UNITED STATES

SECURITIES AND EXCHANGE COMMISSION

Washington, D.C. 20549

FORM 10-Q

(Mark One)

x QUARTERLY REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934

For the quarterly period ended March 31, 2013

OR

¨ TRANSITION REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934

For the transition period from                      to                     

Commission file number 0-02287

SYMMETRICOM, INC.

(Exact name of registrant as specified in our charter)

Delaware	No. 95-1906306
(State or Other Jurisdiction of Incorporation or Organization)	(I.R.S. Employer Identification No.)

2300 Orchard Parkway, San Jose, California 95131-1017

(Address of principal executive offices)

Registrant’s telephone number: (408) 433-0910

Indicate by check mark whether the registrant (1) has filed all reports required to be filed by Section 13 or 15(d) of the Securities Exchange Act of 1934 during the preceding 12 months (or for such shorter period that the registrant was required to file such reports), and (2) has been subject to such filing requirements for the past 90 days.    Yes  x    No  ¨

Indicate by check mark whether the registrant has submitted electronically and posted on its corporate Web site, if any, every Interactive Data File required to be submitted and posted pursuant to Rule 405 of Regulation S-T during the preceding 12 months (or for such shorter period that the registrant was required to submit and post such files).    Yes  x    No  ¨

Indicate by check mark whether the registrant is a large accelerated filer, an accelerated filer, a non-accelerated filer or a smaller reporting company. See the definitions of “large accelerated filer,” “accelerated filer” and “smaller reporting company” in Rule 12b-2 of the Exchange Act. (Check one):

Large accelerated filer	¨	Accelerated filer	x
Non-accelerated filer	¨  (Do not check if a smaller reporting company)	Smaller reporting company	¨

Indicate by check mark whether the registrant is a shell company (as defined in Rule 12b-2 of the Exchange Act).    Yes  ¨    No  x

Indicate number of shares outstanding of each of the issuer’s classes of common stock, as of the latest practical date:

Class	Outstanding as of April 28, 2013
Common Stock	40,982,073

SYMMETRICOM, INC.

FORM 10-Q

INDEX

		Page
PART I. FINANCIAL INFORMATION
Item 1.	Financial Statements:
	Condensed Consolidated Balance Sheets—March 31, 2013 and July 1, 2012		3
	Condensed Consolidated Statements of Operations—Three and nine months ended March 31, 2013 and April 1, 2012		4
	Condensed Consolidated Statements of Comprehensive Income (Loss)—Three and nine months ended March 31, 2013 and April 1, 2012		5
	Condensed Consolidated Statements of Cash Flows—Nine months ended March 31, 2013 and April 1, 2012		6
	Notes to Condensed Consolidated Financial Statements		7
Item 2.	Management’s Discussion and Analysis of Financial Condition and Results of Operations		19
Item 3.	Quantitative and Qualitative Disclosures About Market Risk		25
Item 4.	Controls and Procedures		25
PART II. OTHER INFORMATION
Item 1.	Legal Proceedings		26
Item 1A.	Risk Factors		26
Item 2.	Unregistered Sales of Equity Securities and Use of Proceeds		26
Item 3.	Defaults Upon Senior Securities		26
Item 4.	Mine Safety Disclosures		26
Item 5.	Other Information		26
Item 6.	Exhibits		27
SIGNATURES			28

2

PART I. FINANCIAL INFORMATION

Item 1. Financial Statements

SYMMETRICOM, INC.

CONDENSED CONSOLIDATED BALANCE SHEETS

(In thousands, except par value)

(Unaudited)

	March 31, 2013			July 1, 2012
ASSETS
Current assets:
Cash and cash equivalents	$	22,371		$	27,659
Short-term investments		47,351			39,280
Accounts receivable, net of allowance for doubtful accounts of $683 and $108		38,870			45,952
Inventories		47,195			47,618
Prepaids and other current assets		17,379			16,943
Total current assets		173,166			177,452
Property, plant and equipment, net		23,148			22,702
Intangible assets, net		3,519			3,458
Deferred taxes and other assets		28,898			27,413
Total assets	$	228,731		$	231,025
LIABILITIES AND STOCKHOLDERS’ EQUITY
Current liabilities:
Accounts payable	$	10,343		$	9,300
Accrued compensation		11,923			14,574
Accrued warranty		1,455			1,722
Other accrued liabilities		10,748			11,841
Total current liabilities		34,469			37,437
Long-term obligations		4,938			5,472
Deferred income taxes		334			334
Total liabilities		39,741			43,243
Commitments and contingencies (Note 10)
Stockholders’ equity:
Preferred stock, $0.0001 par value; 500 shares authorized, none issued		—			—
Common stock, $0.0001 par value; 70,000 shares authorized, 52,676 shares issued and 40,982 outstanding at March 31, 2013; 51,500 shares issued and 40,952 outstanding at July 1, 2012		195,821			193,478
Accumulated other comprehensive loss		(208	)		(232	)
Accumulated deficit		(6,623	)		(5,464	)
Total stockholders’ equity		188,990			187,782
Total liabilities and stockholders’ equity	$	228,731		$	231,025

See notes to the condensed consolidated financial statements.

3

SYMMETRICOM, INC.

CONDENSED CONSOLIDATED STATEMENTS OF OPERATIONS

(In thousands, except per share amounts)

(Unaudited)

	Three Months Ended						Nine Months Ended
	March 31, 2013			April 1, 2012			March 31, 2013			April 1, 2012
Net revenue	$	53,349		$	60,438		$	158,891		$	175,110
Cost of sales:
Cost of products and services		28,654			35,638			88,415			97,693
Acquisition-related costs		237			74			719			445
Restructuring charges		375			65			371			1,156
Total cost of sales		29,266			35,777			89,505			99,294
Gross profit		24,083			24,661			69,386			75,816
Operating expenses:
Research and development		8,291			7,129			24,409			20,575
Selling, general and administrative		14,593			14,281			45,598			43,955
Amortization of intangible assets		87			52			259			156
Restructuring charges		947			(76	)		2,148			123
Total operating expenses		23,918			21,386			72,414			64,809
Operating income (loss)		165			3,275			(3,028	)		11,007
Interest income, net of amortization (accretion) of premium (discount) on investments		98			225			240			(5	)
Income (loss) before taxes		263			3,500			(2,788	)		11,002
Income tax provision (benefit)		(556	)		1,296			(1,629	)		3,604
Net income (loss)	$	819		$	2,204		$	(1,159	)	$	7,398
Earnings (loss) per share:
Basic	$	0.02		$	0.05		$	(0.03	)	$	0.18
Diluted	$	0.02		$	0.05		$	(0.03	)	$	0.17
Shares used in computing earnings (loss) per share:
Weighted average shares outstanding - basic		40,502			41,795			40,456			42,258
Weighted average shares outstanding - diluted		40,956			42,615			40,456			42,937

See notes to the condensed consolidated financial statements.

4

SYMMETRICOM, INC.

CONDENSED CONSOLIDATED STATEMENTS OF COMPREHENSIVE INCOME (LOSS)

(In thousands)

(Unaudited)

	Three Months Ended					Nine Months Ended
	March 31, 2013			April 1, 2012		March 31, 2013			April 1, 2012
Net income (loss)	$	819		$	2,204	$	(1,159	)	$	7,398
Other comprehensive income (loss), net of taxes:
Foreign currency translation adjustments		(86	)		110		32			(126	)
Unrealized gain (loss) on investments		(10	)		41		(8	)		10
Other comprehensive income (loss)		(96	)		151		24			(116	)
Total comprehensive income (loss)	$	723		$	2,355	$	(1,135	)	$	7,282

See notes to the condensed consolidated financial statements.

5

SYMMETRICOM, INC.

