- Balance at December 31, 1998 34,923,204 $ 35
15
Notes Other Additional Receivable Comprehensive Total Paid-in Deferred from Income Accumulated Stockholders' Capital Compensation Officers (Loss) Deficit Equity - ---------------------------------------------------------------------------------------- $ 22,722 $(266) $ (9,376) $ 13,096 3,500 3,500 57,097 57,102 (3) (3) 300 301 654 656 33 (54) (21) 75 75 3,487 $(3,487) 719 719 (8,768) (8,768) $(18) (18) -------- (8,786) - ------------------------------------------------------------------------------------- 87,790 (2,768) (245) (18) (18,144) 66,639 102,844 (247) 102,602 (23) (23) 2,062 2,062 79 79 370 370 (119) 119 904 904 330 330 (81,222) (81,222) 14 14 -------- (81,208) - ------------------------------------------------------------------------------------- 193,254 (1,992) (166) (4) (99,366) 91,755 96,595 96,600 (23) (23) 5,629 5,630 79 79 565 565 (182) 182 853 853 532 532 10,338 10,338 33 33 -------- 10,371 - ------------------------------------------------------------------------------------- $296,370 $ (957) $ (87) $ 29 $(89,028) $206,362
16 Millennium Pharmaceuticals, Inc. NOTES TO CONSOLIDATED FINANCIAL STATEMENTS December 31, 1998 [1] BASIS OF PRESENTATION THE COMPANY Millennium Pharmaceuticals, Inc. incorporates large-scale genetics, genomics, high throughput screening, and informatics in an integrated science and technology platform. Millennium applies this technology platform primarily in discovering and developing proprietary therapeutic and diagnostic human healthcare products and services. The consolidated financial statements include the accounts of the Company and its 82%-owned subsidiary, Millennium BioTherapeutics, Inc. ("MBio"), as well as its wholly-owned subsidiary, Millennium Predictive Medicine, Inc. ("MPMx"). As more fully described in Note 4, the consolidated financial statements include the accounts of ChemGenics Pharmaceuticals Inc. ("ChemGenics") subsequent to February 10, 1997. All intercompany transactions have been eliminated in consolidation. RISKS AND UNCERTAINTIES The preparation of financial statements in accordance with generally accepted accounting principles requires management to make estimates and assumptions that affect the reported amounts of assets and liabilities, and disclosure of contingent assets and liabilities at the date of the financial statements and the reported amounts of revenue and expenses during the reporting period. Actual results could differ from those estimates. [2] SIGNIFICANT ACCOUNTING POLICIES CASH EQUIVALENTS AND MARKETABLE SECURITIES Cash equivalents consist principally of money market funds and corporate bonds with original maturities of three months or less at the date of purchase. Cash equivalents and marketable securities at December 31, 1998 and 1997 are classified as available-for-sale. CONCENTRATIONS OF CREDIT RISK Financial instruments that potentially subject the Company to concentrations of credit risk consist principally of cash equivalents and marketable securities. The Company's cash equivalents and marketable securities are held by high-credit quality financial institutions. By policy, the Company limits the credit exposure to any one financial institution. At December 31, 1998, the Company had no significant concentrations of credit risk. PROPERTY AND EQUIPMENT Equipment consists principally of assets held under capitalized leases and is stated at the present value of future minimum lease obligations. Depreciation is recorded over the shorter of the estimated useful life or the term of the lease using the straight-line method. Leasehold improvements are stated at cost and are amortized over the remaining life of the building lease. 17 INTANGIBLE ASSET Goodwill recorded in connection with the ChemGenics acquisition (See Note 4) is being amortized over a period of four years. REVENUE RECOGNITION The Company recognizes revenue under strategic alliances as research services are performed, reimbursable expenses are incurred, certain milestones are achieved or license fees are earned. STOCK-BASED COMPENSATION The Company has elected to follow Accounting Principles Board Opinion No. 25, "Accounting for Stock Issued to Employees" (APB 25), in accounting for its stock-based compensation plans, rather than the alternative fair value accounting method provided for under Financial Accounting Standards Board ("FASB") Statement of Financial Accounting Standards ("SFAS") No. 123, "Accounting for Stock-Based Compensation," as this alternative requires the use of option valuation models that were not developed for use in valuing employee stock options. Under APB 25, when the exercise price of options granted under these plans equals the market price of the underlying stock on the date of grant, no compensation expense is required. ACCOUNTING PRONOUNCEMENTS Effective January 1, 1998, the Company adopted SFAS No. 130, "Reporting Comprehensive Income," which established standards for reporting and displaying comprehensive income and its components in a full set of general-purpose financial statements. The adoption of SFAS 130 resulted in revised disclosures but had no effect on the financial position, results of operations or liquidity of the Company. Comprehensive income is reported by the Company