S-3 S-3 EX-FILING FEES 0001640266 Voyager Therapeutics, Inc. N/A N/A 0.0001381 0.0001381 0.0001381 0.0001381 0.0001381 0.0001381 0.0001381 0.0001381 0001640266 2025-11-10 2025-11-10 0001640266 1 2025-11-10 2025-11-10 0001640266 2 2025-11-10 2025-11-10 0001640266 3 2025-11-10 2025-11-10 0001640266 4 2025-11-10 2025-11-10 0001640266 5 2025-11-10 2025-11-10 0001640266 6 2025-11-10 2025-11-10 0001640266 7 2025-11-10 2025-11-10 0001640266 8 2025-11-10 2025-11-10 0001640266 9 2025-11-10 2025-11-10 0001640266 10 2025-11-10 2025-11-10 0001640266 11 2025-11-10 2025-11-10 0001640266 12 2025-11-10 2025-11-10 0001640266 13 2025-11-10 2025-11-10 0001640266 14 2025-11-10 2025-11-10 0001640266 15 2025-11-10 2025-11-10 0001640266 16 2025-11-10 2025-11-10 0001640266 17 2025-11-10 2025-11-10 iso4217:USD xbrli:pure xbrli:shares

Calculation of Filing Fee Tables

S-3

Voyager Therapeutics, Inc.

Table 1: Newly Registered and Carry Forward Securities ☐Not Applicable

Security Type

Security Class Title

Fee Calculation or Carry Forward Rule

Amount Registered

Proposed Maximum Offering Price Per Unit

Maximum Aggregate Offering Price

Fee Rate

Amount of Registration Fee

Carry Forward Form Type

Carry Forward File Number

Carry Forward Initial Effective Date

Filing Fee Previously Paid in Connection with Unsold Securities to be Carried Forward

Newly Registered Securities
Equity Common Stock, par value $0.001 per share 457(o)
Equity Preferred Stock, par value $0.001 per share 457(o)
Debt Debt Securities 457(o)
Other Depositary Shares 457(o)
Other Subscription Rights 457(o)
Other Warrants 457(o)
Other Purchase Contracts 457(o)
Other Units 457(o)
Fees to be Paid 1 Unallocated (Universal) Shelf 457(o) $ 199,999,999.01 0.0001381 $ 27,620.00
Fees Previously Paid
Carry Forward Securities
Carry Forward Securities Equity Common Stock, par value $0.001 per share 415(a)(6) S-3 333-268240 11/15/2022
Carry Forward Securities Equity Preferred Stock, par value $0.001 per share 415(a)(6) S-3 333-268240 11/15/2022
Carry Forward Securities Debt Debt Securities 415(a)(6) S-3 333-268240 11/15/2022
Carry Forward Securities Other Subscription Rights 415(a)(6) S-3 333-268240 11/15/2022
Carry Forward Securities Other Warrants 415(a)(6) S-3 333-268240 11/15/2022
Carry Forward Securities Other Purchase Contracts 415(a)(6) S-3 333-268240 11/15/2022
Carry Forward Securities Other Units 415(a)(6) S-3 333-268240 11/15/2022
Carry Forward Securities 2 Unallocated (Universal) Shelf 415(a)(6) $ 200,000,000.99 S-3 333-268240 11/15/2022 $ 22,040.00

Total Offering Amounts:

$ 400,000,000.00

$ 27,620.00

Total Fees Previously Paid:

$ 0.00

Total Fee Offsets:

$ 0.00

Net Fee Due:

$ 27,620.00

Offering Note

1

Pursuant to Instruction 2.A(iii)(b) of Item 16(b) of Form S-3, this information is not required to be included. An indeterminate amount of the securities of each identified class is being registered as may from time to time be offered under this registration statement at indeterminate prices, along with an indeterminate number of securities that may be issued upon exercise, settlement, exchange or conversion of securities offered or sold under this registration statement, as shall have an aggregate initial offering price up to $400,000,000. Pursuant to Rule 416 under the Securities Act of 1933, as amended (the "Securities Act"), this registration statement also covers any additional securities that may be offered or issued in connection with any stock split, stock dividend or pursuant to anti-dilution provisions of any of the securities. Separate consideration may or may not be received for securities that are issuable upon conversion, exercise or exchange of other securities. In addition, the total amount to be registered and the proposed maximum offering price are estimated solely for the purpose of calculating the registration fee pursuant to Rule 457(o) under the Securities Act. Each depositary share will be issued under a deposit agreement, will represent an interest in a fractional share or multiple shares of preferred stock and will be evidenced by a depositary receipt. The subscription rights to purchase shares of common stock or preferred stock or other securities will be offered without additional consideration. The warrants covered by this registration statement may be warrants for common stock, preferred stock, depositary shares or debt securities issued by the registrant. The registrant may offer warrants separately or together with one or more additional warrants, common stock, preferred stock, depositary shares, or debt securities, or any combination of those securities in the form of units. The purchase contracts will be issued separately or as a part of units consisting of a purchase contract and either shares of common stock, shares of preferred stock, debt securities, debt obligations of third parties securing the holder's obligations to purchase the securities under the share purchase contracts or the rights to purchase any securities under this registration statement. Units may be issued under a unit agreement and will represent an interest in one or more securities registered under this registration statement including shares of common stock or preferred stock, debt securities, depositary shares, subscription rights, warrants or purchase contracts, in any combination, which may or may not be separable from one another.

2

Pursuant to Rule 415(a)(6) under the Securities Act, the securities registered pursuant to this registration statement include $200,000,000.99 of unsold securities (the "Unsold Securities") previously registered pursuant to the registration statement on Form S-3 (File No. 333-268240), which became effective with the U.S. Securities and Exchange Commission (the "SEC") on November 15, 2022 (the "Prior Registration Statement"). The Unsold Securities consist of (x) $75,000,000.00 of unsold common stock pursuant to the sales agreement prospectus included in the Prior Registration Statement and (y) $125,000,000.99 of unsold securities previously registered pursuant to the Prior Registration Statement. In connection with the filing of the Prior Registration Statement, the registrant paid an aggregate filing fee of $22,040.00 associated with the offering of the Unsold Securities (based on the filing fee rate in effect at the time of the filing of the Prior Registration Statement). The filing fee associated with the offering of the Unsold Securities is hereby carried forward to be applied to the Unsold Securities registered hereunder, and no additional filing fee is due with respect to the Unsold Securities in connection with the filing of this Registration Statement. The registrant is also registering new securities on this registration statement with an aggregate initial offering price of $199,999,999.01 (the "New Securities"), which aggregate offering price is not specified as to each class of securities. A filing fee of $27,620.00 with respect to the New Securities is being paid in connection with the filing of this registration statement. To the extent that, after the filing date hereof and prior to the effectiveness of this registration statement, the registrant sells any Unsold Securities pursuant to the Prior Registration Statement, the registrant will identify in a pre-effective amendment to this registration statement the updated number of Unsold Securities from the Prior Registration Statement to be included in this registration statement pursuant to Rule 415(a)(6) and the updated amount of new securities to be registered on this registration statement. Pursuant to Rule 415(a)(6), the offering of securities under the Prior Registration Statement will be deemed terminated as of the date of effectiveness of this registration statement.

Table 2: Fee Offset Claims and Sources ☑Not Applicable
Registrant or Filer Name Form or Filing Type File Number Initial Filing Date Filing Date Fee Offset Claimed Security Type Associated with Fee Offset Claimed Security Title Associated with Fee Offset Claimed Unsold Securities Associated with Fee Offset Claimed Unsold Aggregate Offering Amount Associated with Fee Offset Claimed Fee Paid with Fee Offset Source
Rules 457(b) and 0-11(a)(2)
Fee Offset Claims N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Fee Offset Sources N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Rule 457(p)
Fee Offset Claims N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Fee Offset Sources N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Table 3: Combined Prospectuses ☑Not Applicable

Security Type

Security Class Title

Amount of Securities Previously Registered

Maximum Aggregate Offering Price of Securities Previously Registered

Form Type

File Number

Initial Effective Date

N/A N/A N/A N/A N/A N/A N/A N/A