CONDENSED CONSOLIDATED STATEMENTS OF CASH FLOWS

(In thousands)

(Unaudited)

	Nine Months Ended
	March 31, 2013			April 1, 2012
Cash flows from operating activities:
Net income (loss)	$	(1,159	)	$	7,398
Adjustments to reconcile net income (loss) to net cash provided by operating activities:
Depreciation and amortization		4,869			4,163
Deferred income taxes		(1,895	)		2,925
Loss on disposal of fixed assets		356			139
Stock-based compensation		5,250			4,581
Allowance for doubtful accounts		566			(102	)
Provision for excess and obsolete inventory		2,148			2,617
Changes in assets and liabilities:
Accounts receivable		6,516			205
Inventories		(1,725	)		3,219
Prepaids and other assets		799			(3,671	)
Accounts payable		621			(6,226	)
Accrued compensation		(2,651	)		(1,834	)
Other accrued liabilities		(2,244	)		(3,040	)
Net cash provided by operating activities		11,451			10,374
Cash flows from investing activities:
Purchases of short-term investments		(33,292	)		(20,171	)
Maturities/sale of short-term investments		24,500			26,816
Purchases of property, plant and equipment		(4,370	)		(3,152	)
Payment to acquire business and other assets		(702	)		(1,400	)
Remaining cash proceeds from sale of discontinued operations		—			210
Net cash provided by (used in) investing activities		(13,864	)		2,303
Cash flows from financing activities:
Proceeds from issuance of common stock		2,733			2,796
Repurchase of common stock		(5,640	)		(10,115	)
Net cash used in financing activities		(2,907	)		(7,319	)
Effect of exchange rate changes on cash		32			(126	)
Net increase (decrease) in cash and cash equivalents		(5,288	)		5,232
Cash and cash equivalents at beginning of period		27,659			20,318
Cash and cash equivalents at end of period	$	22,371		$	25,550
Non-cash investing and financing activities:
Unrealized gain (loss) on investments, net	$	(8	)	$	10
Property, plant and equipment purchases included in accounts payable		607			185
Unpaid Purchase consideration for acquired businesses		200			540
Cash payments for:
Income taxes		1,652			697

See notes to the condensed consolidated financial statements.

6

SYMMETRICOM, INC.

NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS

(Unaudited)

Note 1. Basis of Presentation and Recently Issued Accounting Pronouncements

The condensed consolidated financial statements of Symmetricom, Inc. (“Symmetricom,” “we,” “us,” the “Company,” or “our”) included herein are unaudited and reflect all adjustments (consisting only of normal recurring adjustments) which are, in the opinion of the management, necessary for a fair presentation of the financial position, results of operations, comprehensive income loss and cash flows for the interim periods presented. In presenting the financial statements in accordance with accounting principles generally accepted in the United States (US GAAP), management makes certain estimates and assumptions that impact the amounts reported and related disclosures. Estimates, by their nature, are judgments based upon available information. Accordingly, actual results could differ from those estimates.

These condensed consolidated financial statements should be read in conjunction with the consolidated financial statements and notes thereto included in Symmetricom’s Annual Report on Form 10-K for the fiscal year ended July 1, 2012. The results of operations for the three and nine months ended March 31, 2013 are not necessarily indicative of the results to be anticipated for the entire fiscal year ending June 30, 2013.

The condensed consolidated balance sheet as of July 1, 2012 has been derived from the audited consolidated financial statements as of that date but does not include all of the information and footnotes required by US GAAP for complete financial statements.

Fiscal Quarter

Our fiscal quarter is 13 weeks ending on the Sunday closest to the end of the calendar quarter.

Note 2. Financial Instruments

We account for certain assets and liabilities at fair value. The hierarchy below lists three levels of fair value based on the extent to which inputs used in measuring fair value are observable in the market. We categorize each of our fair value measurements in one of these three levels based on the lowest level input that is significant to the fair value measurement in its entirety. These levels are:

• Level 1—inputs are based upon unadjusted quoted prices for identical instruments traded in active markets;

• Level 2—inputs are based upon quoted prices for similar instruments in active markets, quoted prices for identical or similar instruments in markets that are not active, and model-based valuation techniques for which all significant assumptions are observable in the market or can be corroborated by observable market data for substantially the full term of the assets or liabilities; and

• Level 3—inputs are generally unobservable and typically reflect management’s estimates of assumptions that market participants would use in pricing the asset or liability. The fair values are therefore determined using model-based techniques that include option pricing models, discounted cash flow models, and similar techniques.

7

Financial assets measured at fair value on a recurring basis consisted of the following types of instruments as of March 31, 2013 and July 1, 2012:

	Fair Value as of March 31, 2013		Quoted prices in Active Markets Identical Assets (Level 1)		Significant Observable (Level 2)		Significant Other Unobservable (Level 3)
	(In thousands)
Assets:
Money market funds	$	7,641	$	7,641			$	—
Short-term investments:
Certificates of deposit		2,450		—		2,450
Corporate debt securities		33,819		—		33,819		—
Government sponsored enterprise debt securities		8,258		—		8,258		—
Mutual funds		2,824		2,824		—		—
Total short-term investments		47,351		2,824		44,527		—
Total financial assets	$	54,992	$	10,465	$	44,527	$	—
Liabilities:
Contingent consideration	$	650	$	—	$	—	$	650
Total financial liabilities	$	650	$	—	$	—	$	650
	Fair Value as of July 1, 2012		Quoted prices in Active Markets for Identical Assets (Level 1)		Significant Other Inputs (Level 2)		Significant Other Unobservable Inputs (Level 3)
	(In thousands)
Assets:
Money market funds	$	8,650	$	8,650	$	—	$	—
Short-term investments:
Corporate debt securities		23,703		—		23,703		—
Government sponsored enterprise debt securities		12,515		—		12,515		—
Mutual funds		3,062		3,062		—		—
Total short-term investments		39,280		3,062		36,218		—
Total financial assets	$	47,930	$	11,712	$	36,218	$	—
Liabilities:
Contingent consideration	$	540	$	—	$	—	$	540
Total financial liabilities	$	540	$	—	$	—	$	540

The fair values of our money market funds and mutual funds were derived from quoted market prices as active markets for these instruments exist. The fair values of certificates of deposit, corporate debt securities and government sponsored enterprise debt securities were derived from non-binding market consensus prices that are corroborated by observable market data.

The investments in mutual funds are held in a Rabbi trust to support the terms of our deferred compensation plan.

8

The following table summarizes available-for-sale and trading securities recorded as cash and cash equivalents or short-term investments:

	Amortized Cost		Gross Unrealized Gains (Losses)			Fair Value
March 31, 2013			(In thousands)
Money market funds	$	7,641	$	—		$	7,641
Certificates of deposit		2,450		—			2,450
Corporate debt securities		33,830		(11	)		33,819
Government sponsored enterprise debt securities		8,260		(2	)		8,258
Mutual funds		2,824		—			2,824
Total financial assets	$	55,005	$	(13	)	$	54,992

	Amortized Cost		Gross Unrealized Gains (Losses)			Fair Value
July 1, 2012			(In thousands)
Money market funds	$	8,650	$	—		$	8,650
Corporate debt securities		23,705		(2	)		23,703
Government sponsored enterprise debt securities		12,513		2			12,515
Mutual funds		3,062		—			3,062
Total financial assets	$	47,930	$	—		$	47,930

The following table summarizes the contractual maturities of fixed income securities (certificates of deposit, corporate debt securities and government sponsored enterprise debt securities) recorded as short-term investments as of March 31, 2013:

	Amortized Cost		Fair Value
	(In thousands)
Less than 1 year	$	19,518	$	19,521
Due in 1 to 3 years		25,022		25,006
Total	$	44,540	$	44,527

Actual maturities may differ from the contractual maturities because borrowers may have the right to call or prepay certain obligations.