in the statements of stockholders' equity. Effective January 1, 1998, the Company adopted SFAS No. 131, "Disclosures about Segments of an Enterprise and Related Information." SFAS No. 131 established standards for the way that public business enterprises report information about operating segments in annual financial statements and interim financial reports. SFAS No. 131 also established standards for related disclosures about products and services, geographic areas and major customers. The adoption of SFAS No. 131 did not affect results of operations or financial position. The Company has identified three operating segments which, under the applicable provision of SFAS No. 131, have been aggregated into one reportable segment. The Company conducts business exclusively in the United States. In June 1998, the FASB issued SFAS No.133, "Accounting for Derivative Instruments and Hedging Activities," which is effective for fiscal years beginning after June 15, 1999. The Company believes the adoption of this new accounting standard will not have a significant effect to its financial statements as the Company's investment policies prohibit the use of derivatives. INCOME TAXES The liability method is used to account for income taxes. Deferred tax assets and liabilities are determined based on differences between financial reporting and income tax bases of assets and liabilities, as well as net operating loss carryforwards, and are measured using the enacted tax rates and laws that will be in effect when the differences reverse. Deferred tax assets may be reduced by a valuation allowance to reflect the uncertainty associated with their ultimate realization. 18 FAIR VALUE OF FINANCIAL INSTRUMENTS The carrying amounts reported in the Company's balance sheets for other current assets and long-term debt approximate their fair value. The fair values of the Company's long-term debt are estimated using discounted cash flow analyses based on the Company's current incremental borrowing rates for similar types of borrowing arrangements. NET INCOME (LOSS) PER SHARE Net income per share for 1998 is computed using the weighted-average number of common shares and dilutive-equivalent shares from stock options and warrants using the treasury stock method. Net loss per share for 1997 is computed using the weighted-average number of common shares outstanding. Pro forma net loss per share for 1996 is computed using the weighted-average number of common shares, convertible preferred shares assuming conversion at date of issuance, and dilutive equivalent shares from stock options and warrants using the treasury-stock method. At December 31, 1998, the difference between basic and diluted shares used in the computation of earnings per share is the 1,189,133 weighted-average common equivalent shares resulting from outstanding common stock options and warrants. Historical earnings per share for 1996 has not been presented since such amount is not deemed meaningful due to the significant change in the Company's capital structure that occurred in connection with the initial public offering. [3] SUBSIDIARIES MILLENNIUM BIOTHERAPEUTICS, INC. In May 1997, the Company established Millennium BioTherapeutics, Inc. ("MBio") as a subsidiary and, pursuant to a Technology Transfer and License Agreement, transferred and/or licensed certain technology to MBio in exchange for 9,000,000 shares of the subsidiary's Series A Convertible Preferred Stock. At that time, MBio entered into a strategic alliance with Eli Lilly and Company ("Lilly") for the discovery and development of novel therapeutic proteins (See Note 5). Under the terms of a related stock purchase agreement, Lilly purchased $20 million of Series B Convertible Preferred Stock of MBio for an approximate 18% equity interest in MBio. The accompanying consolidated financial statements include the accounts of MBio since inception. The minority interest included in the accompanying consolidated balance sheets reflects the equity interest of Lilly in MBio as of the balance sheet date and the minority interest included in the accompanying consolidated statements of operations represents the minority stockholder's interest in the net loss of MBio for the years ended December 31, 1998 and 1997. Since the minority stockholder has provided all equity funding, the entire net loss of MBio is attributed to the minority stockholder. The Company is not required to provide any funds for the operations of MBio, but has entered into certain agreements with this subsidiary to provide specific services and facilities at negotiated fees. Such fees amounted to $12.2 million and $5.6 million in 1998 and 1997, respectively. The Company has subleased approximately $0.6 million of equipment to MBio under an existing capital lease agreement. All such intercompany transactions have been eliminated in consolidation. MILLENNIUM PREDICTIVE MEDICINE, INC. In September 1997, the Company established a wholly-owned subsidiary, Millennium Predictive Medicine, Inc. ("MPMx"), to develop products and services to optimize the prevention, diagnosis, treatment and management of disease. In addition, in September 1997, the Company incorporated Millennium Information, Inc. ("MInfo") to generate and integrate biomedical data and develop