Level 3 financial liability:

The following table reconciles the beginning and ending balances for Level 3 liabilities for the first nine months of 2013 (in thousands):

	Contingent consideration
Balance as of July 1, 2012	$	540
Add: Adjustment to present value of contingent consideration		110
Balance as of March 31, 2013	$	650

9

Contingent consideration on acquired business is measured at fair value on a recurring basis using Level 3 inputs as defined in the fair value hierarchy. The following table presents certain information about the significant unobservable inputs used in the fair value measurement for the contingent consideration measured at fair value on a recurring basis using significant unobservable inputs:

Description	Valuation Techniques	Significant Unobservable Inputs
Liabilities: Contingent consideration	Present value of a Probability Weighted Earnout model using an appropriate discount rate.	Estimate of future revenue associated with acquired technology. Revenue of $4.9 million over a range of 3.5 years to 4 years.

An increase in the revenue growth percentage could result in a significantly higher estimated fair value of the contingent consideration liability. Alternatively, a decrease in the revenue growth percentage could result in a significantly lower estimated fair value of contingent consideration liability.

The fair value of contingent consideration was derived from a probability weighted earn-out model of future contingent payments. The cash payments, if any, are expected to be made quarterly, based upon revenue generated from the acquired product line, starting in the fourth quarter of fiscal 2013. No payments were made in the first nine months of fiscal 2013. The valuation of this liability is estimated based upon a collaborative effort of the Company’s marketing and finance departments. These future contingent payments are calculated based on estimates of future revenue attributable to the acquired technology (Note 12). To obtain a current valuation of these projected cash flows, an expected present value technique is applied using an appropriate discount rate. The cash flow projections and discount rates will be reviewed quarterly and updated as and when necessary. Potential valuation adjustments will be made as future revenue projections are updated which affect the calculation of the related contingent consideration payments. These adjustments will be recorded in the condensed consolidated statement of operations.

10

Note 3. Inventories

Components of inventories were as follows:

	March 31, 2013		July 1, 2012
	(In thousands)
Raw materials	$	18,105	$	21,003
Work-in-process		11,524		10,440
Finished goods		17,566		16,175
Inventories	$	47,195	$	47,618

Note 4. Intangible Assets

Intangible assets consist of:

	Gross Carrying Amount		Accumulated Amortization			Net Intangible Assets
	(in thousands)
Purchased technology	$	26,871	$	(24,424	)	$	2,447
Customer lists and trademarks		7,303		(6,231	)		1,072
Total as of March 31, 2013	$	34,174	$	(30,655	)	$	3,519
Purchased technology	$	25,970	$	(23,845	)	$	2,125
Customer lists and trademarks		7,303		(5,970	)		1,333
Total as of July 1, 2012	$	33,273	$	(29,815	)	$	3,458

11

The estimated future amortization expense by fiscal year is as follows:

Fiscal year:	(in thousands)
2013 (Remaining 3 months)	$	296
2014		1,149
2015		776
2016		602
2017		295
Thereafter		401
Total amortization	$	3,519

Intangible asset amortization expense for the third quarter of fiscal 2013 and 2012 was $0.3 million and $0.1 million, respectively. Intangible asset amortization expense for the first nine months of fiscal 2013 and 2012 was $0.8 million and $0.6 million, respectively.

Note 5. Warranty

Changes in our accrued warranty liability were as follows:

	Three Months Ended						Nine Months Ended
	March 31, 2013			April 1, 2012			March 31, 2013			April 1, 2012
	(In thousands)						(In thousands)
Beginning balance	$	1,492		$	1,835		$	1,722		$	1,601
Provision for warranty		798			717			2,040			1,948
Accruals related to change in estimate		(164	)		54			(259	)		397
Less: Actual warranty costs		(671	)		(708	)		(2,048	)		(2,048	)
Ending balance	$	1,455		$	1,898		$	1,455		$	1,898

12

Note 6. Long-term Obligations

Long-term obligations consist of:

	March 31, 2013		July 1, 2012
	(In thousands)
Long-term obligations:
Deferred revenue	$	2,031	$	2,254
Lease loss accrual, net		895		1,240
Rent accrual		1,010		1,102
Post-retirement benefits		190		173
Income tax		216		216
Consideration for acquired businesses		596		487
Total	$	4,938	$	5,472

Note 7. Stockholders’ Equity

Stock Options and Awards Activity

Stock award activity for the nine months ended March 31, 2013 is as follows:

				Non Performance-based Options Outstanding					Restricted Stock Outstanding
	Shares Available For Grant			Number of Shares			Weighted Average Exercise Price Per Share		Number of Shares			Weighted Average Grant-Date Fair Value
	(In thousands, except per share amounts)
Balances at July 1, 2012		2,889			7,316		$	5.54		261		$	5.68
Amendment of 2006 Plan		2,000
Granted - options		(1,475	)		1,475			6.09
Granted - restricted shares		(522	)							261			6.12
Exercised					(602	)		4.43
Vested										(162	)		5.84
Cancelled		231			(231	)		5.81
Balances at March 31, 2013		3,123			7,958		$	5.71		360		$	5.93

On October 26, 2012 at our annual meeting of shareholders, the shareholders approved an amendment to the 2006 Incentive Award Plan that included an additional 2.0 million shares for future issuance.

13

Stock options outstanding, vested and expected to vest, and exercisable as of March 31, 2013 were as follows:

Options	Number of Shares		Weighted Average Remaining Contractual Life		Weighted Average Exercise Price		Aggregate Intrinsic Value
	(In thousands)		(In years)				(In thousands)
Outstanding		7,958		4.50	$	5.71	$	103
Vested and expected to vest		7,754		4.46	$	5.71	$	102
Exercisable		4,375		3.58	$	5.73	$	77

The aggregate intrinsic value in the preceding table represents the total pre-tax value of stock options outstanding as of March 31, 2013, based on our common stock closing price of $4.54 on March 28, 2013, which would have been received by the option holders had all option holders exercised their options as of that date.

The total intrinsic value of options exercised during the third quarter of fiscal 2013 and 2012 was approximately $0.5 million and $0.4 million, respectively.

For the third quarter of fiscal 2013 and 2012, the weighted-average estimated fair value of options granted was $2.56 and $2.57 per share, respectively. For the nine months ended March 31, 2013 and April 1, 2012, the weighted-average estimated fair value of options granted was $2.87 and $2.45 per share, respectively. Our calculations were made using the Black-Scholes option-pricing model. The fair value of Symmetricom stock-based awards to employees was estimated assuming no expected dividend and the weighted-average assumptions for the three and nine months ended March 31, 2013 and April 1, 2012 as follows:

	Three months ended						Nine Months ended
	March 31, 2013			April 1, 2012			March 31, 2012			April 1, 2012
Expected life (in years)		4.3			4.4			4.9			4.9
Risk-free interest rate		0.6	%		0.7	%		0.5	%		0.7	%
Volatility		56.7	%		56.9	%		56.8	%		56.4	%

We calculated the stock-based compensation expense in the third quarter of fiscal 2013 and 2012, using an estimated annual forfeiture rate of 4.6% and 6.6%, respectively. At March 31, 2013, the total cumulative compensation cost related to unvested stock-based awards granted to employees, directors and consultants under the Company’s stock option plans, but not yet recognized, was approximately $6.0 million, net of estimated forfeitures of $0.8 million. This cost will be amortized on an accelerated method basis over a period of approximately 1.3 years and will be adjusted for subsequent changes in estimated forfeitures.

14

The following table shows total stock-based compensation costs included in the condensed consolidated statements of operations:

	Three Months Ended				Nine Months Ended
	March 31, 2013		April 1, 2012		March 31, 2013		April 1, 2012
	(In thousands)				(In thousands)
Cost of sales	$	275	$	272	$	815	$	606
Research and development		306		312		984		896
Selling, general and administrative		1,209		1,154		3,451		3,079
Pre-tax stock-based compensation expense		1,790		1,738		5,250		4,581
Less: Income tax effect		662		643		1,943		1,695
Total	$	1,128	$	1,095	$	3,307	$	2,886

The above table includes expense of $0.1 million and $0.4 million, relating to the employee stock purchase plan (ESPP) for the third quarter and first nine months of both fiscal 2013 and 2012.