information products and services for use by the healthcare industry. The accompanying consolidated financial statements include the accounts of MPMx and MInfo since 19 inception. During 1998, Millennium combined the operations of these two subsidiaries. In January 1999, MInfo was merged with MPMx, and MPMx was the surviving entity of the merger. All intercompany transactions with these subsidiaries have been eliminated in consolidation. [4] MERGER On February 10, 1997, the Company acquired ChemGenics Pharmaceuticals Inc. ("ChemGenics") for 4,783,688 shares of Common Stock at $21.50 per share, approximately $103 million in aggregate. In addition, a principal shareholder of ChemGenics received approximately $4 million in settlement of a promissory note and repurchase of warrants previously issued by ChemGenics, and outstanding warrants were purchased from another shareholder of ChemGenics for approximately $.5 million. The transaction has been recorded as a purchase for accounting purposes. Consequently, the operating results of ChemGenics have been included in the Company's financial statements from the date of acquisition, and the fair value of the issued shares has been allocated to the assets purchased and liabilities assumed based upon their respective fair values. The acquisition resulted in goodwill of $10.8 million, which is being amortized over a period of four years. Amortization expense recorded was $2.7 million in 1998 and $2.4 million in 1997. In connection with the acquisition, in 1997, the Company incurred a nonrecurring charge of $83.8 million for acquired in-process research and development which was charged to operations because, in management's opinion, technological feasibility for the acquired research and development had not been established. The following unaudited pro forma consolidated results of operations have been prepared as if the acquisition of ChemGenics had occurred at the beginning of 1997 and 1996:
Year ended December 31, 1997 December 31, 1996 (in thousands, except share and per share amounts) - ------------------------------------------------------------------------------------------------------- Pro Forma: Revenues under strategic alliances $ 90,426 $ 35,337 Net loss $ (82,386) $ (107,171) Net loss per share $ (2.86) $ (4.05) Shares used in calculating net loss per share 28,860,068 26,480,582
The pro forma net loss and net loss per share amounts for each period above include the acquired in-process research and development charge. The pro forma consolidated results do not purport to be indicative of results that would have occurred had the acquisition been in effect for the periods presented, nor do they purport to be indicative of the results that will be obtained in the future. [5] REVENUES -- STRATEGIC ALLIANCES The Company has formed strategic alliances with major participants in marketplaces where its discovery expertise and technology platform are applicable. These agreements include alliances based on the transfer of the Company's technology platform, alliances, which combine technology transfer with a focus on a specific disease or therapeutic approach, and disease-focused programs under which the Company conducts research funded by its partners. The Company's disease-based alliances and alliances which combine technology-transfer with a disease focus are generally structured as research collaborations. Under these arrangements, the Company performs research in a specific disease area aimed at discoveries leading to novel pharmaceutical (small molecule) products. These alliances generally provide research funding over an initial period, with renewal provisions, which vary by agreement. Under these agreements, the Company's partners are required to make additional payments upon the achievement of 20 specific research and product development milestones, and will pay royalties or in some cases profit-sharing payments to the Company based upon any product sales resulting from the collaboration. ALLIANCES BEGINNING IN 1998 In September 1998, the Company entered into a strategic alliance with Bayer AG ("Bayer"). In November 1998, Bayer made an equity investment of $96.6 million for approximately 4.96 million shares of Millennium Common Stock. In addition, Bayer paid $33.4 million as an up-front licensing fee. The primary goal of the alliance is for the Company to supply 225 drug targets to Bayer over a period of five years. These targets will be identified as relevant for cardiovascular disease, areas of oncology not covered by Millennium's alliance with Lilly, osteoporosis, pain, liver fibrosis, hematology and viral infections. Future payments which may be made over the full alliance term include $219 million of ongoing license and research program funding, as well as a potential of up to $116 million of performance payments for delivery of targets. Bayer has the right to cancel the agreement after two and three years if certain minimum target delivery objectives are not met. ALLIANCES BEGINNING IN 1997 In October 1997, the Company entered into a technology transfer alliance through a collaborative agreement with Monsanto Company ("Monsanto"). Under this agreement, the Company granted to Monsanto exclusive rights to its technologies in the field of plant agriculture, as