Performance Awards

In the second quarter of fiscal 2013, the Company communicated its intention to grant 103,000 shares of performance - based restricted stock to its executive management employees subject to the achievement of certain financial performance targets. The number of stock awards that will ultimately be granted depends on actual business performance measured for fiscal 2013 against certain targets for revenue and profitability for the Company’s business as well as continued employment with the Company.

In the second quarter of fiscal 2012, the Company had communicated its intention to grant 110,000 shares of performance - based restricted stock to its executive management employees. During the first quarter of fiscal 2013, 92,620 restricted shares were granted based on achievement against certain revenue and profitability targets.

Stock Repurchases

We repurchased 33,000 shares in the third quarter of fiscal 2013 for an aggregate price of approximately $0.2 million to cover the cost of employee income taxes on option exercises.

As of March 31, 2013, the total number of shares available for repurchase under the repurchase program authorized by the Board of Directors was approximately 1.9 million.

Note 8. Restructuring Charges

The following table shows the details of the restructuring cost accruals, which consist of facilities, severance costs, and consulting and outside services, at March 31, 2013 and July 1, 2012:

	July 1, 2012		Expense Additions			Payments			March 31, 2013
	(in thousands)
Lease loss accrual (fiscal 2004)	$	137	$	16		$	(31	)	$	122
All other restructuring changes (fiscal 2004)		68		30			(56	)		42
Lease loss accrual (fiscal 2009)		902		69			(231	)		740
All other restructuring changes (fiscal 2010)		75		(165	)		163			73
Lease loss accrual (fiscal 2011)		170		12			(38	)		144
Lease loss accrual (fiscal 2012)		698		34			(231	)		501
All other restructuring changes (fiscal 2012)		159		203			(360	)		2
All other restructuring changes (fiscal 2013)		—		2,320			(2,007	)		313
Total	$	2,209	$	2,517		$	(2,789	)	$	1,937

During the first nine months of fiscal 2013, we incurred approximately $2.5 million in severance, consulting, and outside service charges related to our reduction in work-force, reduction in facilities, and closing of research and development operations in China.

15

The lease loss accruals are subject to periodic revisions based on current market estimates. The lease loss accruals as of March 31, 2013 will be paid over the next three years.

Note 9. Net Income (Loss) Per Share

Basic earnings (loss) per share is computed by dividing net income (loss) by the weighted average number of common shares outstanding during the period. Diluted earnings (loss) per share is calculated by dividing net income (loss) by the weighted average number of common shares outstanding and common equivalent shares from dilutive stock options, employee stock purchase plan and restricted stock using the treasury stock method, except when antidilutive.

The following table reconciles the number of shares utilized in the net income (loss) per share calculations:

	Three Months Ended						Nine Months Ended
	March 31, 2013			April 1, 2012			March 31, 2013			April 1, 2012
	(In thousands, except per share amounts)
Numerator:
Net income (loss)	$	819		$	2,204		$	(1,159	)	$	7,398
Shares (denominator):
Weighted average common shares outstanding		40,862			42,056			40,816			42,494
Weighted average common shares outstanding subject to repurchase		(360	)		(261	)		(360	)		(236	)
Weighted average shares outstanding—basic		40,502			41,795			40,456			42,258
Weighted average dilutive share equivalents from stock options		338			741			—			578
Weighted average dilutive common shares subject to repurchase		116			79			—			101
Weighted average shares outstanding— diluted		40,956			42,615			40,456			42,937
Earnings (loss) per share:
Basic	$	0.02		$	0.05		$	(0.03	)	$	0.18
Diluted	$	0.02		$	0.05		$	(0.03	)	$	0.17

Unvested restricted stock is subject to repurchase by the Company and therefore is not included in the calculation of the weighted-average shares outstanding for basic earnings per share.

The following common stock equivalents were excluded from the earnings (loss) per share calculation as their effect would have been anti-dilutive:

	Three Months Ended				Nine Months Ended
	March 31, 2013		April 1, 2012		March 31, 2013		April 1, 2012
	(In thousands)				(In thousands)
Stock options		5,203		4,310		3,116		4,028
Common shares subject to repurchase		—		—		360		—
Total shares of common stock excluded from diluted net income (loss) per share calculation		5,203		4,310		3,476		4,028

Note 10. Litigation and Contingencies

Litigation—The Company is or was a party to the following material litigations:

Former Texas Facility Environmental Cleanup

We formerly leased a tract of land in Texas for our operations. Those operations involved the use of solvents and, at the end of the lease, we remediated an area where the solvents had been deposited on the ground and obtained regulatory approval for that remedial activity. In 1996, an environmental investigation of the property detected those same contaminants in groundwater in excess of then current regulatory standards. The groundwater contamination has migrated to some adjacent properties. We have entered into the Texas Natural Resource Conservation Commission’s Voluntary Cleanup Program (the “Voluntary Cleanup Program”) to obtain regulatory approval for closure of this site and a release from liability to the State of Texas for subsequent landowners and lenders. We have notified adjacent property owners affected by the contamination of participation in the Voluntary Cleanup Program. On May 20, 2004, we received a demand from the owner of several adjacent lots for damages in the amount of $1.3 million, as well as seeking an indemnity for the contamination and a promise to remediate the contamination. On March 14, 2006, the adjacent property owner filed suit in Probate Court No. 1, Travis County, Texas (Anna B. Miller, Individually and as Executrix of the Estate of Robert L. Miller, et al. vs. Austron, Inc., et al.), seeking damages. Symmetricom has not yet been served in this matter, but we intend to defend this lawsuit vigorously. We are continuing to work on the remediation of the formerly leased site as well as the adjacent properties, and have also taken steps to begin work on the Miller property. As of March 31, 2013, we had an accrual of $42,000 for remediation costs and other ongoing monitoring costs which has been included within “other accrued liabilities” on our condensed consolidated balance sheet.

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Michael E. McNeil, et al. vs. Jason Book, et al.

On or around May 25, 2010, Symmetricom was served with the first amended complaint in the case of Michael E. McNeil, et al. vs. Jason Book, et al. (Case No. CV165643) filed in Santa Cruz County Superior Court, California. The first amended complaint added Symmetricom and several other parties to the lawsuit, which had been originally filed in 2009 by plaintiffs against their former attorney for legal malpractice in connection with certain settlement agreements in 1999 between plaintiffs and Datum (a company acquired by Symmetricom) in which they assigned to Datum certain intellectual property rights. The complaint has since been amended for the second time and Symmetricom was served with the second amended complaint on or around January 7, 2011. The second amended complaint alleges several causes of action, including claims against Symmetricom for contract rescission, breach of contract, conversion and unjust enrichment, and seeks unspecified monetary damages along with equitable relief. Management believes that this lawsuit has no merit or basis and intends to defend this lawsuit vigorously and as a result, no accrual has been made in relation to this litigation. Management believes the final outcome of this matter will not have a material adverse effect on our financial position and results of operations.

General

Under the indemnification provisions of our standard sales contracts, we agree to defend the customer against third party claims asserting infringement of certain intellectual property rights, which may include patents, copyrights, trademarks or trade secrets, and to pay any judgments entered on such claims against the reseller/customer. The exposure to us under these indemnification provisions is generally limited to the total amount paid by the customer under the agreement. However, certain agreements include indemnification provisions that could potentially expose us to losses in excess of the amount received under the agreement. To date, there have been no claims under such indemnification provisions. We believe the estimated fair value of these indemnification agreements is not material.

We are also a party to certain other claims in the normal course of our operations. While the results of these claims cannot be predicted with any certainty, we believe that the final outcome of these matters will not have a material adverse effect on our consolidated financial position and results of operations.

Note 11. Business Segment Information

Symmetricom has two operating segments: Communications and Government and Enterprise. These two operating segments are also our reporting segments. The Chief Operating Decision Maker (CODM), as defined by authoritative accounting guidance on Segment Reporting, is our President and Chief Executive Officer (CEO). Our CEO allocates resources to and assesses the performance of each operating segment using information about its revenue and operating income (loss) before interest and taxes.

With the exception of intangible assets, we do not identify or allocate assets by operating segment, nor does our CEO evaluate operating segments using discrete asset information. We do not allocate restructuring charges, interest and other income, interest expense, or income taxes to operating segments.

The following describes our two reporting segments:

Communications

Our Communications business supplies timing technologies and services for worldwide communications infrastructure. Products include primary reference sources, synchronization distribution systems and embedded components and software, all of which support the timing and synchronization requirements of telecommunications and cable networks and equipment.

Government and Enterprise

Our Government and Enterprise business provides time technology products for aerospace/defense, Power, IT infrastructure and science and metrology applications. Precision time and frequency systems enable a range of critical operations, including the international time scale, global navigation, the management of power grids, synchronization of complex control systems, and signals intelligence for securing communications in remote and hostile environments.

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Segment revenue, gross profit, and operating income (loss) were as follows during the periods presented:

Three months ended March 31, 2013
	Communications		Government and Enterprise		Corporate			Total
	(In thousands)
Net revenue	$	29,958	$	23,391	$	—		$	53,349
Cost of sales		14,144		14,753		369			29,266
Gross profit		15,814		8,638		(369	)		24,083
Operating expenses		8,916		7,137		7,865			23,918
Operating income (loss)	$	6,898	$	1,501	$	(8,234	)	$	165
Three months ended April 1, 2012
	Communications		Government and Enterprise		Corporate			Total
	(In thousands)
Net revenue	$	32,646	$	27,792	$	—		$	60,438
Cost of sales		16,672		19,041		64			35,777
Gross profit		15,974		8,751		(64	)		24,661
Operating expenses		9,121		6,697		5,568			21,386
Operating income (loss)	$	6,853	$	2,054	$	(5,632	)	$	3,275
Nine Months ended March 31, 2013
	Communications		Government and Enterprise		Corporate			Total
	(In thousands)
Net revenue	$	87,585	$	71,306	$	—		$	158,891
Cost of sales		42,779		46,351		375			89,505
Gross profit		44,806		24,955		(375	)		69,386
Operating expenses		27,705		20,994		23,715			72,414
Operating income (loss)	$	17,101	$	3,961	$	(24,090	)	$	(3,028	)
Nine Months ended April 1, 2012
	Communications		Government and Enterprise		Corporate			Total
	(In thousands)
Net revenue	$	99,523	$	75,587	$	—		$	175,110
Cost of sales		49,807		48,332		1,155			99,294
Gross profit		49,716		27,255		(1,155	)		75,816
Operating expenses		28,369		19,712		16,728			64,809
Operating income (loss)	$	21,347	$	7,543	$	(17,883	)	$	11,007

The information in the Corporate category above represents corporate-related costs that are not allocated to either of our two segments for the purpose of evaluating their performance. The following table outlines our major corporate-related costs:

	Three Months Ended					Nine Months Ended
	March 31, 2013		April 1, 2012			March 31, 2013		April 1, 2012
	(In thousands)					(In thousands)
Selling, general and administrative costs	$	6,912	$	5,643		$	21,571	$	16,604
Restructuring charges		1,322		(11	)		2,519		1,279
Corporate-related total	$	8,234	$	5,632		$	24,090	$	17,883

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Note 12. Business Combination

During the third quarter of fiscal 2012, the Company acquired a product line (existing technology, customer relationships, fixed assets and employees) to enhance the Company’s product offerings in embedded timing and synchronization solutions for residential small cell solutions. This transaction was recorded as an acquisition of a business. The transaction price was approximately $2.4 million, of which $1.4 million was paid in cash and approximately $1.0 million is contingent consideration payable as a royalty upon future sales of such products.

The fair value of the contingent consideration arrangement at the acquisition date was $0.5 million. We estimated the fair value of the contingent consideration using a probability-weighted discounted cash flow model (See Note 2). The purchase price was determined as follows (amounts in thousands):

Initial cash payment	$	1,400
Fair value of contingent consideration		540
Total	$	1,940

This purchase price was allocated to fixed assets and intangible assets based on their estimated fair values as follows (amounts in thousands):

Fixed assets	$	50
Intangible assets		1,890
Total	$	1,940

The estimated fair value of intangible assets acquired under the transaction consists of the following (in thousands):

Existing technology (estimated useful life 4 years)	$	1,612
Customer relationships (estimated useful life 2 years)		278
Total	$	1,890

The fair value of the acquired non-monetary assets, summarized above, were derived from significant unobservable inputs (“Level 3 inputs”) determined by the Company based on market analysis, income analysis (discounted cash flow model), or cost approach. The fair value of fixed assets acquired was determined using market data for similar assets. The fair value of existing technology was determined using a discounted cash flow model from cash flow projections prepared by management, including estimated undiscounted cash flows of approximately $3 million during the five to six year period after the acquisition, and a weighted average cost of capital. The fair value of customer relationships was determined using a cost approach which includes an estimate of time and expenses required to recreate the intangible asset.

During the second quarter of fiscal 2013, the Company acquired a product line (existing technology, inventories, and support from the former owner) to enhance the Company’s product offerings of test and measurement solutions. This transaction has been recorded as an acquisition of a business. The transaction price was approximately $0.5 million payable in cash in periodic installments to the former owner. The purchase price was entirely allocated to existing technology (the acquired intangible asset) which has an estimated useful life of 5 years.

Pro forma results of operations have not been presented because the effect of the business combinations described in this Note was not material to our condensed consolidated results of operations. Revenue and earnings per share for the acquired businesses from the date of acquisition through March 31, 2013, were not material.

Note 13. Subsequent Event

Effective as of April 29, 2013, the Board of Directors of the Company appointed Elizabeth A. Fetter, a member of the Board of Directors of the Company, as the Company’s Chief Executive Officer. Ms. Fetter replaces David G. Côté, who resigned as Chief Executive Officer and as a member of the Board of Directors of the Company effective as of the same date.

Item 2. Management’s Discussion and Analysis of Financial Condition and Results of Operations

The following discussion and analysis of our financial condition and results of operations should be read together with the condensed consolidated financial statements and related notes included elsewhere in this report.

When used in this discussion or elsewhere in this report, the words “expects,” “anticipates,” “estimates,” “believes,” “plans,” “will,” “intend,” “can” and similar expressions are intended to identify forward-looking statements. These statements are subject to risks and uncertainties that could cause actual results to differ materially from those projected.

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These risks and uncertainties include, but are not limited to, risks relating to general economic conditions in the markets we address and the telecommunications market in general, risks related to the development of our new products and services, our reliance on our contract manufacturer, the effects of increasing competition and competitive pricing pressure, uncertainties associated with changing intellectual property laws, developments in and expenses related to litigation, inability to obtain sufficient amounts of key components, the rescheduling or cancellations of key customer orders, the loss of a key customer, the effects of new and emerging technologies, the risk that excess inventory may result in write-offs, price erosion and decreased demand, fluctuations in the rate of exchange of foreign currency, changes in our effective tax rate, market acceptance of our new products and services, technological advancements, undetected errors or defects in our products, the risks associated with our international sales, potential short-term investment losses and other risks due to credit market dislocation, geopolitical risks and risk of terrorist activities, the risks associated with attempting to integrate other companies and businesses we acquire, and the other risks set forth below in Part II, Item 1A, “Risk Factors.”

These forward-looking statements speak only as of the date hereof. We expressly disclaim any obligation or undertaking to release publicly any updates or revisions to any forward-looking statements contained herein to reflect any change in our expectations with regard thereto or any change in events, conditions or circumstances or on which any such statement is based.

All references to “Symmetricom,” “we,” “us,” and “our” mean Symmetricom, Inc. and its subsidiaries, except where it is made clear that the term means only the parent company. Dollar amounts in the tables in this “Management’s Discussion and Analysis of Financial Condition and Results of Operations” are in thousands.