well as a nonexclusive license to its technologies outside the plant agriculture field. The Company has agreed to collaborate exclusively with Monsanto in the application of those technologies through the establishment of a subsidiary wholly owned by Monsanto. Monsanto agreed to pay $118 million in up-front, licensing and technology transfer fees over the five-year term of the agreement. Monsanto may also pay the Company up to $100 million over five years, contingent upon the achievement of mutually agreed-upon research objectives. Millennium will also receive royalty payments from the sale of products, if any, originating from the research conducted by the Monsanto subsidiary. Millennium realized $38.2 million in revenues associated with technology transfer and license fees, achievement of mutually agreed-upon research objectives, and administrative services under the agreement in 1998, and $38.0 million in revenues as an up-front payment in 1997. In May 1997, the Company, through MBio, entered into a collaborative agreement with Lilly in connection with its program to discover and develop therapeutic proteins. The agreement covers an initial three-year period during which Lilly is providing $8-$10 million annually in research funding, with a two-year renewal option at the same funding level. Under the terms of the agreement, MBio and Lilly are jointly funding the collaborative program and each company will share the rights to use and commercialize the resulting discoveries. Additional licensing fees, development milestones and royalties will be payable by Lilly in connection with specific therapeutic protein product candidates identified through the collaboration and licensed by Lilly. MBio recorded approximately $9.1 million in revenues under this alliance in 1998 and $5.5 million under this alliance in 1997. Through its merger with ChemGenics, the Company became engaged in an alliance with the Wyeth-Ayerst Division of American Home Products ("AHP") to discover and develop antibacterial drugs for human use, as well as a collaboration with Pfizer, Inc. ("Pfizer") to discover and develop antifungal treatments for human use. Under the terms of the AHP agreement, as amended in 1997, AHP is funding and collaborating with the Company over a five-year period ending in December 2001. AHP has the right to terminate the agreement in November 1999 if certain research objectives are not met. Under the terms of the Pfizer agreement, as amended in 1997 and 1998, Pfizer is funding a discovery program that is scheduled to conclude in December 2000. ALLIANCES BEGINNING BEFORE 1997 21 In July 1996, the Company entered into a strategic alliance with AHP to discover and develop targets and assays to identify and develop small molecule drugs and vaccines for treatment and prevention of disorders of the central nervous system. In addition, this agreement provides for the license and transfer of certain technology to AHP. If certain specified research objectives are not met, AHP may terminate the agreement in September of 1999, 2000 or 2001. In December 1995, the Company entered into a strategic alliance with Astra AB ("Astra") in the field of inflammatory respiratory diseases. Under the agreement, as amended in December 1998, Astra will continue to fund a discovery program in inflammatory respiratory diseases for a four-year period concluding in December 2002. Astra has the right to terminate the agreement in December 2000, and will be obligated to provide an early termination payment if it exercises the early termination right. In October 1995, the Company entered into a strategic alliance with Lilly in the field of atherosclerosis. Under the terms of this agreement, Lilly purchased $8 million of Series C Convertible Preferred Stock, subsequently converted into 1,333,333 shares of Common Stock. The Lilly alliance included an option permitting Lilly to fund research in other fields. Effective March 1996, Lilly exercised this option and entered into a strategic alliance with the Company in select areas of oncology. In December 1998, the Company and Lilly amended certain terms of the oncology alliance and Lilly agreed to extend the program through March 2001. In March 1994, the Company entered into a five-year strategic alliance with Hoffmann-La Roche Inc. ("Roche") in the fields of obesity and type 2 diabetes. Under the terms of a related stock purchase agreement, an affiliate of Roche purchased $6 million of Series B Convertible Preferred Stock, subsequently converted into 2,000,000 shares of Common Stock. This alliance is expected to conclude in March 1999. [6] MARKETABLE SECURITIES Marketable securities consist of high-grade corporate bonds, which are carried at fair value, with the unrealized gains and losses reported in a separate component of stockholders' equity. There have been no realized gains or losses on sales of any securities in 1998, 1997 or 1996. The amortized cost and estimated fair value of debt securities at December 31, by contractual maturity, are shown below ($ in thousands):