Overview

Symmetricom is a leading source worldwide of highly precise timekeeping technologies, instruments and solutions. We generate, distribute and apply precise time for the communications, aerospace/defense, power, IT infrastructure and metrology industries. Symmetricom’s customers, from communications service providers and network equipment manufacturers to governments and their suppliers worldwide, are able to build more reliable networks and systems by using our advanced timing technologies, atomic clocks, services and solutions. Our products support today’s precise timing standards, including GPS-based timing, IEEE 1588 (PTP), Network Time Protocol (NTP), Synchronous Ethernet, Building Integrated Timing Supply (BITS) and Data Over Cable Service Interface Specifications (DOCSIS(R)) timing.

Effective as of April 29, 2013, the Board of Directors of Symmetricom appointed Elizabeth A. Fetter, a member of Symmetricom’s Board of Directors, as the Chief Executive Officer of Symmetricom. Ms. Fetter replaces David G. Côté, who resigned as Chief Executive Officer and as a member of the Board of Directors of Symmetricom effective as of the same date.

Critical Accounting Estimates

Our condensed consolidated financial statements have been prepared in accordance with accounting principles generally accepted in the United States, which require us to make estimates and judgments that affect the reported amounts of assets, liabilities, revenue and expenses, and related disclosures at the date of our financial statements. On an ongoing basis, management evaluates its estimates and judgments. Management bases its estimates and judgments on historical experience and on various other factors that are believed to be reasonable under the circumstances, the results of which form the basis for making judgments about the carrying values of assets and liabilities that are not readily apparent from other sources. Actual results may differ from these estimates under different assumptions or conditions.

An accounting policy is deemed to be critical if it requires an accounting estimate to be made based on assumptions about matters that are highly uncertain at the time the estimate is made, if different estimates reasonably could have been used, or if changes in the estimate that are reasonably likely to occur could materially impact the financial statements. We believe that there have been no significant changes during the three and nine months ended March 31, 2013 to the items that we disclosed as our critical accounting policies and estimates in Management’s Discussion and Analysis of Financial Condition and Results of Operations in our Annual Report on Form 10-K for the fiscal year ended July 1, 2012.

Known Trends and Uncertainties Impacting Future Results of Operations

Current macro-economic factors are dynamic and uncertain and are likely to remain so for the remainder of fiscal year 2013. If economic conditions remain uncertain or worsen, or if there are further reductions in government and/or defense spending, our customers may delay or reduce capital expenditures. Among other things, these factors could result in reductions in sales of our products and services, longer sales cycles, difficulties in collecting accounts receivable, additional excess and obsolete inventory, gross margin deterioration, slower adoption of new technologies, increased price competition and supplier difficulties.

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Results of Operations

The following table presents selected items in our condensed consolidated statements of operations as a percentage of total net revenue for the three and nine months ended March 31, 2013 and April 1, 2012:

	Three Months Ended						Nine Months Ended
	March 31, 2013			April 1, 2012			March 31, 2013			April 1, 2012
Net revenue
Communications		56.2	%		54.0	%		55.1	%		56.8	%
Government and Enterprise		43.8	%		46.0	%		44.9	%		43.2	%
Total net revenue		100.0	%		100.0	%		100.0	%		100.0	%
Cost of products and services		53.7	%		59.0	%		55.6	%		55.8	%
Acquisition-related costs		0.4	%		0.1	%		0.5	%		0.3	%
Restructuring charges		0.7	%		0.1	%		0.2	%		0.7	%
Gross profit		45.1	%		40.8	%		43.7	%		43.3	%
Operating expenses:
Research and development		15.5	%		11.8	%		15.4	%		11.7	%
Selling, general and administrative		27.4	%		23.6	%		28.7	%		25.1	%
Amortization of intangible assets		0.2	%		0.1	%		0.2	%		0.1	%
Restructuring charges		1.8	%		(0.1	)%		1.4	%		0.1	%
Operating income (loss)		0.3	%		5.4	%		(1.9	)%		6.3	%
Interest income, net of amortization (accretion) of premium (discount) on investment		0.2	%		0.4	%		0.2	%		(0.0	)%
Income (loss) before taxes		0.5	%		5.8	%		(1.8	)%		6.3	%
Income tax provision (benefit)		(1.0	)%		2.1	%		(1.0	)%		2.1	%
Net income (loss)		1.5	%		3.6	%		(0.7	)%		4.2	%

Net Revenue

	Three Months Ended						Change			% Change			Nine Months Ended						$ Change			% Change
	March 31, 2013			April 1, 2012									March 31, 2013			April 1, 2012
Net Revenue:
Communications	$	29,958		$	32,646		$	(2,688	)		(8.2	)%	$	87,585		$	99,523		$	(11,938	)		(12.0	)%
Government and Enterprise		23,391			27,792			(4,401	)		(15.8	)		71,306			75,587			(4,281	)		(5.7	)
Total Net Revenue	$	53,349		$	60,438		$	(7,089	)		(11.7	)%	$	158,891		$	175,110		$	(16,219	)		(9.3	)%
Percentage of Revenue		100.0	%		100.0	%								100	%		100	%

Third Quarter of Fiscal 2013: Net revenue consists of sales of products, software licenses, and services. In the third quarter of fiscal 2013, net revenue decreased $7.1 million, or 11.7%, compared to the corresponding quarter of fiscal 2012. The decrease of $2.7 million, or 8.2%, in Communications revenue was due to lower sales of Traditional Synchronization equipment for wireline and cable network infrastructure. The decrease of $4.4 million, or 15.8%, in Government and Enterprise segment revenue was due to lower U.S. government spending partially offset by higher Quantum™ Chip Scale Atomic Clock (CSAC) revenue.

First Nine Months of Fiscal 2013: In the first nine months of fiscal 2013, net revenue decreased $16.2 million, or 9.3%, compared to the corresponding period of fiscal 2012. Communications revenue decreased $11.9 million, or 12.0%, compared to the same period for the prior year, due to lower sales of Traditional Synchronization equipment for wireline and cable network infrastructure, partially offset by higher Embedded Systems revenue. Government and Enterprise segment revenue decreased $4.3 million, or 5.7%, compared to the corresponding period of fiscal 2012 due to lower U.S. government spending partially offset by higher CSAC revenue.

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Gross Profit:

	Three Months Ended						Change			% Change			Nine Months Ended						$ Change			% Change
	March 31, 2013			April 1, 2012									March 31, 2013			April 1, 2012
Gross Profit:
Communications	$	15,814		$	15,974		$	(160	)		(1.0	)%	$	44,806		$	49,716		$	(4,910	)		(9.9	)%
Government and Enterprise		8,638			8,751			(113	)		(1.3	)		24,955			27,255			(2,300	)		(8.4	)
Corporate related		(369	)		(64	)		(305	)		476.6			(375	)		(1,155	)		780			(67.5	)
Total Gross Profit	$	24,083		$	24,661		$	(578	)		(2.3	)%	$	69,386		$	75,816		$	(6,430	)		(8.5	)%
Percentage of Revenue		45.1	%		40.8	%								43.7	%		43.3	%

Third Quarter of Fiscal 2013: Gross profit as a percentage of revenue in the third quarter of fiscal 2013 increased to 45.1%, compared to 40.8% in the corresponding quarter of fiscal 2012, due to lower manufacturing costs.

In the third quarter of fiscal 2013, gross profit as a percentage of revenue for our Communications segment increased to 52.8%, compared to 48.9% in the same period of the prior year, due to lower manufacturing costs. Gross profit as a percentage of revenue for our Government and Enterprise segment increased to 36.9% in the third quarter of fiscal 2013, compared to 31.5% in the third quarter of fiscal 2012, due to lower manufacturing costs. Corporate related charges increased by $0.3 million, or 476.6%, in the third quarter of fiscal 2013 due to higher restructuring charges.