1998 1997 - ------------------------------------------------------------------------------ ESTIMATED ESTIMATED COST FAIR VALUE COST FAIR VALUE - ------------------------------------------------------------------------------ Due in one year or less $37,406 $37,435 $27,325 $27,321 Due in one year to two years 15,245 15,245 -- -- --------------------------------------------- $52,651 $52,680 $27,325 $27,321 - ------------------------------------------------------------------------------
22 [7] PROPERTY AND EQUIPMENT Property and equipment consists of the following at December 31 ($ in thousands):
1998 1997 - ------------------------------------------------------------------------------------- Equipment $52,921 $37,452 Leasehold improvements and construction in progress 9,779 4,576 - ------------------------------------------------------------------------------------- 62,700 42,028 Less accumulated depreciation and amortization 24,530 12,998 - ------------------------------------------------------------------------------------- $38,170 $29,030
[8] COMMITMENTS LEASE COMMITMENTS The Company conducts the majority of its operations in leased facilities with leased equipment. At December 31, 1998 and 1997, respectively, the Company has capitalized leased equipment totaling $46.4 million and $33.5 million, with related accumulated amortization of $21.2 million and $12.0 million. The Company leases its laboratory and office space under operating lease agreements with various terms and renewal options, including major facilities with lease expirations in 2003, 2013 and 2014. One of these facilities was under construction during 1998, and is expected to be occupied in the first quarter of 1999. In addition to minimum lease commitments, these lease agreements require the Company to pay its pro rata share of property taxes and building operating expenses. At December 31, 1998, the Company has pledged $10.8 million of marketable securities as security for three letters of credit for the same amount with the purpose of securing leased facilities. At December 31, 1998, future minimum commitments under leases with noncancelable terms of more than one year are as follows ($ in thousands):
CAPITAL OPERATING LEASES LEASES - ------------------------------------------------------------------------------------------------------------- Year: 1999 $10,378 $ 15,163 2000 9,922 14,892 2001 9,115 14,133 2002 6,377 13,093 2003 3,306 12,891 Thereafter 340 101,574 ------------------------ Total 39,438 $171,746 Less amount representing interest 5,954 ------- Present value of minimum lease payments 33,484 Less current portion of capital lease obligations 8,657 ------- Capital lease obligations $24,827 - ---------------------------------------------------------------------------------------------------------------
23 Total rent expense was $8.5 million in 1998, $4.2 million in 1997 and $2.4 million in 1996. Sublease rental income in the amount of $0.4 million was recorded in 1998. Interest paid under all financing and leasing arrangements during 1998, 1997 and 1996 approximated interest expense. EXTERNAL COLLABORATIONS In April 1997, the Company joined a corporate consortium with Affymetrix Inc. and Bristol-Myers Squibb to fund a five-year research program in functional genomics at the Whitehead Institute for Biomedical Research. Under this agreement, the Company receives certain licensing rights to developments arising from the consortium. In addition, the Company funds research efforts of various academic collaborators in connection with its research and development programs. Total future fixed commitments under these agreements are approximately $6.4 million in 1999, $3.4 million in 2000, $2.6 million in 2001 and $1.3 million in 2002. [9] STOCKHOLDERS' EQUITY PREFERRED STOCK The Company has 5,000,000 authorized shares of Preferred Stock, $0.001 par value, issuable in one or more series, each of such series to have such rights and preferences, including voting rights, dividend rights, conversion rights, redemption privileges and liquidation preferences, as shall be determined by the Board of Directors. COMMON STOCK WARRANTS At December 31, 1998, the Company has outstanding exercisable warrants to purchase 357,470 shares of Common Stock with a weighted-average exercise price of $3.49 per share, which expire through 2004. STOCK OPTION PLANS The 1993 Incentive Stock Plan (the 1993 Plan) allows for the granting of incentive and nonstatutory options to purchase up to 5,400,000 shares of Common Stock. Incentive options granted to employees generally vest over a four-year period. Nonstatutory options granted to consultants and other nonemployees generally vest over the period of service to the Company. In December 1995, the Company amended the terms of outstanding option agreements to allow option holders the right to immediately exercise outstanding options, with the subsequent share issuances being subject to a repurchase option by the Company under certain conditions according to the original option vesting schedule and exercise price. At December 31, 1998, 173,548 shares issued under the 1993 Plan are subject to the Company's repurchase option. The 1996 Equity Incentive Plan (the 1996 Plan) effectively succeeded the 1993 Plan. The terms and conditions of the 1996 Plan are substantially consistent with those of the 1993 Plan and provide for the granting of options to purchase 4,100,000 shares of Common Stock, effective March 13, 1997. The 1996 Director Option Plan (the Director Plan) provides that, upon adoption, each then-eligible nonemployee director be granted a nonstatutory option to purchase 20,000 shares of Common Stock. Thereafter, each new nonemployee director will be granted a nonstatutory option to purchase 30,000 shares of Common Stock upon election to the Board of Directors. Upon completion of the vesting of each option grant under the Director Plan, each nonemployee director will be granted a new nonstatutory option to purchase 20,000 shares of Common Stock. All options will be issued at the then fair market value of the Common Stock, vest ratably over four years and expire ten years after date of grant. A total of 250,000 shares of Common Stock have been reserved for issuance under the Director Plan. 24 Under the Employee Stock Purchase Plan (the Stock Purchase Plan), eligible employees may purchase Common Stock at a price per share equal to 85% of the lower of the fair market value of the Common Stock at the beginning or end of each offering period. Participation in the offering is limited to 10% of the employee's compensation or $25,000 in any calendar year. The first offering period began on October 1, 1996. A total of 350,000 shares of Common Stock have been reserved for issuance under the Purchase Plan. At December 31, 1998, subscriptions were outstanding for an estimated 42,000 shares at $13.28 per share. In March 1997, the Board of Directors adopted the Company's 1997 Equity Incentive Plan (the 1997 Plan) covering 2,000,000 shares of Common Stock. The terms and conditions of the 1997 Plan are substantially consistent with those of the 1993 Plan and the 1996 Plan. In 1994, the Company granted its chief executive officer an option to purchase 533,364 shares of Common Stock for $0.30 per share. In connection with the grant, the Company agreed to provide a loan of up to $267,000 at 7% per annum upon option exercise. In November 1995, the officer exercised this option. The Company made the loan and issued the Common Stock, subject to a repurchase option that lapses over four years. The loan and related interest, secured by a pledge of the shares issued, are being forgiven ratably over 48 months subject to the officer's continued employment. During 1995 and 1996, the Company granted options to purchase 1,580,682 shares of Common Stock at exercise prices below the deemed fair value for accounting purposes of the stock options at the date of grant. The Company recorded an increase to additional paid-in capital and a corresponding charge to deferred compensation in the amount of approximately $3.5 million to recognize the aggregate difference between such deemed fair value and the exercise price. The deferred compensation is being amortized over the option vesting period of four years. The following table presents the combined activity of the 1993 Plan, 1996 Plan, 1997 Plan and the Director Plan for the years ended December 31, 1998, 1997 and 1996: 1998 1997 1996 - ----------------------------------------------------------------------------------------------------------------------------- WEIGHTED- WEIGHTED- WEIGHTED- AVERAGE AVERAGE AVERAGE EXERCISE PRICE EXERCISE PRICE EXERCISE PRICE SHARES SHARES SHARES - ----------------------------------------------------------------------------------------------------------------------------- Outstanding at January 1 5,463,635 $12.92 2,762,156 $ 9.19 2,724,261 $ .24 Granted 1,897,365 $18.77 3,436,163 $14.79 2,497,958 $10.23 Exercised (693,618) $ 5.85 (338,903) $ 3.46 (2,398,265) $ .29 Canceled (554,187) $17.35 (395,781) $11.49 (61,798) $ 2.42 -------------------------------------------------------------------------------- Outstanding at December 31 6,113,195 $15.13 5,463,635 $12.92 2,762,156 $ 9.19 - -------------------------------------------------------------------------------------------------------------------------- Options exercisable at December 31 2,435,654 $11.51 1,821,654 $ 5.91 1,251,982 $ 1.78 - --------------------------------------------------------------------------------------------------------------------------
The weighted-average per share fair value of options granted during 1998, 1997 and 1996 was $10.96, $14.79 and $6.01, respectively. 25 The following table presents weighted-average price and life information about significant option groups outstanding at December 31, 1998 for the above plans:
OPTIONS OUTSTANDING OPTIONS EXERCISABLE - ------------------------------------------------------------------------------------------------------------- WEIGHTED- AVERAGE REMAINING WEIGHTED- WEIGHTED- CONTRACTUAL AVERAGE AVERAGE RANGE OF EXERCISE LIFE EXERCISE EXERCISE PRICES NUMBER (YRS.) PRICE NUMBER PRICE - ------------------------------------------------------------------------------------------------------------- $0.10-$12.00 1,024,078 6.64 $ 2.53 893,625 $ 1.86 $12.63-$15.75 1,097,338 8.54 $14.62 405,373 $14.49 $16.00-$16.75 1,047,853 8.32 $16.53 421,291 $16.53 $17.00-$18.88 1,571,461 8.97 $18.22 348,893 $17.97 $19.00-$21.00 1,019,945 8.55 $19.78 346,256 $19.75 $21.75-$22.38 352,520 9.54 $21.96 20,216 $22.16 - ------------------------------------------------------------------------------------------------------- 6,113,195 2,435,654