First Nine Months of Fiscal 2013: Gross profit as a percentage of revenue in the first nine months of fiscal 2013 increased to 43.7% compared to 43.3% in the corresponding period of fiscal 2012 due to lower manufacturing costs and a decline in corporate related charges.

In the first nine months of fiscal 2013, gross profit as a percentage of revenue for our Communications segment increased to 51.2%, compared to 50.0% in the corresponding period of fiscal 2012, due to lower manufacturing costs. Gross profit as a percentage of revenue for our Government and Enterprise segment decreased to 35.0% in the first nine months of fiscal 2013, compared to 36.1% in the corresponding period of fiscal 2012, due to an unfavorable product mix, partially offset by lower manufacturing costs. Corporate related charges decreased $0.8 million due to lower restructuring charges in the first nine months of fiscal 2013.

Operating Expenses:

Research and Development Expense:

	Three Months Ended						Change		% Change			Nine Months Ended						$ Change		% Change
	March 31, 2013			April 1, 2012								March 31, 2013			April 1, 2012
Research and development expense	$	8,291		$	7,129		$	1,162		16.3	%	$	24,409		$	20,575		$	3,834		18.6	%
Percentage of Revenue		15.5	%		11.8	%							15.4	%		11.7	%

Third Quarter of Fiscal 2013: Research and development expense consists primarily of salaries and benefits, prototype expenses and fees paid to outside consultants. These expenses increased in the third quarter of fiscal 2013 due to higher outside consulting fees and prototype expenses for product development. We expect that research and development expenses in the fourth quarter of fiscal 2013 will be similar to the third quarter of fiscal 2013.

First Nine Months of Fiscal 2013: Research and development expenses in the first nine months of fiscal 2013 were higher than the same period of fiscal 2012 due to higher outside consulting fee and prototype expenses for product development.

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Selling, General and Administrative:

	Three Months Ended						Change		% Change			Nine Months Ended						$ Change		% Change
	March 31, 2013			April 1, 2012								March 31, 2013			April 1, 2012
Selling, general and administrative	$	14,593		$	14,281		$	312		2.2	%	$	45,598		$	43,955		$	1,643		3.7	%
Percentage of Revenue		27.4	%		23.6	%							28.7	%		25.1	%

Third Quarter of Fiscal 2013: Selling, general and administrative expenses consist primarily of salaries, benefits, sales commissions and travel-related expenses for our sales and services, marketing, and general and administrative departments. Selling, general, and administrative expenses in the third quarter of fiscal 2013 were comparable to the same quarter of fiscal 2012. We expect that selling, general and administrative expenses in the fourth quarter of fiscal 2013 will be consistent with the third quarter of fiscal 2013.

First Nine Months of Fiscal 2013: Selling, general and administrative expenses were higher in the first nine months of fiscal 2013 than the same period for fiscal 2012 due to an increase in the allowance for doubtful accounts, deferred compensation plan charges, and consulting fees, partially offset by lower sales commissions and incentive compensation.

Amortization of intangible assets:

	Three Months Ended						Change		% Change			Nine Months Ended						$ Change		% Change
	March 31, 2013			April 1, 2012								March 31, 2013			April 1, 2012
Amortization of intangible assets	$	87		$	52		$	35		67.3	%	$	259		$	156		$	103		66.0	%
Percentage of Revenue		0.2	%		0.1	%							0.2	%		0.1	%

Amortization of intangibles increased in the third quarter and first nine months of fiscal 2013 compared to the corresponding period of fiscal 2012 due to higher amortization of intangible assets arising from the assets acquired after the third quarter of fiscal 2012, partially offset by certain assets being fully amortized before or during the first nine months of fiscal 2013.

Restructuring charges:

	Three Months Ended						Change		% Change			Nine Months Ended						$ Change		% Change
	March 31, 2013			April 1, 2012								March 31, 2013			April 1, 2012
Restructuring charges	$	947		$	(76	)	$	1,023		(1,346	)%	$	2,148		$	123		$	2,025		1,646.3	%
Percentage of Revenue		1.8	%		(0.1	)%							1.4	%		0.1	%

Restructuring charges in the third quarter and first nine months of fiscal 2013 consisted of severance, consulting, and outside service charges related to our reduction in work force and facilities, and also due to the closing of our research and development operations in China.

Interest income, net of amortization (accretion) of premium (discount) on investments:

	Three Months Ended						Change			% Change			Nine Months Ended						$ Change		% Change
	March 31, 2013			April 1, 2012									March 31, 2013			April 1, 2012
Interest income, net of amortization (accretion) of premium (discount) on investments	$	98		$	225		$	(127	)		(56.4	)%	$	240		$	(5	)	$	245		(4,900.0	)%
Percentage of Revenue		0.2	%		0.4	%								0.2	%		(0.0	)%

Interest income, net of amortization (accretion) of premium (discount) on investments decreased $0.1 million in the third quarter of fiscal 2013 compared to the same period of prior year due to lower yields in the third quarter of fiscal 2013.

Interest income, net of amortization (accretion) of premium (discount) on investments increased $0.2 million in the first nine months of fiscal 2013 compared to the same period of fiscal 2012 due to lower amortization of premium on investments in the first nine months of fiscal 2013.

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Income tax provision (benefit):

	Three Months Ended						Change			% Change			Nine Months Ended						$ Change			% Change
	March 31, 2013			April 1, 2012									March 31, 2013			April 1, 2012
Income tax provision (benefit)	$	(556	)	$	1,296		$	(1,852	)		(142.9	)%	$	(1,629	)	$	3,604		$	(5,233	)		(145.2	)%
Percentage of Revenue		(1.0	)%		2.1	%								(1.0	)%		2.1	%

Third Quarter of Fiscal 2013: We recorded an income tax benefit of $0.6 million in the third quarter of fiscal 2013, compared to a provision of $1.3 million in the corresponding quarter of fiscal 2012. Our effective tax rate in the third quarter of fiscal 2013 was -211%, compared to an effective tax rate of 37.0% in the corresponding period of fiscal 2012. We recorded a tax benefit for the third quarter of fiscal 2013 primarily due to the retroactive extension of the Federal research tax credit in the third quarter of fiscal 2013.

On January 2, 2013, the President signed into law The American Taxpayer Relief Act of 2012. Under prior law, a taxpayer was entitled to a research tax credit for qualifying amounts paid or incurred on or before December 31, 2011. The 2012 Taxpayer Relief Act extends the research credit for two years to Dec. 31, 2013. The extension of the research credit is retroactive and includes amounts paid or incurred after Dec. 31, 2011. As a result of the retroactive extension, we recognized a benefit of approximately $0.5 million for qualifying amounts incurred in Fiscal 2012, and an estimated benefit of approximately $0.7 million for fiscal 2013.

First Nine Months of Fiscal 2013: The income tax benefit was $1.6 million in the first nine months of fiscal 2013, compared to an income tax provision of $3.6 million in the corresponding period of fiscal 2012. Our effective tax rate in the first nine months of fiscal 2013 was 58.4%, compared to an effective tax rate of 32.8% in the corresponding period of fiscal 2012. The effective tax rate for the first nine months of fiscal 2013 is higher than the statutory rate due to the retroactive extension of the research tax credit in the third quarter of fiscal 2013. The effective tax rate for the first nine months of fiscal 2012 benefited from the utilization of a capital loss and from the reversal of a reserve on an uncertain tax position due to expiration of the statute of limitation.

Key Operating Metrics

A key operating metric for measuring our performance is sales backlog. A comparison of this metric at the end of the third quarter of fiscal 2013 with the end of fiscal 2012 is below:

Sales Backlog:

Our backlog consists of firm orders that have yet to be shipped to the customer, or may not be shippable to a customer until a future period. Most orders included in backlog can be rescheduled or cancelled by customers without significant penalty. Historically, a substantial portion of net revenue in any fiscal period has been derived from orders received during that fiscal period.