At December 31, 1998, 7,060,823 shares of Common Stock were reserved for issuance upon exercise of stock options and warrants. In May 1997, the Board of Directors of MBio adopted the MBio 1997 Equity Incentive Plan (the MBio 1997 Plan). The plan as amended allows for the granting of incentive and nonstatutory options to purchase up to 1,500,000 shares of common stock of MBio. Incentive options granted to employees generally vest over a four-year period and may be exercised sooner subject to stock repurchase provisions that vest over the same period as the original option grant. Nonstatutory options granted to consultants and other nonemployees generally vest over the period of service. In November 1997, the Board of Directors of MPMx adopted the MPMx 1997 Equity Incentive Plan (the MPMx Plan). In April 1998, the Board of Directors of MInfo adopted the MInfo 1998 Equity Incentive Plan (the MInfo Plan). Both plans allow for the granting of incentive and nonstatutory options to purchase up to 1,200,000 shares of common stock of each subsidiary. Incentive options granted to employees generally vest over a four-year period and may be exercised sooner subject to stock repurchase provisions that vest over the same period as the original option grant. Nonstatutory options granted to consultants and other nonemployees generally vest over the period of service. In connection with the merger of MPMx and MInfo in January 1999, options issued under the MInfo plan were canceled, and employees were granted options to purchase shares of MPMx. The MPMx Plan was amended to increase the number of shares reserved to 2,200,000. Through December 31, 1998, the MBio 1997 Plan, the MPMx 1997 Plan and the MInfo 1998 Plan granted a combined 3,078,539 options to purchase common shares of these subsidiaries at a weighted exercise price of $0.44 per share. During 1998, options for 2,103,248 shares at a weighted exercise price of $0.43 per share were exercised, and options for 41,281 shares at a weighted exercise price of $0.52 per share were canceled. At December 31, 1998, options for 934,010 shares at a weighted-average exercise price of $0.47 per share were outstanding and exercisable, and 1,574,062 shares are subject to the plan's repurchase option. 26 The following table presents weighted-average price and life information about significant option groups outstanding at December 31, 1998 for the MBio and MPMx plans:
OPTIONS OUTSTANDING AND EXERCISABLE - ------------------------------------------------------------------------ WEIGHTED- WEIGHTED-AVERAGE AVERAGE EXERCISE REMAINING PRICE EXERCISE CONTRACTUAL LIFE PRICES NUMBER (YRS.) - ------------------------------------------------------------------------ $.05 497,210 9.14 $.05 $.90-$ 1.10 436,800 9.14 $.95 - ------------------------------------------------------------------------ 934,010 $.47
SFAS NO. 123 DISCLOSURES Pursuant to the requirements of SFAS No. 123, the following are the pro forma consolidated net income (loss) and consolidated net income (loss) per share for 1998, 1997 and 1996 as if the compensation cost for the stock option and stock purchase plans had been determined based on the fair value at the grant date for grants in 1998, 1997 and 1996 (in thousands, except per-share data):
1998 1997 1996 - ----------------------------------------------------------------------------------------------------------------------- AS REPORTED PRO AS REPORTED PRO AS REPORTED PRO FORMA FORMA FORMA - ----------------------------------------------------------------------------------------------------------------------- Net income (loss) $10,338 $(6,782) $(81,222) $(94,668) $(8,768) $(12,096) Basic net income (loss) per share 0.34 (0.22) (2.87) (3.34) (0.40) (0.54) Diluted net income (loss) per share 0.33 (0.22) (2.87) (3.34) (0.40) (0.54)
The fair value of stock options and common shares issued pursuant to the Stock Option and Stock Purchase Plans at the date of grant were estimated using the Black-Scholes model with the following weighted-average assumptions:
STOCK OPTIONS STOCK PURCHASE PLAN - --------------------------------------------------------------------------------------------------------------------- 1998 1997 1996 1998 1997 1996 - --------------------------------------------------------------------------------------------------------------------- Expected life (years) 4.4 4.5 3.7 .5 .5 .5 Interest rate 5.36% 6.12% 5.94% 5.15% 6.14% 6.14% Volatility .7 .7 .7 .7 .7 .7
The Company has never declared dividends on any of its capital stock and does not expect to do so in the foreseeable future. 27 The effects on 1996, 1997 and 1998 pro forma net income (loss) and net income (loss) per share of expensing the estimated fair value of stock options and common shares issued pursuant to the Stock Option and Stock Purchase Plans are not necessarily representative of the effects on reported results of operations for future years as the periods presented include only two, three and four years, respectively, of option grants and share purchases under the Company's plans. [10] INCOME TAXES The difference between the Company's "expected" tax provision (benefit), as computed by applying the U.S. federal corporate tax rate of 34% to income (loss) before minority interest and provision for income taxes, and actual tax is reconciled in the following chart ($ in thousands):
1998 1997 1996 - --------------------------------------------------------------------------------------------------------------- Loss before minority interest $(3,841) $(84,632) $(8,768) - --------------------------------------------------------------------------------------------------------------- Expected tax benefit at 34% $(1,306) $(28,774) $(2,981) State tax benefit net of federal benefit (231) (5,078) (526) Write off of purchased research and development -- 33,520 -- Amortization of goodwill 1,081 958 -- Change in valuation allowance for deferred tax assets allocated to tax expense (458) (1,019) 3,492 Stock compensation expense 788 361 Nondeductible expenses 126 32 15 - -------------------------------------------------------------------------------------------------------------- Income tax provision $ -- $ -- $ --
At December 31, 1998, the Company has unused net operating loss carryforwards of approximately $16.5 million available to reduce federal and state taxable income, and research and development tax credits of approximately $12.7 million available to offset federal and state income taxes, both of which expire through 2013. Due to the degree of uncertainty related to the ultimate use of the loss carryforwards and tax credits, the Company has fully reserved these tax benefits. Deferred income taxes reflect the net tax effects of temporary differences between the carrying amounts of assets and liabilities for financial reporting purposes and the amounts used for income tax purposes. Significant components of the Company's deferred tax assets as of December 31 are as follows ($ in thousands):
1998 1997 - --------------------------------------------------------------------------------------------------------------- Net operating loss carryforwards $ 6,556 $ 5,758 Research and development tax credit carryforwards 12,720 6,422 Capitalized research costs 5,875 7,640 Property and other intangible assets 3,310 1,315 Other 1,739 1,255 - --------------------------------------------------------------------------------------------------------------- Total deferred tax assets 30,200 22,390 Valuation allowance (30,200) (22,390) - --------------------------------------------------------------------------------------------------------------- Net deferred tax assets $ -- $ --
28 The valuation allowance increased by $7.8 million during 1998 due primarily to the increase in research and development tax credits and of net operating loss carryforwards. The valuation allowance increased by $12.7 million during 1997 due primarily to the increase in research and development tax credits and the addition of various deferred tax assets related to the ChemGenics merger offset by the utilization of net operating loss carryforwards. The deferred tax assets acquired from ChemGenics are subject to review and possible adjustments by the Internal Revenue Service and may be limited due to the change in ownership provisions of the Internal Revenue Code. Any subsequently recognized tax benefits relating to the valuation allowance for deferred tax assets as of December 31, 1998 would be allocated as follows ($ in thousands): Reported in the statement of operations $27,420 Reported in additional paid-in capital 2,780 - ----------------------------------------------------------- $30,200 =======
EX-21 7 SUBSIDIARIES OF THE REGISTRANT 1 EX - 21 SUBSIDIARIES OF THE REGISTRANT EXHIBIT 21 SUBSIDIARIES OF MILLENNIUM PHARMACEUTICALS, INC. NAME OF SUBSIDIARY JURISDICTION OF ORGANIZATION Millennium BioTherapeutics, Inc. Delaware Millennium Predictive Medicine, Inc. Delaware Millennium Information, Inc. (1) Delaware (1) In January 1999, Millennium Information, Inc. was merged with Millennium Predictive Medicine, Inc. Millennium Predictive Medicine, Inc. was the surviving corporation of the merger. EX-23.1 8 CONSENT OF ERNST & YOUNG LLP 1 EXHIBIT 23.1 CONSENT OF ERNST & YOUNG LLP, INDEPENDENT AUDITORS We consent to the incorporation by reference in this Annual Report (Form 10-K) of Millennium Pharmaceuticals, Inc. of our report dated February 8, 1999, included in the 1998 Annual Report to Stockholders of Millennium Pharmaceuticals, Inc. We also consent to the incorporation by reference in the Registration Statements (Form S-8 No. 333-15355) pertaining to the 1993 Incentive Stock Option Plan, (Forms S-8 Nos. 333-15353 and 333-29321), pertaining to the 1996 Equity Incentive Plan, (Form S-8 No. 333-15349), pertaining to the 1996 Director Option Plan, (Form S-8 No. 333-15357), pertaining to the 1996 Employee Stock Purchase Plan, (Form S-8 No. 333-29319), pertaining to the 1997 Equity Incentive Plan, and (Form S-3 No. 333-28239) of Millennium Pharmaceuticals, Inc. of our report dated February 8, 1999, with respect to the consolidated financial statements of Millennium Pharmaceuticals, Inc. incorporated herein by reference in the Annual Report (Form 10-K) for the year ended December 31, 1998. /s/ Ernst & Young LLP Boston, Massachusetts March 18, 1999 EX-27 9 FINANCIAL DATA SCHEDULE
5 1,000 US DOLLARS YEAR DEC-31-1998 JAN-01-1998 DEC-31-1998 1 138,284 52,680 6,660 0 0 202,657 62,700 (24,530) 257,954 24,262 0 0 0 35 206,327 257,954 0 133,682 0 141,311 0 0 2,410 10,338 0 10,338 0 0 0 10,338 .34 .33
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