Our backlog totaled $42.8 million as of March 31, 2013, compared to $45.4 million as of July 1, 2012. Our backlog, which is shippable within the next six months totaled $33.2 million as of March 31, 2013, compared to $34.9 million as of July 1, 2012.

Liquidity and Capital Resources

Balance Sheet and Cash Flows

The following table summarizes our cash, cash equivalents and short-term investments:

	March 31, 2013		July 1, 2012		Change
Cash and cash equivalents	$	22,371	$	27,659	$	(5,288	)
Short-term investments		47,351		39,280		8,071
Total	$	69,722	$	66,939	$	2,783

As of March 31, 2013, our principal sources of liquidity consisted of cash, cash equivalents, and short-term investments of $69.7 million and accounts receivable of $38.9 million.

As of March 31, 2013, working capital was $138.7 million compared to $140.0 million as of July 1, 2012. Cash, cash equivalents and short-term investments as of March 31, 2013 increased to $69.7 million from $66.9 million as of July 1, 2012.

Our days sales outstanding in accounts receivable was 66 days as of March 31, 2013, compared to 67 days as of July 1, 2012.

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Our principal uses of cash historically have consisted of the purchase of inventories, payroll, and other operating expenses related to the manufacturing of products, development of new products, and purchase of property and equipment.

Cash flows from operating activities

Net cash provided by operating activities in the first nine months of fiscal 2013 was $11.5 million. Net cash provided by operating activities consisted of non-cash charges of $11.3 million and net changes in assets and liabilities of $1.3 million, partially offset by a net loss of $1.2 million. The non-cash charges consisted of $4.9 million in depreciation and amortization, $5.3 million in stock-based compensation, $2.1 million in provision for excess and obsolete inventory, allowance for doubtful accounts of $0.6 million and $0.4 million of loss on disposal of fixed assets, partially offset by a $1.9 million use of deferred income taxes. Net changes in assets and liabilities consisted primarily of a $6.5 million decrease in accounts receivable, a $0.6 million increase in accounts payable, and a decrease in prepaids and other assets of $0.8 million, partially offset by an increase in inventories of $1.7 million, a decrease in accrued compensation of $2.7 million and a decrease in other accrued liabilities of $2.2 million.

Cash flows from investing activities

Net cash used in investing activities was $13.9 million in the first nine months of fiscal 2013, which included the purchase of $33.3 million of short-term investments and $4.4 million of property, plant and equipment, partially offset by the sale/maturities of short-term investments of $24.5 million.

Cash flows from financing activities

Net cash used for financing activities was $2.9 million in the first nine months of fiscal 2013, which represented the repurchase of $5.6 million of common stock, partially offset by 2.7 million of cash generated from the issuance of common stock under our ESPP and stock option program.

Contingencies

See Item 1 of Part I, Financial Statements—Note 10—Litigation and Contingencies.

Recently Issued Accounting Pronouncements

See Item 1 of Part I, Financial Statements—Note 1—Basis of Presentation and Recently Issued Accounting Pronouncements.

Item 3. Quantitative and Qualitative Disclosures About Market Risk

For quantitative and qualitative disclosures about market risk affecting Symmetricom, see “Quantitative and Qualitative Disclosures About Market Risk” in Item 7A of Part II of our Annual Report on Form 10-K for the fiscal year ended July 1, 2012. Our exposure to market risk has not changed materially since July 1, 2012.

Item 4. Controls and Procedures

Evaluation of Disclosure Controls and Procedures

Our disclosure controls and procedures are designed to ensure that information required to be disclosed in the reports that we file or submit under the Securities Exchange Act of 1934, as amended, is (i) recorded, processed, summarized and reported, within the time periods specified in the SEC’s rules and forms, and (ii) accumulated and communicated to our management, including our Chief Executive Officer and Chief Financial Officer, as appropriate to allow timely decisions regarding required disclosure. Based on this evaluation, our Chief Executive Officer and Chief Financial Officer have concluded that our disclosure controls and procedures were effective as of the end of the fiscal quarter covered by this report.

Changes in Internal Control Over Financial Reporting

There were no changes in our internal control over financial reporting that occurred during the quarter ended March 31, 2013 that have materially affected, or are reasonably likely to materially affect, our internal control over financial reporting.

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PART II. OTHER INFORMATION

Item 1. Legal Proceedings

See Item 1 of Part I, Financial Statements—Note 10—Litigation and Contingencies.

Item 1A. Risk Factors

In addition to the other information set forth in this report and the new risk factors set forth below, you should carefully consider the risk factors discussed in Part I, Item 1A “Risk Factors” in our Annual Report on Form 10-K for our fiscal year ended July 1, 2012. The risks discussed in our Annual Report on Form 10-K and the new risk factors set forth below could materially affect our business, financial condition and results of operations. The risks described in our Annual Report on Form 10-K and the new risk factors set forth below are not the only risks facing us. Other risks and uncertainties not currently known to us or that we currently deem to be immaterial also may materially and adversely affect our business, financial condition or operating results. Two new risk factors are set forth below:

Reductions in defense spending could adversely affect our business

In August 2011, Congress enacted the Budget Control Act of 2011 (the “BCA”), which requires spending caps and certain reductions in security spending over a ten-year period through 2021. Budget cuts (or sequestration) began to be implemented on March 1, 2013, and without additional congressional action, further sequestration as set forth in the BCA may be implemented. The impact of sequestration is yet to be fully determined. Sequestration could have a material adverse effect on our business and results of operations. Significant additional reductions to defense spending could occur over the next decade, which could have a significant adverse impact on us.

A decline in demand for Symmetricom’s mature products and technologies has adversely affected, and may continue to adversely affect, our business

A material amount of Symmetricom’s revenue is derived from products and technologies that are sold in relatively mature markets, such as the wireline and cable markets within our Communications business. We have experienced declining market demand for these products as our customers shift spending to newer technologies such as wireless infrastructure. We do not currently expect market demand for these and other mature products and technologies to increase. Accordingly, we expect our revenue from these products and technologies to be stagnant or to decline over time. However, the extent to which market demand for these mature products and technologies will affect our business cannot be predicted with certainty. Continuing decreases in market demand for these products and technologies, particularly if we are unable to offset these decreases with other sources of revenue, could materially adversely affect our revenue and profitability.

Item 2. Unregistered Sales of Equity Securities and Use of Proceeds

a) Not applicable.

b) Not applicable.

c) None

We repurchased 33,000 shares in the third quarter of fiscal 2013 for an aggregate price of approximately $0.2 million to cover the cost of employee income taxes on option exercises.

As of March 31, 2013, the total number of shares available for repurchase under the repurchase program authorized by the Board of Directors was approximately 1.9 million.

Item 3. Defaults Upon Senior Securities

Not applicable.

Item 4. Mine Safety Disclosures

Not applicable.

Item 5. Other Information

Not applicable.

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Item 6. Exhibits

Exhibit Number	Description of Exhibits
10.1	Amendment 3 to Manufacturing Service Agreement , dated as of March 1, 2013, by and between Symmetricom, Inc. and SANMINA Corporation.
31	Certification of Chief Executive Officer and Chief Financial Officer Pursuant to Section 302 of the Sarbanes-Oxley Act of 2002.
32	Certification Pursuant to Section 906 of the Sarbanes-Oxley Act of 2002.
101	Interactive Data File.

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SIGNATURES

Pursuant to the requirements of the Securities Exchange Act of 1934, the Registrant has duly caused this report to be signed on our behalf by the undersigned thereunto duly authorized.

	SYMMETRICOM, INC.
	(Registrant)
Date: May 8, 2013	By:	/S/    ELIZABETH A. FETTER
		Elizabeth A. Fetter
		Chief Executive Officer (Principal Executive Officer) and Director
Date: May 8, 2013	By:	/S/    JUSTIN R. SPENCER
		Justin R. Spencer
		Executive Vice President, Chief Financial Officer and Secretary (Principal Financial and Accounting Officer)

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